|
Name |
Accession |
Description |
Interval |
E-value |
| FtsY |
COG0552 |
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular ... |
246-548 |
0e+00 |
|
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440318 [Multi-domain] Cd Length: 303 Bit Score: 534.22 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 246 FFARLKKGLLKTRVNIGSGFASIFTG-KKIDDELFEDLETQLLTADLGVDTTMKLIDSLTDAANRKQLKDGDALYELMKQ 324
Cdd:COG0552 1 FFERLKEGLSKTRSGLGEKLKSLFSGkKKIDEDLLEELEELLIEADVGVETTEEIIEELRERVKRKKLKDPEELKEALKE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 325 EMAAMLKTAEQPLVIpADKKPFVILMVGVNGVGKTTTIGKLAKQFQDEGKSVMLAAGDTFRAAAVEQLQVWGERNKIPVI 404
Cdd:COG0552 81 ELLEILDPVDKPLAI-EEKKPFVILVVGVNGVGKTTTIGKLAHRLKAEGKSVLLAAGDTFRAAAIEQLEVWGERVGVPVI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 405 AQHTGADSASVVFDAFQAAKARNVDVLIADTAGRLQNKDNLMQELEKIARVMKKIDPDAPHEVMLTIDAGTGQNAISQVN 484
Cdd:COG0552 160 AQKEGADPAAVAFDAIQAAKARGADVVIIDTAGRLHNKKNLMEELKKIKRVIKKLDPDAPHEVLLVLDATTGQNALSQAK 239
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 930309241 485 LFNQCVGLTGITLSKLDGTAKGGVIFAVADKFNIPIRYIGVGEGIEDLRAFNSNDFIDALFSQD 548
Cdd:COG0552 240 VFNEAVGVTGIVLTKLDGTAKGGVVLAIADELGIPIKFIGVGEGIDDLRPFDAEEFVDALFGEE 303
|
|
| PRK10416 |
PRK10416 |
signal recognition particle-docking protein FtsY; Provisional |
245-549 |
0e+00 |
|
signal recognition particle-docking protein FtsY; Provisional
Pssm-ID: 236686 [Multi-domain] Cd Length: 318 Bit Score: 528.90 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 245 GFFARLKKGLLKTRVNIGSGFASIFTGKKIDDELFEDLETQLLTADLGVDTTMKLIDSLTDAANRKQLKDGDALYELMKQ 324
Cdd:PRK10416 15 GWFERLKKGLSKTRENFGEGINGLFAKKKIDEDLLEELEELLIEADVGVETTEEIIEELRERVKRKNLKDPEELKELLKE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 325 EMAAMLKTAEQPLVIpADKKPFVILMVGVNGVGKTTTIGKLAKQFQDEGKSVMLAAGDTFRAAAVEQLQVWGERNKIPVI 404
Cdd:PRK10416 95 ELAEILEPVEKPLNI-EEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVI 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 405 AQHTGADSASVVFDAFQAAKARNVDVLIADTAGRLQNKDNLMQELEKIARVMKKIDPDAPHEVMLTIDAGTGQNAISQVN 484
Cdd:PRK10416 174 AQKEGADPASVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAK 253
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 930309241 485 LFNQCVGLTGITLSKLDGTAKGGVIFAVADKFNIPIRYIGVGEGIEDLRAFNSNDFIDALFSQDE 549
Cdd:PRK10416 254 AFHEAVGLTGIILTKLDGTAKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAEEFVDALLGGED 318
|
|
| ftsY |
TIGR00064 |
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and ... |
273-545 |
3.96e-133 |
|
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 272883 [Multi-domain] Cd Length: 277 Bit Score: 388.54 E-value: 3.96e-133
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 273 KIDDELFEDLETQLLTADLGVDTTMKLIDSLTDAANRKQLKDGDALYELMKQEMAAMLKTAE----QPLVIPADKKPFVI 348
Cdd:TIGR00064 1 KDDEDFFEELEEILLESDVGYEVVEKIIEALKKELKGKKVKDAEKLKEILKEYLKEILKEDLlkntDLELIVEENKPNVI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 349 LMVGVNGVGKTTTIGKLAKQFQDEGKSVMLAAGDTFRAAAVEQLQVWGERNKIPVIAQHTGADSASVVFDAFQAAKARNV 428
Cdd:TIGR00064 81 LFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARNI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 429 DVLIADTAGRLQNKDNLMQELEKIARVMKKIDPDAPHEVMLTIDAGTGQNAISQVNLFNQCVGLTGITLSKLDGTAKGGV 508
Cdd:TIGR00064 161 DVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGTAKGGI 240
|
250 260 270
....*....|....*....|....*....|....*..
gi 930309241 509 IFAVADKFNIPIRYIGVGEGIEDLRAFNSNDFIDALF 545
Cdd:TIGR00064 241 ILSIAYELKLPIKFIGVGEKIDDLAPFDADWFVEALF 277
|
|
| FtsY |
cd17874 |
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle ... |
346-544 |
1.03e-111 |
|
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle (SRP) receptor (SR), is homologous to the SRP receptor alpha-subunit (SRalpha) of the eukaryotic SR. It interacts with the signal-recognition particle (SRP) and is required for the co-translational membrane targeting of proteins.
Pssm-ID: 349783 Cd Length: 199 Bit Score: 330.69 E-value: 1.03e-111
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 346 FVILMVGVNGVGKTTTIGKLAKQFQDEGKSVMLAAGDTFRAAAVEQLQVWGERNKIPVIAQHTGADSASVVFDAFQAAKA 425
Cdd:cd17874 1 FVILFVGVNGVGKTTTIGKLAHYLKNQGKKVVLAAGDTFRAAAVEQLEEWAERLGVPVISQNEGADPAAVAFDAIQAAKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 426 RNVDVLIADTAGRLQNKDNLMQELEKIARVMKKIDPDAPHEVMLTIDAGTGQNAISQVNLFNQCVGLTGITLSKLDGTAK 505
Cdd:cd17874 81 RGIDVVLIDTAGRLHTKKNLMEELKKIKRVIKKKDPEAPHEVLLVLDATTGQNALEQAKEFNEAVGLTGIILTKLDGTAK 160
|
170 180 190
....*....|....*....|....*....|....*....
gi 930309241 506 GGVIFAVADKFNIPIRYIGVGEGIEDLRAFNSNDFIDAL 544
Cdd:cd17874 161 GGIVLSIADELKIPVKFVGVGEGIDDLRPFDPEAFVEAL 199
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
345-545 |
7.48e-98 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 295.09 E-value: 7.48e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 345 PFVILMVGVNGVGKTTTIGKLAKQFQDEG-KSVMLAAGDTFRAAAVEQLQVWGERNKIPVIAQHTGADSASVVFDAFQAA 423
Cdd:smart00962 1 PGVILLVGPNGVGKTTTIAKLAARLKLKGgKKVLLVAADTFRAAAVEQLKTYAEILGVVPVAGGEGADPVAVAKDAVELA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 424 KARNVDVLIADTAGRLQNKDNLMQELEKIARVMKkidpdaPHEVMLTIDAGTGQNAISQVNLFNQCVGLTGITLSKLDGT 503
Cdd:smart00962 81 KARGYDVVLIDTAGRLHNDENLMEELKKIKRVIK------PDEVLLVSDATTGQDAVEQAKAFNEALGLTGIILTKLDGT 154
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 930309241 504 AKGGVIFAVADKFNIPIRYIGVGEGIEDLRAFNSNDFIDALF 545
Cdd:smart00962 155 AKGGAALSIAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLL 196
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
346-544 |
4.16e-94 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 285.20 E-value: 4.16e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 346 FVILMVGVNGVGKTTTIGKLAKQFQDEGKSVMLAAGDTFRAAAVEQLQVWGERNKIPVIAQHTGADSASVVFDAFQAAKA 425
Cdd:pfam00448 1 NVILLVGLQGSGKTTTIAKLAAYLKKKGKKVLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKTGADPAAVAFDAVEKAKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 426 RNVDVLIADTAGRLQNKDNLMQELEKIARVMKkidpdaPHEVMLTIDAGTGQNAISQVNLFNQCVGLTGITLSKLDGTAK 505
Cdd:pfam00448 81 ENYDVVLVDTAGRLQNDKNLMDELKKIKRVVA------PDEVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDGDAK 154
|
170 180 190
....*....|....*....|....*....|....*....
