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Conserved domains on  [gi|899702686|gb|KMY40206|]
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hypothetical protein ACH48_00470 [Aeromonas caviae]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
BcsR_only NF040717
cellulose biosynthesis protein BcsR; BcsR (bacterial cellulose synthesis R, previously YhjR in ...
 23-61 1.49e-15

cellulose biosynthesis protein BcsR; BcsR (bacterial cellulose synthesis R, previously YhjR in Escherichia coli) is a small cytosolic protein essential for cellulose. It appears to form part of the Bcs macrocomplex that also includes membrane, periplasmic, and outer membrane components. BcsR shares homology with the N-terminal domain of BcsP, a longer protein with variable and repetitive C-terminal regions, found in beta-proteobacteria. See PF10945 for an HMM that describes the shared region.


:

Pssm-ID: 468681  Cd Length: 42  Bit Score: 63.34  E-value: 1.49e-15
                        10        20        30        40
                ....*....|....*....|....*....|....*....|
gi 899702686 23 NDVAMVQQAFGVS-LSYQDIAARERLAALCARFPLLAEVA 61
Cdd:NF040717  1 DDIAALSQAFSLPeLRYVDISRQERLAAALARWPLLAELA 40
 
Name Accession Description Interval E-value
BcsR_only NF040717
cellulose biosynthesis protein BcsR; BcsR (bacterial cellulose synthesis R, previously YhjR in ...
 23-61 1.49e-15

cellulose biosynthesis protein BcsR; BcsR (bacterial cellulose synthesis R, previously YhjR in Escherichia coli) is a small cytosolic protein essential for cellulose. It appears to form part of the Bcs macrocomplex that also includes membrane, periplasmic, and outer membrane components. BcsR shares homology with the N-terminal domain of BcsP, a longer protein with variable and repetitive C-terminal regions, found in beta-proteobacteria. See PF10945 for an HMM that describes the shared region.


Pssm-ID: 468681  Cd Length: 42  Bit Score: 63.34  E-value: 1.49e-15
                        10        20        30        40
                ....*....|....*....|....*....|....*....|
gi 899702686 23 NDVAMVQQAFGVS-LSYQDIAARERLAALCARFPLLAEVA 61
Cdd:NF040717  1 DDIAALSQAFSLPeLRYVDISRQERLAAALARWPLLAELA 40
CBP_BcsR pfam10945
Cellulose biosynthesis protein BcsR; CBP_BcsR is a family of bacterial cellulose biosynthesis ...
 23-61 1.29e-08

Cellulose biosynthesis protein BcsR; CBP_BcsR is a family of bacterial cellulose biosynthesis proteins. Cellulose is necessary for biofilm formation in bacteria. Roemling U. and Galperin M.Y. "Bacterial cellulose biosynthesis. Diversity of operons and subunits" (manuscript in preparation).


Pssm-ID: 431551  Cd Length: 42  Bit Score: 45.88  E-value: 1.29e-08
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 899702686  23 NDVAMVQQAFGVS-LSYQDIAARERLAALCARFPLLAEVA 61
Cdd:pfam10945  3 DDIAALSQAFSLPeINYIDISREERLQQALQRWPLLGEFA 42
 
Name Accession Description Interval E-value
BcsR_only NF040717
cellulose biosynthesis protein BcsR; BcsR (bacterial cellulose synthesis R, previously YhjR in ...
 23-61 1.49e-15

cellulose biosynthesis protein BcsR; BcsR (bacterial cellulose synthesis R, previously YhjR in Escherichia coli) is a small cytosolic protein essential for cellulose. It appears to form part of the Bcs macrocomplex that also includes membrane, periplasmic, and outer membrane components. BcsR shares homology with the N-terminal domain of BcsP, a longer protein with variable and repetitive C-terminal regions, found in beta-proteobacteria. See PF10945 for an HMM that describes the shared region.


Pssm-ID: 468681  Cd Length: 42  Bit Score: 63.34  E-value: 1.49e-15
                        10        20        30        40
                ....*....|....*....|....*....|....*....|
gi 899702686 23 NDVAMVQQAFGVS-LSYQDIAARERLAALCARFPLLAEVA 61
Cdd:NF040717  1 DDIAALSQAFSLPeLRYVDISRQERLAAALARWPLLAELA 40
CBP_BcsR pfam10945
Cellulose biosynthesis protein BcsR; CBP_BcsR is a family of bacterial cellulose biosynthesis ...
 23-61 1.29e-08

Cellulose biosynthesis protein BcsR; CBP_BcsR is a family of bacterial cellulose biosynthesis proteins. Cellulose is necessary for biofilm formation in bacteria. Roemling U. and Galperin M.Y. "Bacterial cellulose biosynthesis. Diversity of operons and subunits" (manuscript in preparation).


Pssm-ID: 431551  Cd Length: 42  Bit Score: 45.88  E-value: 1.29e-08
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 899702686  23 NDVAMVQQAFGVS-LSYQDIAARERLAALCARFPLLAEVA 61
Cdd:pfam10945  3 DDIAALSQAFSLPeINYIDISREERLQQALQRWPLLGEFA 42
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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