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Conserved domains on  [gi|818807188|gb|KKU46684|]
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MAG: hypothetical protein UX65_C0001G0078 [Parcubacteria group bacterium GW2011_GWB1_46_8]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF5652 super family cl40901
Family of unknown function (DUF5652); This entry represents a protein containing two ...
 14-69 1.27e-20

Family of unknown function (DUF5652); This entry represents a protein containing two transmembrane helices. Many of these proteins are found in organizms in the Candidate Phyla Radiation.


The actual alignment was detected with superfamily member pfam18893:

Pssm-ID: 436812  Cd Length: 71  Bit Score: 77.31  E-value: 1.27e-20
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 818807188  14 NQAAFIALSIWSLIWKGFALWRASRNNQRNWFIALLVLNTMGILEMVYLFWISKKT 69
Cdd:pfam18893 12 LRPLLLALVVWSLAWKGIALWRAARNKQLPWFITLLLVNTVGILEIIYLLFFRKKR 67
 
Name Accession Description Interval E-value
DUF5652 pfam18893
Family of unknown function (DUF5652); This entry represents a protein containing two ...
 14-69 1.27e-20

Family of unknown function (DUF5652); This entry represents a protein containing two transmembrane helices. Many of these proteins are found in organizms in the Candidate Phyla Radiation.


Pssm-ID: 436812  Cd Length: 71  Bit Score: 77.31  E-value: 1.27e-20
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 818807188  14 NQAAFIALSIWSLIWKGFALWRASRNNQRNWFIALLVLNTMGILEMVYLFWISKKT 69
Cdd:pfam18893 12 LRPLLLALVVWSLAWKGIALWRAARNKQLPWFITLLLVNTVGILEIIYLLFFRKKR 67
 
Name Accession Description Interval E-value
DUF5652 pfam18893
Family of unknown function (DUF5652); This entry represents a protein containing two ...
 14-69 1.27e-20

Family of unknown function (DUF5652); This entry represents a protein containing two transmembrane helices. Many of these proteins are found in organizms in the Candidate Phyla Radiation.


Pssm-ID: 436812  Cd Length: 71  Bit Score: 77.31  E-value: 1.27e-20
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 818807188  14 NQAAFIALSIWSLIWKGFALWRASRNNQRNWFIALLVLNTMGILEMVYLFWISKKT 69
Cdd:pfam18893 12 LRPLLLALVVWSLAWKGIALWRAARNKQLPWFITLLLVNTVGILEIIYLLFFRKKR 67
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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