gi 930309241 506 GGVIFAVADKFNIPIRYIGVGEGIEDLRAFNSNDFIDAL 544
Cdd:pfam00448 155 GGAALSIVAETGKPIKFIGVGEKIDDLEPFDPERFVSRL 193
|
|
| SRP_G_like |
cd03115 |
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition ... |
346-544 |
3.11e-83 |
|
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognate receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349769 [Multi-domain] Cd Length: 193 Bit Score: 257.30 E-value: 3.11e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 346 FVILMVGVNGVGKTTTIGKLAKQFQDEGKSVMLAAGDTFRAAAVEQLQVWGERNKIPVIAQHTGADSASVVFDAFQAAKA 425
Cdd:cd03115 1 NVILLVGLQGSGKTTTLAKLARYYQEKGKKVLLIAADTFRAAAVEQLKTLAEKLGVPVFESYTGTDPASIAQEAVEKAKL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 426 RNVDVLIADTAGRLQNKDNLMQELEKIARVmkkidpDAPHEVMLTIDAGTGQNAISQVNLFNQCVGLTGITLSKLDGTAK 505
Cdd:cd03115 81 EGYDVLLVDTAGRLQKDEPLMEELKKVKEV------ESPDEVLLVLDATTGQEALSQAKAFNEAVGLTGVILTKLDGTAK 154
|
170 180 190
....*....|....*....|....*....|....*....
gi 930309241 506 GGVIFAVADKFNIPIRYIGVGEGIEDLRAFNSNDFIDAL 544
Cdd:cd03115 155 GGAALSIVAETKKPIKFIGVGEKPEDLEPFDPERFVSAL 193
|
|
| PRK14974 |
PRK14974 |
signal recognition particle-docking protein FtsY; |
216-546 |
2.63e-76 |
|
signal recognition particle-docking protein FtsY;
Pssm-ID: 237875 [Multi-domain] Cd Length: 336 Bit Score: 244.50 E-value: 2.63e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 216 AAEQAEAERLEQQRIAAEEAKAAEKPKKEGFFARLKkgllktrvnigsgfASIFTGKKIDDELfEDLETQLLTADLGVDT 295
Cdd:PRK14974 19 KIEEEEEEEAPEAEEEEEEEDEEEKKEKPGFFDKAK--------------ITEIKEKDIEDLL-EELELELLESDVALEV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 296 TMKLIDSL--------------TDAANRKQLKDgdALYELMKQEmaamlKTAEQPLVIPADKKPFVILMVGVNGVGKTTT 361
Cdd:PRK14974 84 AEEILESLkeklvgkkvkrgedVEEIVKNALKE--ALLEVLSVG-----DLFDLIEEIKSKGKPVVIVFVGVNGTGKTTT 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 362 IGKLAKQFQDEGKSVMLAAGDTFRAAAVEQLQVWGERNKIPVIAQHTGADSASVVFDAFQAAKARNVDVLIADTAGRLQN 441
Cdd:PRK14974 157 IAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKARGIDVVLIDTAGRMHT 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 442 KDNLMQELEKIARVMKkidpdaPHEVMLTIDAGTGQNAISQVNLFNQCVGLTGITLSKLDGTAKGGVIFAVADKFNIPIR 521
Cdd:PRK14974 237 DANLMDELKKIVRVTK------PDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTKVDADAKGGAALSIAYVIGKPIL 310
|
330 340
....*....|....*....|....*
gi 930309241 522 YIGVGEGIEDLRAFNSNDFIDALFS 546
Cdd:PRK14974 311 FLGVGQGYDDLIPFDPDWFVDKLLG 335
|
|
| Ffh |
COG0541 |
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular ... |
260-536 |
1.01e-64 |
|
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440307 [Multi-domain] Cd Length: 423 Bit Score: 216.81 E-value: 1.01e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 260 NIGSGFASIF---TGK-KIDDELFEDL--ETQ--LLTADLGVDTTMKLIDSLTDAAN----RKQLKDGDALYELMKQEMA 327
Cdd:COG0541 4 NLSERLQGAFkklRGKgRLTEENIKEAlrEVRraLLEADVNLKVVKDFIERVKERALgeevLKSLTPGQQVIKIVHDELV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 328 AMLKTAEQPLVIpADKKPFVILMVGVNGVGKTTTIGKLAKQFQDEGKSVMLAAGDTFRAAAVEQLQVWGERNKIPVIAQH 407
Cdd:COG0541 84 ELLGGENEELNL-AKKPPTVIMMVGLQGSGKTTTAAKLAKYLKKKGKKPLLVAADVYRPAAIEQLKTLGEQIGVPVFPEE 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 408 TGADSASVVFDAFQAAKARNVDVLIADTAGRLQNKDNLMQELEKIARVMKkidpdaPHEVMLTIDAGTGQNAISQVNLFN 487
Cdd:COG0541 163 DGKDPVDIAKRALEYAKKNGYDVVIVDTAGRLHIDEELMDELKAIKAAVN------PDETLLVVDAMTGQDAVNVAKAFN 236
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 930309241 488 QCVGLTGITLSKLDGTAKGGVIFAVADKFNIPIRYIGVGEGIEDLRAFN 536
Cdd:COG0541 237 EALGLTGVILTKLDGDARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFH 285
|
|
| SRP_G |
cd18539 |
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) ... |
347-535 |
2.14e-60 |
|
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349786 Cd Length: 193 Bit Score: 197.82 E-value: 2.14e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 347 VILMVGVNGVGKTTTIGKLAKQFQDEGKSVMLAAGDTFRAAAVEQLQVWGERNKIPVIAQHTGADSASVVFDAFQAAKAR 426
Cdd:cd18539 2 VILLVGLQGSGKTTTAAKLALYLKKKGKKVLLVAADVYRPAAIEQLQTLGEQVGVPVFESGDGQSPVDIAKRALEKAKEE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 427 NVDVLIADTAGRLQNKDNLMQELEKIARVMKkidpdaPHEVMLTIDAGTGQNAISQVNLFNQCVGLTGITLSKLDGTAKG 506
Cdd:cd18539 82 GFDVVIVDTAGRLHIDEELMDELKEIKEVLN------PDEVLLVVDAMTGQDAVNVAKAFNERLGLTGVVLTKLDGDARG 155
|
170 180
....*....|....*....|....*....
gi 930309241 507 GVIFAVADKFNIPIRYIGVGEGIEDLRAF 535
Cdd:cd18539 156 GAALSIRHVTGKPIKFIGVGEKIEDLEPF 184
|
|
| PRK00771 |
PRK00771 |
signal recognition particle protein Srp54; Provisional |
272-541 |
2.94e-57 |
|
signal recognition particle protein Srp54; Provisional
Pssm-ID: 179118 [Multi-domain] Cd Length: 437 Bit Score: 197.74 E-value: 2.94e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 272 KKIDDELFEDLETQLLTADLGVDTTMKLIDSLTDAANRKQLKDG----DALYELMKQEMAAMLKTAEQPLVIPadKKPFV 347
Cdd:PRK00771 20 EKTVKEVVKDIQRALLQADVNVKLVKELSKSIKERALEEEPPKGltprEHVIKIVYEELVKLLGEETEPLVLP--LKPQT 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 348 ILMVGVNGVGKTTTIGKLAKQFQDEGKSVMLAAGDTFRAAAVEQLQVWGERNKIPVIAQHTGADSASVVFDAFQAAKarN 427
Cdd:PRK00771 98 IMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKFK--K 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 428 VDVLIADTAGRLQNKDNLMQELEKIARVMKkidpdaPHEVMLTIDAGTGQNAISQVNLFNQCVGLTGITLSKLDGTAKGG 507
Cdd:PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVK------PDEVLLVIDATIGQQAKNQAKAFHEAVGIGGIIITKLDGTAKGG 249
|
250 260 270
....*....|....*....|....*....|....
