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Conserved domains on  [gi|818754564|gb|KKT96626|]
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MAG: hypothetical protein UW97_C0007G0019 [Parcubacteria group bacterium GW2011_GWA2_45_15]

Protein Classification

Tfp pilus assembly protein FimT/FimU( domain architecture ID 11471961)

Tfp pilus assembly protein FimT/FimU

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FimT COG4970
Type IV pilus assembly protein FimT [Cell motility, Extracellular structures];
4-54 4.57e-07

Type IV pilus assembly protein FimT [Cell motility, Extracellular structures];


:

Pssm-ID: 443996 [Multi-domain]  Cd Length: 73  Bit Score: 44.84  E-value: 4.57e-07
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 818754564   4 KGFTVLEILVAISIITLVVTIITISFSKLNSAQALDKSATLVTSVLDEARS 54
Cdd:COG4970    9 RGFTLIELLVVLAILAILAAIAVPSFSSLIARQRLRAAANELAAALRLARS 59
 
Name Accession Description Interval E-value
FimT COG4970
Type IV pilus assembly protein FimT [Cell motility, Extracellular structures];
4-54 4.57e-07

Type IV pilus assembly protein FimT [Cell motility, Extracellular structures];


Pssm-ID: 443996 [Multi-domain]  Cd Length: 73  Bit Score: 44.84  E-value: 4.57e-07
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 818754564   4 KGFTVLEILVAISIITLVVTIITISFSKLNSAQALDKSATLVTSVLDEARS 54
Cdd:COG4970    9 RGFTLIELLVVLAILAILAAIAVPSFSSLIARQRLRAAANELAAALRLARS 59
T4P_ComGE NF041013
competence type IV pilus minor pilin ComGE;
2-52 2.26e-04

competence type IV pilus minor pilin ComGE;


Pssm-ID: 468942 [Multi-domain]  Cd Length: 83  Bit Score: 37.95  E-value: 2.26e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 818754564   2 KYKGFTVLEILVAISIITLVVTII--TISFSKLNSAQALDKSATLvtSVLDEA 52
Cdd:NF041013   2 KNKGFILLESLVALALLALIVSLLlpSLTQIQKEREEIKQKEEAL--QVLYEA 52
typeII_sec_gspH TIGR01708
type II secretion system protein H; This model represents GspH, protein H of the main terminal ...
 5-55 3.97e-03

type II secretion system protein H; This model represents GspH, protein H of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 130769 [Multi-domain]  Cd Length: 143  Bit Score: 35.62  E-value: 3.97e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 818754564    5 GFTVLEILVAISIITLVVTIITISFSKLNSAQALDKSATLVTSVLDEARSL 55
Cdd:TIGR01708   5 GFTLIELLVVLAIMGLVAAAAALSLVSHYGTKSLDQVAGRLAARLRLAQTS 55
 
Name Accession Description Interval E-value
FimT COG4970
Type IV pilus assembly protein FimT [Cell motility, Extracellular structures];
4-54 4.57e-07

Type IV pilus assembly protein FimT [Cell motility, Extracellular structures];


Pssm-ID: 443996 [Multi-domain]  Cd Length: 73  Bit Score: 44.84  E-value: 4.57e-07
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 818754564   4 KGFTVLEILVAISIITLVVTIITISFSKLNSAQALDKSATLVTSVLDEARS 54
Cdd:COG4970    9 RGFTLIELLVVLAILAILAAIAVPSFSSLIARQRLRAAANELAAALRLARS 59
T4P_ComGE NF041013
competence type IV pilus minor pilin ComGE;
2-52 2.26e-04

competence type IV pilus minor pilin ComGE;


Pssm-ID: 468942 [Multi-domain]  Cd Length: 83  Bit Score: 37.95  E-value: 2.26e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 818754564   2 KYKGFTVLEILVAISIITLVVTII--TISFSKLNSAQALDKSATLvtSVLDEA 52
Cdd:NF041013   2 KNKGFILLESLVALALLALIVSLLlpSLTQIQKEREEIKQKEEAL--QVLYEA 52
PulG COG2165
Type II secretory pathway, pseudopilin PulG [Cell motility, Intracellular trafficking, ...
 1-37 5.18e-04

Type II secretory pathway, pseudopilin PulG [Cell motility, Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 441768 [Multi-domain]  Cd Length: 99  Bit Score: 37.20  E-value: 5.18e-04
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 818754564   1 MKYKGFTVLEILVAISIITLVVTIITISFSKLNSAQA 37
Cdd:COG2165    8 RRQRGFTLIELLVVIAIIGILAALALPALQGARERAR 44
ComGC COG4537
Competence protein ComGC [Mobilome: prophages, transposons];
1-34 2.65e-03

Competence protein ComGC [Mobilome: prophages, transposons];


Pssm-ID: 443603 [Multi-domain]  Cd Length: 108  Bit Score: 35.29  E-value: 2.65e-03
                         10        20        30
                 ....*....|....*....|....*....|....
gi 818754564   1 MKYKGFTVLEILVAISIITLVVTIITISFSKLNS 34
Cdd:COG4537    9 KKEKGFTLIEMLIVLLIISILLLIAVPNLTKQRE 42
typeII_sec_gspH TIGR01708
type II secretion system protein H; This model represents GspH, protein H of the main terminal ...
 5-55 3.97e-03

type II secretion system protein H; This model represents GspH, protein H of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 130769 [Multi-domain]  Cd Length: 143  Bit Score: 35.62  E-value: 3.97e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 818754564    5 GFTVLEILVAISIITLVVTIITISFSKLNSAQALDKSATLVTSVLDEARSL 55
Cdd:TIGR01708   5 GFTLIELLVVLAIMGLVAAAAALSLVSHYGTKSLDQVAGRLAARLRLAQTS 55
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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