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Conserved domains on  [gi|891196638|gb|KMW27560|]
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hypothetical protein HMPREF9471_01106 [[Clostridium] clostridioforme WAL-7855]

Protein Classification

DUF1622 domain-containing protein( domain architecture ID 10008860)

DUF1622 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG4828 COG4828
Uncharacterized membrane protein [Function unknown];
7-105 7.08e-24

Uncharacterized membrane protein [Function unknown];


:

Pssm-ID: 443856  Cd Length: 114  Bit Score: 87.57  E-value: 7.08e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 891196638   7 LLSLSANTAIIIFEFIGVGIIIYSGLTSFLKFLRRS---------PDTKIYLAKGLAMGLEFKMGSEILRTVVVREWKEI 77
Cdd:COG4828    2 LLEEIVEIIALILEAIGVLVIVIGALVALIRFLRRElrrrkadayRRIRLTLGRSLLLGLEFLLAADILRTVVAPTLEEL 81

                         90       100
                 ....*....|....*....|....*...
gi 891196638  78 GIVAGIIVLRAALTFLIHWEIKEEERTE 105
Cdd:COG4828   82 GVLGAIVLIRTFLSYFLEKEIEGRWPWQ 109
 
Name Accession Description Interval E-value
COG4828 COG4828
Uncharacterized membrane protein [Function unknown];
7-105 7.08e-24

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 443856  Cd Length: 114  Bit Score: 87.57  E-value: 7.08e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 891196638   7 LLSLSANTAIIIFEFIGVGIIIYSGLTSFLKFLRRS---------PDTKIYLAKGLAMGLEFKMGSEILRTVVVREWKEI 77
Cdd:COG4828    2 LLEEIVEIIALILEAIGVLVIVIGALVALIRFLRRElrrrkadayRRIRLTLGRSLLLGLEFLLAADILRTVVAPTLEEL 81

                         90       100
                 ....*....|....*....|....*...
gi 891196638  78 GIVAGIIVLRAALTFLIHWEIKEEERTE 105
Cdd:COG4828   82 GVLGAIVLIRTFLSYFLEKEIEGRWPWQ 109
DUF1622 pfam07784
Protein of unknown function (DUF1622); This is a family of 14 highly conserved sequences, from ...
 46-98 1.32e-14

Protein of unknown function (DUF1622); This is a family of 14 highly conserved sequences, from hypothetical proteins expressed by both bacterial and archaeal species.


Pssm-ID: 462266  Cd Length: 77  Bit Score: 62.85  E-value: 1.32e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 891196638   46 KIYLAKGLAMGLEFKMGSEILRTVVVREWKEIGIVAGIIVLRAALTFLIHWEI 98
Cdd:pfam07784  25 RLELGRYILLGLEFLLAADILRTVVAPTLEDLGILAAIVLIRTFLSYFLQKEI 77
 
Name Accession Description Interval E-value
COG4828 COG4828
Uncharacterized membrane protein [Function unknown];
7-105 7.08e-24

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 443856  Cd Length: 114  Bit Score: 87.57  E-value: 7.08e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 891196638   7 LLSLSANTAIIIFEFIGVGIIIYSGLTSFLKFLRRS---------PDTKIYLAKGLAMGLEFKMGSEILRTVVVREWKEI 77
Cdd:COG4828    2 LLEEIVEIIALILEAIGVLVIVIGALVALIRFLRRElrrrkadayRRIRLTLGRSLLLGLEFLLAADILRTVVAPTLEEL 81

                         90       100
                 ....*....|....*....|....*...
gi 891196638  78 GIVAGIIVLRAALTFLIHWEIKEEERTE 105
Cdd:COG4828   82 GVLGAIVLIRTFLSYFLEKEIEGRWPWQ 109
DUF1622 pfam07784
Protein of unknown function (DUF1622); This is a family of 14 highly conserved sequences, from ...
 46-98 1.32e-14

Protein of unknown function (DUF1622); This is a family of 14 highly conserved sequences, from hypothetical proteins expressed by both bacterial and archaeal species.


Pssm-ID: 462266  Cd Length: 77  Bit Score: 62.85  E-value: 1.32e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 891196638   46 KIYLAKGLAMGLEFKMGSEILRTVVVREWKEIGIVAGIIVLRAALTFLIHWEI 98
Cdd:pfam07784  25 RLELGRYILLGLEFLLAADILRTVVAPTLEDLGILAAIVLIRTFLSYFLQKEI 77
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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