gi 930309241 508 VIFAVADKFNIPIRYIGVGEGIEDLRAFNSNDFI 541
Cdd:PRK00771 250 GALSAVAETGAPIKFIGTGEKIDDLERFDPDRFI 283
|
|
| SRP54_G |
cd17875 |
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) ... |
346-541 |
1.16e-47 |
|
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349784 Cd Length: 193 Bit Score: 164.29 E-value: 1.16e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 346 FVILMVGVNGVGKTTTIGKLAKQFQDEGKSVMLAAGDTFRAAAVEQLQVWGERNKIPVIAQHTGADSASVVFDAFQAAKA 425
Cdd:cd17875 1 NVIMFVGLQGSGKTTTAAKLAYYYQKKGYKVGLVCADTFRAGAFDQLKQNATKARVPFYGSYTEKDPVKIAKEGVEKFKK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 426 RNVDVLIADTAGRLQNKDNLMQELEKIARVMKkidpdaPHEVMLTIDAGTGQNAISQVNLFNQCVGLTGITLSKLDGTAK 505
Cdd:cd17875 81 EKFDIIIVDTSGRHKQEEELFEEMKQISDAVK------PDEVILVIDASIGQAAEDQAKAFKEAVDIGSVIITKLDGHAK 154
|
170 180 190
....*....|....*....|....*....|....*..
gi 930309241 506 -GGVIFAVAdKFNIPIRYIGVGEGIEDLRAFNSNDFI 541
Cdd:cd17875 155 gGGALSAVA-ATGAPIIFIGTGEHIDDLEPFDPKRFV 190
|
|
| SRalpha_C |
cd17876 |
C-terminal domain of signal recognition particle receptor alpha subunit; The ... |
346-544 |
2.80e-46 |
|
C-terminal domain of signal recognition particle receptor alpha subunit; The signal-recognition particle (SRP) receptor (SR) alpha-subunit (SRalpha) of the eukaryotic SR interacts with the signal-recognition particle (SRP) and is essential for the co-translational membrane targeting of proteins.
Pssm-ID: 349785 Cd Length: 204 Bit Score: 161.24 E-value: 2.80e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 346 FVILMVGVNGVGKTTTIGKLAKQFQDEGKSVMLAAGDTFRAAAVEQLQVWGERNKIPVIAQHTGADSASVVFDAFQAAKA 425
Cdd:cd17876 1 YVIVFCGVNGVGKSTNLAKIAYWLLSNGFRVLIAACDTFRSGAVEQLRTHARRLGVELYEKGYGKDPAAVAKEAIKYARD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 426 RNVDVLIADTAGRLQNKDNLMQELEKIARVMKkidPDApheVMLTIDAGTGQNAISQVNLFNQCV----------GLTGI 495
Cdd:cd17876 81 QGFDVVLIDTAGRMQNNEPLMRALAKLIKENN---PDL---VLFVGEALVGNDAVDQLKKFNQALadyspsdnprLIDGI 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 930309241 496 TLSKLDgTA--KGGVIFAVADKFNIPIRYIGVGEGIEDLRAFNSNDFIDAL 544
Cdd:cd17876 155 VLTKFD-TIddKVGAALSMVYATGQPIVFVGTGQTYTDLKKLNVKAVVNSL 204
|
|
| SRP54_euk |
TIGR01425 |
signal recognition particle protein SRP54; This model represents examples from the eukaryotic ... |
261-544 |
1.31e-37 |
|
signal recognition particle protein SRP54; This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Pssm-ID: 273615 [Multi-domain] Cd Length: 428 Bit Score: 143.82 E-value: 1.31e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 261 IGSGFASIFTGKKIDDE----LFEDLETQLLTADLGVDTTMKLIDSLTDAANRKQLKDGDALYELMKQ----EMAAMLKT 332
Cdd:TIGR01425 9 LVTALRSMSSATVIDEEvintMLKEICTALLESDVNPKLVRQMRNNIKKKINLEDIASGINKRKLIQDavfeELCNLVDP 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 333 AEQPlVIPADKKPFVILMVGVNGVGKTTTIGKLAKQFQDEGKSVMLAAGDTFRAAAVEQLQVWGERNKIPVIAQHTGADS 412
Cdd:TIGR01425 89 GVEA-FTPKKGKTCVIMFVGLQGAGKTTTCTKLAYYYKRRGFKPALVCADTFRAGAFDQLKQNATKAGIPFYGSYEESDP 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 413 ASVVFDAFQAAKARNVDVLIADTAGRLQNKDNLMQELEKIARVMKkidpdaPHEVMLTIDAGTGQNAISQVNLFNQCVGL 492
Cdd:TIGR01425 168 VKIASEGVEKFRKEKFDIIIVDTSGRHKQEKELFEEMQQVREAIK------PDSIIFVMDGSIGQAAFGQAKAFKDSVEV 241
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 930309241 493 TGITLSKLDGTAK-GGVIFAVADKfNIPIRYIGVGEGIEDLRAFNSNDFIDAL 544
Cdd:TIGR01425 242 GSVIITKLDGHAKgGGALSAVAAT-KSPIIFIGTGEHVDEFEIFDAEPFVSKL 293
|
|
| FlhF |
COG1419 |
Flagellar biosynthesis GTPase FlhF [Cell motility]; |
276-545 |
7.22e-34 |
|
Flagellar biosynthesis GTPase FlhF [Cell motility];
Pssm-ID: 441029 [Multi-domain] Cd Length: 361 Bit Score: 131.91 E-value: 7.22e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 276 DELFEDLETQLLTADLGVDTTMKLIDSLtdaanrKQLKDGDALYELMKQEMAAMLKTAEQPlvIPADKKpfVILMVGVNG 355
Cdd:COG1419 105 PPELAELLERLLEAGVSPELARELLEKL------PEDLSAEEAWRALLEALARRLPVAEDP--LLDEGG--VIALVGPTG 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 356 VGKTTTIGKLAKQF-QDEGKSVMLAAGDTFRAAAVEQLQVWGERNKIPVIAQHTGADSASVVfdafqaAKARNVDVLIAD 434
Cdd:COG1419 175 VGKTTTIAKLAARFvLRGKKKVALITTDTYRIGAVEQLKTYARILGVPVEVAYDPEELKEAL------ERLRDKDLVLID 248
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 435 TAGRLQNKDNLMQELEKIARVMKKIdpdaphEVMLTIDAGT-GQNAISQVNLFNQcVGLTGITLSKLDGTAKGGVIFAVA 513
Cdd:COG1419 249 TAGRSPRDPELIEELKALLDAGPPI------EVYLVLSATTkYEDLKEIVEAFSS-LGLDGLILTKLDETASLGSILNLL 321
|
250 260 270
....*....|....*....|....*....|...
gi 930309241 514 DKFNIPIRYIGVGEGI-EDLRAFNSNDFIDALF 545
Cdd:COG1419 322 IRTGLPLSYITNGQRVpEDIEVADPERLARLLL 354
|
|
| FlhF |
cd17873 |
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP) ... |
347-532 |
1.50e-28 |
|
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP)-type GTPase that is essential for the placement and assembly of polar flagella. It is similar to the 54 kd subunit (SRP54) of the signal recognition particle (SRP) that mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR).
Pssm-ID: 349782 [Multi-domain] Cd Length: 189 Bit Score: 112.26 E-value: 1.50e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 347 VILMVGVNGVGKTTTIGKLAKQFQ-DEGKSVMLAAGDTFRAAAVEQLQVWGERNKIPVIAqhtgADSAsvvfDAFQAAKA 425
Cdd:cd17873 2 VIALVGPTGVGKTTTLAKLAARYVlKKGKKVALITTDTYRIGAVEQLKTYAEIMGIPVEV----AEDP----EDLADALE 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 426 R--NVDVLIADTAGRLQNKDNLMQELEKIARVMKKIdpdaphEVMLTIDAGT-GQNAISQVNLFnQCVGLTGITLSKLDG 502
Cdd:cd17873 74 RlsDRDLILIDTAGRSPRDKEQLEELKELLGAGEDI------EVHLVLSATTkAKDLKEIIERF-SPLGYRGLILTKLDE 146
|
170 180 190
....*....|....*....|....*....|.
gi 930309241 503 TAKGGVIFAVADKFNIPIRYIGVGEGI-EDL 532
Cdd:cd17873 147 TTSLGSVLSVLAESQLPVSYVTTGQRVpEDI 177
|
|
| flhF |
PRK05703 |
flagellar biosynthesis protein FlhF; |
153-546 |
6.50e-23 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235570 [Multi-domain] Cd Length: 424 Bit Score: 101.12 E-value: 6.50e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 153 ERIAA--EQAEAERLEQERIAAERLEAERLEQERIAAEHAEAERLEQQRIAAEQAEAEHLEQERIAAEQAEAERLEQQRI 230
Cdd:PRK05703 46 EVTAAvdEDETPKKNPVLREEKRKPAKSILSLQALLEKRPSRTNSQDALLQAENALPEWKKELEKPSEPKEEEPKAAAES 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 231 AAEEAKaaekpkkegfFARLK------KGLLKTRVnigsgfASIFTGKKIDDElFEDLETQLLTADLGVDTTMKLIDSLT 304
Cdd:PRK05703 126 KVVQKE----------LDELRdelkelKNLLEDQL------SGLRQVERIPPE-FAELYKRLKRSGLSPEIAEKLLKLLL 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 305 DAANRKQLKDGDALYELMKQemaaMLKTAEQPLVIPadKKpfVILMVGVNGVGKTTTIGKLAKQF--QDEGKSVMLAAGD 382
Cdd:PRK05703 189 EHMPPRERTAWRYLLELLAN----MIPVRVEDILKQ--GG--VVALVGPTGVGKTTTLAKLAARYalLYGKKKVALITLD 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 383 TFRAAAVEQLQVWGERNKIPVIaqhtgadsasVVFDAFQAAKA----RNVDVLIADTAGRLQNKDNLMQELEKIARvmkk 458
Cdd:PRK05703 261 TYRIGAVEQLKTYAKIMGIPVE----------VVYDPKELAKAleqlRDCDVILIDTAGRSQRDKRLIEELKALIE---- 326
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 459 iDPDAPHEVMLTIDAgTGQN----AIsqVNLFNQCvGLTGITLSKLDGTAKGGVIFAVADKFNIPIRYIGVGEGI-EDLR 533
Cdd:PRK05703 327 -FSGEPIDVYLVLSA-TTKYedlkDI--YKHFSRL-PLDGLIFTKLDETSSLGSILSLLIESGLPISYLTNGQRVpDDIK 401
|
410
....*....|...
gi 930309241 534 AFNSNDFIDALFS 546
Cdd:PRK05703 402 VANPEELVRLLLG 414
|
|
| FlhF |
TIGR03499 |
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility] |
181-437 |
5.68e-17 |
|
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility]
Pssm-ID: 274609 [Multi-domain] Cd Length: 282 Bit Score: 81.23 E-value: 5.68e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 181 EQERIAAEHAEAERLEQQRIAAEQAEAEHLEQERIAAEQAEAERLEQQRIAAEEAKAAEKPKkegffarlKKGLLKTRVN 260
Cdd:TIGR03499 54 EAAAASAEEEASKALEQADPKPLSATAEPLELPAPQEEPAAPAAQAAEPLLPEEELRKELEA--------LRELLERLLA 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 261 IGSgfasiftgKKIDDELFEDLETQLLTADLGVDTTMKLIDSLtdaanrKQLKDGDALYELMKQEMAAMLKTAeqPLVIP 340
Cdd:TIGR03499 126 GLA--------WLQRPPERAKLYERLLEAGVSEELARELLEKL------PEDADAEDAWRWLREALEGMLPVK--PEEDP 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 341 ADKKPFVILMVGVNGVGKTTTIGKLAKQF--QDEGKSVMLAAGDTFRAAAVEQLQVWGERNKIPVIAQHTGADsasvvfd 418
Cdd:TIGR03499 190 ILEQGGVIALVGPTGVGKTTTLAKLAARFalEHGKKKVALITTDTYRIGAVEQLKTYAEILGIPVKVARDPKE------- 262
|
250 260
....*....|....*....|.
gi 930309241 419 aFQAAKA--RNVDVLIADTAG 437
Cdd:TIGR03499 263 -LREALDrlRDKDLILIDTAG 282
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
15-230 |
6.19e-17 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 84.60 E-value: 6.19e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 15 REAERIAAEKAEAEhVEQERIAAEARDAERLAIADAELAAAEKAEQQRRDEAARLAEQQEAMLLQQEQQATEQAQREAER 94
Cdd:COG1196 239 AELEELEAELEELE-AELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEER 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 95 IAAEKAEAEHVEQQRIAAERLEAERLEQERIAAERLEAERLEQERIAAERLEAERLEQERIAAEQAEAERLEQERIAAER 174
Cdd:COG1196 318 LEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAE 397
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 930309241 175 LEAERLE-QERIAAEHAEAERLEQQRIAAEQAEAEHLEQERIAAEQAEAERLEQQRI 230
Cdd:COG1196 398 LAAQLEElEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAEL 454
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
15-228 |
2.70e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 82.29 E-value: 2.70e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 15 REAERIAAEKAEAEHVEQERIAAEARDAERLAIADAELAAAEKAEQQRRDEAARLA--EQQEAMLLQQEQQATEQAQREA 92
Cdd:COG1196 243 ELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELArlEQDIARLEERRRELEERLEELE 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 93 ERIAAEKAEAEHVEQQRIAAERLEAERLEQERIAAERLEAERLEQERIAAERLEAERLEQERIAAEQAEAERLEQERIAA 172
Cdd:COG1196 323 EELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQL 402
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 930309241 173 ERLEA--ERLEQERIAAEHAEAERLEQQRIAAEQAEAEHLEQERIAAEQAEAERLEQQ 228
Cdd:COG1196 403 EELEEaeEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEA 460
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
18-230 |
1.12e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 80.37 E-value: 1.12e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 18 ERIAAEKAEAEHVEQERIAAEARDAERLAIADAELAAAEKAEQQRRDEAARLAEQQEAMLLQQEQQATEQAQREAERIAA 97
Cdd:COG1196 288 AEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEAL 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 98 EKAEAEHVEQQRiAAERLEAERLEQERIAAERLEAERLEQERIAAERLEAERLEQERIAAEQAEAERLEQERIAAERLEA 177
Cdd:COG1196 368 LEAEAELAEAEE-ELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEE 446
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 930309241 178 ERLEQERIAAEHAEAERLEQQRIAAEQAEAEHLEQERIAAEQAEAERLEQQRI 230
Cdd:COG1196 447 AAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEA 499
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
18-230 |
1.55e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 79.98 E-value: 1.55e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 18 ERIAAEKAEAEHVEQERIAAEARDAERLAIADAELAAAEKAEQQRRDEAARLAEQQEAMLLQQEQQATEQAQREAERIAA 97
Cdd:COG1196 267 AELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEEL 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 98 EKAEAEhVEQQRIAAERLEAERLEQERIAAERLEA-ERLEQERIAAERLEAERLEQERIAAEQAEAERLEQERIAAERLE 176
Cdd:COG1196 347 EEAEEE-LEEAEAELAEAEEALLEAEAELAEAEEElEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEE 425
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 930309241 177 AERLEQERIAAEHAEAERLEQQRIAAEQAEAEHLEQERIAAEQAEAERLEQQRI 230
Cdd:COG1196 426 LEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAAL 479
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
15-254 |
1.93e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 79.60 E-value: 1.93e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 15 REAERIAAEKAEAEHVEQERIAAEARDAERLAIADAELAAAEKAEQQRRDEAARLAEQQEAML-LQQEQQATEQAQREAE 93
Cdd:COG1196 278 ELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEeLEEELEEAEEELEEAE 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 94 RIAAEKAEAEHVEQQRIAAERLEAERLEQERIAAERLEAERLEQERIAAERLEAERLEQERIAAEQAE-AERLEQERIAA 172
Cdd:COG1196 358 AELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEElEEALAELEEEE 437
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 173 ERLEAERLEQERIAAEHAEAERLEQQRIAAEQAEAEHLEQERIAAEQAEAERLEQQRIAAEEAKAAEKPKKEGFFARLKK 252
Cdd:COG1196 438 EEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLA 517
|
..
gi 930309241 253 GL 254
Cdd:COG1196 518 GL 519
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2-225 |
3.64e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 78.83 E-value: 3.64e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 2 LLQQEQQATEQAQREAERIAAEKAEAEHVEQERIAAEARDAERLAIADAELAAAEKAEQQRRDEAARLAEQQEAMLLQQE 81
Cdd:COG1196 293 LLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEA 372
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 82 QQATEQAQREA---ERIAAEKAEAEHVEQQRIAAERLEAERLEQERIAAERLEAERLEQERIAAERLEAERLEQERIAAE 158
Cdd:COG1196 373 ELAEAEEELEElaeELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEA 452
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 930309241 159 QAEAERLEQERIAAERLEAERLEQERIAAEHAEAERLEQQRIAAEQAEAEHLEQERIAAEQAEAERL 225
Cdd:COG1196 453 ELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGL 519
|
|
| PTZ00266 |
PTZ00266 |
NIMA-related protein kinase; Provisional |
99-199 |
1.69e-13 |
|
NIMA-related protein kinase; Provisional
Pssm-ID: 173502 [Multi-domain] Cd Length: 1021 Bit Score: 73.62 E-value: 1.69e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 99 KAEAEHVEQQRIAAERLEAERLEQERIAAERLeaERLEQERIaaERLEAERLeqERIAAEQAEAERLEQERIAAERLEAE 178
Cdd:PTZ00266 429 RVDKDHAERARIEKENAHRKALEMKILEKKRI--ERLEREER--ERLERERM--ERIERERLERERLERERLERDRLERD 502
|
90 100
....*....|....*....|..
gi 930309241 179 RLEQ-ERIAAEHAEAERLEQQR 199
Cdd:PTZ00266 503 RLDRlERERVDRLERDRLEKAR 524
|
|
| PTZ00266 |
PTZ00266 |
NIMA-related protein kinase; Provisional |
109-214 |
5.52e-13 |
|
NIMA-related protein kinase; Provisional
Pssm-ID: 173502 [Multi-domain] Cd Length: 1021 Bit Score: 72.08 E-value: 5.52e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 109 RIAAERLEAERLEQERIAAERLEAERLEQERIA-AERLEAERLEQERIaaEQAEAERLEQERIAAERLEAERLEQERIaa 187
Cdd:PTZ00266 429 RVDKDHAERARIEKENAHRKALEMKILEKKRIErLEREERERLERERM--ERIERERLERERLERERLERDRLERDRL-- 504
|
90 100
....*....|....*....|....*..
gi 930309241 188 ehaeaERLEQQRIaaEQAEAEHLEQER 214
Cdd:PTZ00266 505 -----DRLERERV--DRLERDRLEKAR 524
|
|
| SRP54_N |
smart00963 |
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle ... |
260-330 |
5.55e-13 |
|
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species.
Pssm-ID: 214941 [Multi-domain] Cd Length: 77 Bit Score: 64.11 E-value: 5.55e-13
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 930309241 260 NIGSGFASIFTGKKIDDELFEDLETQLLTADLGVDTTMKLIDSLTDAANR---KQLKDGDALYELMKQEMAAML 330
Cdd:smart00963 4 ALGKLLGELFLTEKDDEELLEELEEALLEADVGVEVVKEIIERVKEKAKGevlKGLTPKQEVKKILKEELVKIL 77
|
|
| PTZ00266 |
PTZ00266 |
NIMA-related protein kinase; Provisional |
94-184 |
1.44e-12 |
|
NIMA-related protein kinase; Provisional
Pssm-ID: 173502 [Multi-domain] Cd Length: 1021 Bit Score: 70.54 E-value: 1.44e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 94 RIAAEKAEAEHVEQQRIAAERLEAERLEQERIaaERLEAERLEQ------ERIAAERLEAERLEQERIAAEQAEAERLEQ 167
Cdd:PTZ00266 429 RVDKDHAERARIEKENAHRKALEMKILEKKRI--ERLEREERERlerermERIERERLERERLERERLERDRLERDRLDR 506
|
90
....*....|....*...
gi 930309241 168 -ERIAAERLEAERLEQER 184
Cdd:PTZ00266 507 lERERVDRLERDRLEKAR 524
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
344-459 |
4.38e-12 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 63.93 E-value: 4.38e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 344 KPFVILMVGVNGVGKTTTIGKLAKQFQDEGKSVMLAAGDTFRAAAVEQLQVwgernkIPVIAQHTGADSASVVFDAFQAA 423
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLL------IIVGGKKASGSGELRLRLALALA 74
|
90 100 110
....*....|....*....|....*....|....*.
gi 930309241 424 KARNVDVLIADTAGRLQNKDNLMQELEKIARVMKKI 459
Cdd:smart00382 75 RKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLL 110
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
28-228 |
5.43e-12 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 68.61 E-value: 5.43e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 28 EHVEQERIAAEARDAERLAIADAELAAAEKAEQQRRDEAARLAEQQEAMLLqqeqqateQAQREAERIAAE--KAEAEHV 105
Cdd:pfam17380 294 EKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAM--------ERERELERIRQEerKRELERI 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 106 EQQRIAA--------ERLEAERLEQERIAAERLEAER----LEQERiaAERLEAERLEQERIAAEQAEAERLEQERIAAE 173
Cdd:pfam17380 366 RQEEIAMeisrmrelERLQMERQQKNERVRQELEAARkvkiLEEER--QRKIQQQKVEMEQIRAEQEEARQREVRRLEEE 443
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 930309241 174 RL-EAERLEQERIAAEHaEAERLEQQRiaaEQAEAEHLEQERIAAEQAEAERLEQQ 228
Cdd:pfam17380 444 RArEMERVRLEEQERQQ-QVERLRQQE---EERKRKKLELEKEKRDRKRAEEQRRK 495
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
15-225 |
1.28e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 67.65 E-value: 1.28e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 15 REAERIAAEKAEAEHVEQERIAAEARDAERLAIADAELAAAEKAEQQRRDEAARLAEQQEAML-LQQEQQATEQAQREAE 93
Cdd:COG1196 313 ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAeAEEELEELAEELLEAL 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 94 RIAAEKAEAEHVEQQRIAAERLEAERLEQERIAAE----RLEAERLEQEriaaerlEAERLEQERIAAEQAEAERLEQER 169
Cdd:COG1196 393 RAAAELAAQLEELEEAEEALLERLERLEEELEELEealaELEEEEEEEE-------EALEEAAEEEAELEEEEEALLELL 465
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 930309241 170 IAAERLEAERLEQERIAAEHAEAERLEQQRIAAEQAEAEHLEQERIAAEQAEAERL 225
Cdd:COG1196 466 AELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRG 521
|
|
| PRK12726 |
PRK12726 |
flagellar biosynthesis regulator FlhF; Provisional |
347-531 |
2.51e-11 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183704 [Multi-domain] Cd Length: 407 Bit Score: 65.53 E-value: 2.51e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 347 VILMVGVNGVGKTTTIGKLAKQFQDEGKSVMLAAGDTFRAAAVEQLQVWGERNKIPVIAqhtgADSASVVFDAFQAAKAR 426
Cdd:PRK12726 208 IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIV----ATSPAELEEAVQYMTYV 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 427 N-VDVLIADTAGRlqnkdNLMQElEKIARVMKKIDPDAPHEVMLTIDAGTGQNAISQVNLFNQCVGLTGITLSKLDGTAK 505
Cdd:PRK12726 284 NcVDHILIDTVGR-----NYLAE-ESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDETTR 357
|
170 180
....*....|....*....|....*.
gi 930309241 506 GGVIFAVADKFNIPIRYIGVGEGIED 531
Cdd:PRK12726 358 IGDLYTVMQETNLPVLYMTDGQNITE 383
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
15-229 |
2.97e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 66.50 E-value: 2.97e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 15 REAERIAAEKAEAEHVEQERIAAEARDAERLAIADAELAAAEKAEQQRRDEAARLAEQQEAMLLQQEQQATEQAQREAER 94
Cdd:COG1196 553 VEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARL 632
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 95 IAAEKAEAEHVEQQRIAAERLEAERLEQERIAAERLEAERLEQERIAAERLEAERLEQERIAAEQAEAERLEQERIAAER 174
Cdd:COG1196 633 EAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEA 712
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 930309241 175 LEAERLEQERIAAEHAEAERLEQQRIAAEQAEAEHLEQE---------RIAAEQAEAERLEQQR 229
Cdd:COG1196 713 EEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEaleelpeppDLEELERELERLEREI 776
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
15-229 |
1.12e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 64.78 E-value: 1.12e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 15 REAERiAAEKAEAEHVEQERIAAEARDAE--RLAIADAELAAAEKAEQQRRDEAARLAEQQEAMLLqqeqqATEQAQREA 92
Cdd:PTZ00121 1516 KKAEE-AKKADEAKKAEEAKKADEAKKAEekKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMAL-----RKAEEAKKA 1589
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 93 ERIAAEKAEAEHVEQQRIAAErlEAERLEQERIAAERLEAErlEQERIAAERLEAERLEQERIAAEQAEAErlEQERIAA 172
Cdd:PTZ00121 1590 EEARIEEVMKLYEEEKKMKAE--EAKKAEEAKIKAEELKKA--EEEKKKVEQLKKKEAEEKKKAEELKKAE--EENKIKA 1663
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 930309241 173 ERLEAERLEQERIAAEHAEAErlEQQRIAAEQAEAEhlEQERIAAEQAEAERLEQQR 229
Cdd:PTZ00121 1664 AEEAKKAEEDKKKAEEAKKAE--EDEKKAAEALKKE--AEEAKKAEELKKKEAEEKK 1716
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
16-230 |
1.87e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 64.01 E-value: 1.87e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 16 EAERIAAEKAEAEHV---EQERIAAEARDAERLAIADAELAAAEKAEQQRRDEAARLAEQQEAMLLQQEQQATEQAQREA 92
Cdd:PTZ00121 1543 EEKKKADELKKAEELkkaEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKA 1622
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 93 ERIAAEKAEAEHVEQ--QRIAAERLEAERL----EQERIAAERLEAERLEQERIAAERLEAErlEQERIAAEQAEAErlE 166
Cdd:PTZ00121 1623 EELKKAEEEKKKVEQlkKKEAEEKKKAEELkkaeEENKIKAAEEAKKAEEDKKKAEEAKKAE--EDEKKAAEALKKE--A 1698
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 930309241 167 QERIAAERLEAERLEQERIAAEHAEAErlEQQRIAAEQAEAEHlEQERIAAEQAEAERLEQQRI 230
Cdd:PTZ00121 1699 EEAKKAEELKKKEAEEKKKAEELKKAE--EENKIKAEEAKKEA-EEDKKKAEEAKKDEEEKKKI 1759
|
|
| PTZ00266 |
PTZ00266 |
NIMA-related protein kinase; Provisional |
93-154 |
4.03e-10 |
|
NIMA-related protein kinase; Provisional
Pssm-ID: 173502 [Multi-domain] Cd Length: 1021 Bit Score: 62.83 E-value: 4.03e-10
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 930309241 93 ERIAAEKAEAEHVEqqRIAAERLEAERLEQERIAAERLEAERLEQ-ERIAAERLEAERLEQER 154
Cdd:PTZ00266 464 EREERERLERERME--RIERERLERERLERERLERDRLERDRLDRlERERVDRLERDRLEKAR 524
|
|
| DUF4670 |
pfam15709 |
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins ... |
90-229 |
4.04e-10 |
|
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins in this family are typically between 373 and 763 amino acids in length.
Pssm-ID: 464815 [Multi-domain] Cd Length: 522 Bit Score: 62.28 E-value: 4.04e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 90 REAERIAAEKAEAEHVEQQRIAAERLEAERLEQERIAAERLEAER-------LEQERIAAE-RLEAERLEQERIAAEQAE 161
Cdd:pfam15709 328 REQEKASRDRLRAERAEMRRLEVERKRREQEEQRRLQQEQLERAEkmreeleLEQQRRFEEiRLRKQRLEEERQRQEEEE 407
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 930309241 162 AERLEQERIAAERleaERLEQERIAAEHAEAERLEQQRiAAEQAEAEHLEQ----ERIAAEQ------AEAERLEQQR 229
Cdd:pfam15709 408 RKQRLQLQAAQER---ARQQQEEFRRKLQELQRKKQQE-EAERAEAEKQRQkeleMQLAEEQkrlmemAEEERLEYQR 481
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
15-229 |
5.61e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 62.47 E-value: 5.61e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 15 REAERiAAEKAEAEHVEQERIAAEARDAERL-AIADAELAAAEKAEQQRRDEAARLAEQQEAmLLQQEQQATEQAQREAE 93
Cdd:PTZ00121 1528 KKAEE-AKKADEAKKAEEKKKADELKKAEELkKAEEKKKAEEAKKAEEDKNMALRKAEEAKK-AEEARIEEVMKLYEEEK 1605
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 94 RIAAEKAEAEhvEQQRIAAERLEAErlEQERIAAERLEAERLEQERIAAERLEAErlEQERIAAEQaEAERLEQERIAAE 173
Cdd:PTZ00121 1606 KMKAEEAKKA--EEAKIKAEELKKA--EEEKKKVEQLKKKEAEEKKKAEELKKAE--EENKIKAAE-EAKKAEEDKKKAE 1678
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 930309241 174 RL----EAERLEQERIAAEHAEAERLEQQR--IAAEQAEAEHL----EQERIAAEQAEAERLEQQR 229
Cdd:PTZ00121 1679 EAkkaeEDEKKAAEALKKEAEEAKKAEELKkkEAEEKKKAEELkkaeEENKIKAEEAKKEAEEDKK 1744
|
|
| flhF |
PRK14722 |
flagellar biosynthesis regulator FlhF; Provisional |
282-531 |
7.40e-10 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173185 [Multi-domain] Cd Length: 374 Bit Score: 60.89 E-value: 7.40e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 282 LETQLLTADLGVDTTMKLIDSLTDAANRKQLkdgDALYELMKQEMAAMLKT--AEQPLVipadKKPFVILMVGVNGVGKT 359
Cdd:PRK14722 79 LTKYLFAAGFSAQLVRMIVDNLPEGEGYDTL---DAAADWAQSVLAANLPVldSEDALM----ERGGVFALMGPTGVGKT 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 360 TTIGKLAKQ--FQDEGKSVMLAAGDTFRAAAVEQLQVWGERNKIPVIAQHTGADSASVVfdafqaAKARNVDVLIADTAG 437
Cdd:PRK14722 152 TTTAKLAARcvMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLAL------AELRNKHMVLIDTIG 225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 438 RLQNKDNLMQELEKIArvmkkiDPDAPHEVMLTIDAGTGQNAISQV-NLFNQCVG--------LTGITLSKLDGTAKGGV 508
Cdd:PRK14722 226 MSQRDRTVSDQIAMLH------GADTPVQRLLLLNATSHGDTLNEVvQAYRSAAGqpkaalpdLAGCILTKLDEASNLGG 299
|
250 260
....*....|....*....|...
gi 930309241 509 IFAVADKFNIPIRYIGVGEGIED 531
Cdd:PRK14722 300 VLDTVIRYKLPVHYVSTGQKVPE 322
|
|
| PTZ00266 |
PTZ00266 |
NIMA-related protein kinase; Provisional |
139-230 |
8.17e-10 |
|
NIMA-related protein kinase; Provisional
Pssm-ID: 173502 [Multi-domain] Cd Length: 1021 Bit Score: 61.68 E-value: 8.17e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 139 RIAAERLEAERLEQERIAAEQAEAERLEQERIA-AERLEAERLEQERIaaEHAEAERLEQQRIAAEQAEAEHLEQERI-A 216
Cdd:PTZ00266 429 RVDKDHAERARIEKENAHRKALEMKILEKKRIErLEREERERLERERM--ERIERERLERERLERERLERDRLERDRLdR 506
|
90
....*....|....
gi 930309241 217 AEQAEAERLEQQRI 230
Cdd:PTZ00266 507 LERERVDRLERDRL 520
|
|
| SRP54_N |
pfam02881 |
SRP54-type protein, helical bundle domain; |
261-326 |
1.02e-09 |
|
SRP54-type protein, helical bundle domain;
Pssm-ID: 460734 [Multi-domain] Cd Length: 75 Bit Score: 54.78 E-value: 1.02e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 930309241 261 IGSGFASIFTGKKIDDELFED----LETQLLTADLGVDTTMKLIDSLTDAA-NRKQLKDGDALYELMKQEM 326
Cdd:pfam02881 5 LSSLFKGLRGKGKIDEEDLEEalkeLEEALLEADVGVEVVKKIIERLREKAvGEKKLKPPQEVKKILKEEL 75
|
|
| PRK12727 |
PRK12727 |
flagellar biosynthesis protein FlhF; |
347-531 |
1.13e-09 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 60.77 E-value: 1.13e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 347 VILMVGVNGVGKTTTIGKLAKQF--QDEGKSVMLAAGDTFRAAAVEQLQVWGERNKIPViaqHTgADSASVVFDAFQaaK 424
Cdd:PRK12727 352 VIALVGPTGAGKTTTIAKLAQRFaaQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAV---HE-ADSAESLLDLLE--R 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 425 ARNVDVLIADTAGRLQNKDNLMQELE--KIARVMKKidpdaphevMLTIDAGTGQNAISQVNLFNQCVGLTGITLSKLDG 502
Cdd:PRK12727 426 LRDYKLVLIDTAGMGQRDRALAAQLNwlRAARQVTS---------LLVLPANAHFSDLDEVVRRFAHAKPQGVVLTKLDE 496
|
170 180
....*....|....*....|....*....
gi 930309241 503 TAKGGVIFAVADKFNIPIRYIGVGEGIED 531
Cdd:PRK12727 497 TGRFGSALSVVVDHQMPITWVTDGQRVPD 525
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
15-230 |
1.45e-09 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 60.91 E-value: 1.45e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 15 REAERIAAE--KAEAEHVEQERIAAE---ARDAERLAIAdaelaaaekaeQQRRDEAARL---AEQQEAMLLQQEQQATE 86
Cdd:pfam17380 348 RELERIRQEerKRELERIRQEEIAMEisrMRELERLQME-----------RQQKNERVRQeleAARKVKILEEERQRKIQ 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 87 QAQREAERIAAEKAEAEHVEQQRIAAERL-EAERLEQERIA-AERLEAERLEQERIAAERLEAERLEQERIAAEQAEAER 164
Cdd:pfam17380 417 QQKVEMEQIRAEQEEARQREVRRLEEERArEMERVRLEEQErQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKI 496
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 930309241 165 LEQERIAAER--LEAER----LEQERIAAEHAEAERlEQQRIAAEQAEAE-HLEQERIAAEQAEAERLEQQRI 230
Cdd:pfam17380 497 LEKELEERKQamIEEERkrklLEKEMEERQKAIYEE-ERRREAEEERRKQqEMEERRRIQEQMRKATEERSRL 568
|
|
| flhF |
PRK11889 |
flagellar biosynthesis protein FlhF; |
342-530 |
1.77e-09 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 183360 [Multi-domain] Cd Length: 436 Bit Score: 60.08 E-value: 1.77e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 342 DKKPFVILMVGVNGVGKTTTIGKLAKQFQDEGKSVMLAAGDTFRAAAVEQLQVWGERNKIPVIAQHtgaDSASVVFDAFQ 421
Cdd:PRK11889 238 EKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVR---DEAAMTRALTY 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 422 AAKARNVDVLIADTAGRlqnKDNLMQELEKIARVMKKIDPDApheVMLTIDAGTGQNAISQVNLFNQCVGLTGITLSKLD 501
Cdd:PRK11889 315 FKEEARVDYILIDTAGK---NYRASETVEEMIETMGQVEPDY---ICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFD 388
|
170 180
....*....|....*....|....*....
gi 930309241 502 GTAKGGVIFAVADKFNIPIRYIGVGEGIE 530
Cdd:PRK11889 389 ETASSGELLKIPAVSSAPIVLMTDGQDVK 417
|
|
| flhF |
PRK06731 |
flagellar biosynthesis regulator FlhF; Validated |
342-530 |
1.93e-09 |
|
flagellar biosynthesis regulator FlhF; Validated
Pssm-ID: 75717 [Multi-domain] Cd Length: 270 Bit Score: 58.60 E-value: 1.93e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 342 DKKPFVILMVGVNGVGKTTTIGKLAKQFQDEGKSVMLAAGDTFRAAAVEQLQVWGERNKIPVIAQHtgaDSASVVFDAFQ 421
Cdd:PRK06731 72 EKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVR---DEAAMTRALTY 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 422 AAKARNVDVLIADTAGRLQNKDnlmQELEKIARVMKKIDPDApheVMLTIDAGTGQNAISQVNLFNQCVGLTGITLSKLD 501
Cdd:PRK06731 149 FKEEARVDYILIDTAGKNYRAS---ETVEEMIETMGQVEPDY---ICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFD 222
|
170 180
....*....|....*....|....*....
gi 930309241 502 GTAKGGVIFAVADKFNIPIRYIGVGEGIE 530
Cdd:PRK06731 223 ETASSGELLKIPAVSSAPIVLMTDGQDVK 251
|
|
| PRK12724 |
PRK12724 |
flagellar biosynthesis regulator FlhF; Provisional |
347-529 |
4.11e-09 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183703 [Multi-domain] Cd Length: 432 Bit Score: 58.82 E-value: 4.11e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 347 VILMVGVNGVGKTTTIGKLA-KQFQDEGKSVMLAAGDTFRAAAVEQLQVWGERNKIPVIAQHTgadsasvvFDAFQAAKA 425
Cdd:PRK12724 225 VVFFVGPTGSGKTTSIAKLAaKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKD--------IKKFKETLA 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 426 RNVDVLI-ADTAGRLQNKdnlMQELEKIARVMKKIDPDAPHEVMLTIDAGTGQNAISQVNLFNQCVGLTGITLSKLDGTA 504
Cdd:PRK12724 297 RDGSELIlIDTAGYSHRN---LEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTKLDEAD 373
|
170 180
....*....|....*....|....*
gi 930309241 505 KGGVIFAVADKFNIPIRYIGVGEGI 529
Cdd:PRK12724 374 FLGSFLELADTYSKSFTYLSVGQEV 398
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
15-230 |
1.37e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 57.84 E-value: 1.37e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 15 REAERIAAEKAEAEHVEQERIAAEARDAERLAIADAELAAAEKAEQQRRDEAARLAEQQEAMLLQQEQQATEQAQREAER 94
Cdd:PTZ00121 1497 KKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDK 1576
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 95 -IAAEKAE-AEHVEQQRIaaERLEAERLEQERIAAErlEAERLEQERIAAERLEAErlEQERIAAEQAEAERLEQERIAA 172
Cdd:PTZ00121 1577 nMALRKAEeAKKAEEARI--EEVMKLYEEEKKMKAE--EAKKAEEAKIKAEELKKA--EEEKKKVEQLKKKEAEEKKKAE 1650
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 930309241 173 ERLEAErlEQERIAAEHaEAERLEQQRIAAEQAEAEHlEQERIAAEQAEAERLEQQRI 230
Cdd:PTZ00121 1651 ELKKAE--EENKIKAAE-EAKKAEEDKKKAEEAKKAE-EDEKKAAEALKKEAEEAKKA 1704
|
|
| PRK12723 |
PRK12723 |
flagellar biosynthesis regulator FlhF; Provisional |
344-529 |
1.62e-08 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183702 [Multi-domain] Cd Length: 388 Bit Score: 56.83 E-value: 1.62e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 344 KPFVILMVGVNGVGKTTTIGKLAKQF----QDEGKSVMLAAGDTFRAAAVEQLQVWGERNKIPVIAQHTGADSASVVFDa 419
Cdd:PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYginsDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ- 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 420 fqaakARNVDVLIADTAGRlQNKDNLmqELEKIARVMKKIDPDAphEVMLTIDAGTGQNAISQVNLFNQCVGLTGITLSK 499
Cdd:PRK12723 252 -----SKDFDLVLVDTIGK-SPKDFM--KLAEMKELLNACGRDA--EFHLAVSSTTKTSDVKEIFHQFSPFSYKTVIFTK 321
|
170 180 190
....*....|....*....|....*....|
gi 930309241 500 LDGTAKGGVIFAVADKFNIPIRYIGVGEGI 529
Cdd:PRK12723 322 LDETTCVGNLISLIYEMRKEVSYVTDGQIV 351
|
|
| DUF4670 |
pfam15709 |
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins ... |
91-230 |
2.36e-08 |
|
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins in this family are typically between 373 and 763 amino acids in length.
Pssm-ID: 464815 [Multi-domain] Cd Length: 522 Bit Score: 56.50 E-value: 2.36e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 91 EAERIAAEKAEAEHVEQQRIAAERLEAERLEQERIAAERLEAERLEQERIAAERLEAERLEQERIAAE------QAEAER 164
Cdd:pfam15709 367 QLERAEKMREELELEQQRRFEEIRLRKQRLEEERQRQEEEERKQRLQLQAAQERARQQQEEFRRKLQElqrkkqQEEAER 446
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 930309241 165 LEQERIAAERLEAERLEQERIAAEHAEAERLEQQRIAAEQAEAEHLEQERIAAEQAEAERLEQQRI 230
Cdd:pfam15709 447 AEAEKQRQKELEMQLAEEQKRLMEMAEEERLEYQRQKQEAEEKARLEAEERRQKEEEAARLALEEA 512
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
31-227 |
9.49e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.15 E-value: 9.49e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 31 EQERIAAEARDAE--RLAIADAELAAAEKAEQQRRDEAARLAEQ----QEAMLLQQEQQATEQAQREAER---IAAEKAE 101
Cdd:PTZ00121 1095 EAFGKAEEAKKTEtgKAEEARKAEEAKKKAEDARKAEEARKAEDarkaEEARKAEDAKRVEIARKAEDARkaeEARKAED 1174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 102 AEHVEQQRIAAERLEAERLEQERIAAERLEAERLEQERIAAerlEAERLEQERIAAEQAEAERLEQERIAAERLEAERLE 181
Cdd:PTZ00121 1175 AKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAE---EARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNN 1251
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 930309241 182 QERIAAEHAEAERLEQQRIAAEQAEAEHLEQERIAAEQAEAERLEQ 227
Cdd:PTZ00121 1252 EEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKK 1297
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
15-228 |
9.57e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.15 E-value: 9.57e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 15 REAERiaAEKAEAEHVEQERIAAEARDAER----LAIADAELAAAEKAEQQRRDEAARLA------EQQEAMLLQQEQQA 84
Cdd:PTZ00121 1564 KKAEE--AKKAEEDKNMALRKAEEAKKAEEarieEVMKLYEEEKKMKAEEAKKAEEAKIKaeelkkAEEEKKKVEQLKKK 1641
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 85 TEQAQREAERIaaEKAEaehvEQQRIAAERLEAERLEQERIAAERLEAErlEQERIAAERLEAErlEQERIAAEQAEAER 164
Cdd:PTZ00121 1642 EAEEKKKAEEL--KKAE----EENKIKAAEEAKKAEEDKKKAEEAKKAE--EDEKKAAEALKKE--AEEAKKAEELKKKE 1711
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 930309241 165 LEQERIAAERLEAErlEQERIAAEHAEAERLEQQRiAAEQAEAEHLEQERIAAEQAEAERLEQQ 228
Cdd:PTZ00121 1712 AEEKKKAEELKKAE--EENKIKAEEAKKEAEEDKK-KAEEAKKDEEEKKKIAHLKKEEEKKAEE 1772
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
92-228 |
1.27e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.56 E-value: 1.27e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 92 AERIAAEKAEAEHVEQQRIAAE----RLEAERLEQERIAAERLEAERLEQERIAAERLEAERLEQERIAAEQAEA---ER 164
Cdd:COG1196 212 AERYRELKEELKELEAELLLLKlrelEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAqaeEY 291
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 930309241 165 LEQERIAAERLEAERLEQERIAAEHAEAERLEQQRIAAEQAEAEHLEQERIAAEQAEAERLEQQ 228
Cdd:COG1196 292 ELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEE 355
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
16-228 |
1.34e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 54.76 E-value: 1.34e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 16 EAERIAAEKAEAEhvEQERIAAEARDAERLAIADAELAAAEKAEQQ-----RRDEAARLAEQQEAMLLQQEQQATEQAQR 90
Cdd:PTZ00121 1435 EAKKKAEEAKKAD--EAKKKAEEAKKAEEAKKKAEEAKKADEAKKKaeeakKADEAKKKAEEAKKKADEAKKAAEAKKKA 1512
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 91 EAERIAAEKAEAEHVEQQRIAAERLEAERLEQERIAAERLEAERL---EQERIA--AERLEAERLEQERIAAEQAEAERL 165
Cdd:PTZ00121 1513 DEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELkkaEEKKKAeeAKKAEEDKNMALRKAEEAKKAEEA 1592
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 930309241 166 EQERIAAERLEAERLEQERIAAEHAEAERLEQQRIAAEQAEAEHLEQERIAAEQAEAERLEQQ 228
Cdd:PTZ00121 1593 RIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKA 1655
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
16-229 |
1.48e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 54.76 E-value: 1.48e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 16 EAERIAAEKAEAEHV-----EQERIAAEARDAErlaIADAELAAAEKAEQQRRDEAARLAEQ----QEAMLLQQEQQATE 86
Cdd:PTZ00121 1474 EAKKKAEEAKKADEAkkkaeEAKKKADEAKKAA---EAKKKADEAKKAEEAKKADEAKKAEEakkaDEAKKAEEKKKADE 1550
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 87 QAQREAERIAAEKAEAEHV---EQQRIAAERLEAERLEQERIAAERLEAERLEQERIAAErlEAERLEQERIAAEQAEAE 163
Cdd:PTZ00121 1551 LKKAEELKKAEEKKKAEEAkkaEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAE--EAKKAEEAKIKAEELKKA 1628
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 930309241 164 rlEQERIAAERLEAERLEQERIAAEHAEAErlEQQRIAAEQaEAEHLEQERIAAEQAEAERLEQQR 229
Cdd:PTZ00121 1629 --EEEKKKVEQLKKKEAEEKKKAEELKKAE--EENKIKAAE-EAKKAEEDKKKAEEAKKAEEDEKK 1689
|
|
| flhF |
PRK14723 |
flagellar biosynthesis regulator FlhF; Provisional |
347-545 |
1.49e-07 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 237802 [Multi-domain] Cd Length: 767 Bit Score: 54.42 E-value: 1.49e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 347 VILMVGVNGVGKTTTIGKLAKQF-QDEGKS-VMLAAGDTFRAAAVEQLQVWGERNKIPVIAQHTGADsasvVFDAFQAAK 424
Cdd:PRK14723 187 VLALVGPTGVGKTTTTAKLAARCvAREGADqLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAAD----LRFALAALG 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 425 ARNVdVLIaDTAGRLQNKDNLMQELEKIARVmkkidpDAPHEVMLTIdagtgqNAISQVNLFNQCV---------GLTGI 495
Cdd:PRK14723 263 DKHL-VLI-DTVGMSQRDRNVSEQIAMLCGV------GRPVRRLLLL------NAASHGDTLNEVVhayrhgageDVDGC 328
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 930309241 496 TLSKLDGTAKGGVIFAVADKFNIPIRYIGVGEGI-EDLRAFNSNDFIDALF 545
Cdd:PRK14723 329 IITKLDEATHLGPALDTVIRHRLPVHYVSTGQKVpEHLELAQADELVDRAF 379
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
16-227 |
1.73e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 54.38 E-value: 1.73e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 16 EAERIAAEKAEAEHVEQERIAAEARDAERLAIADAELAAAEKAEQQRRDEAARLAEQ-QEAMLLQQEQQATEQAQREAER 94
Cdd:PTZ00121 1333 AAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEkKKADEAKKKAEEDKKKADELKK 1412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 95 IAAEKAEAEhvEQQRIAAERLEAERL-----------EQERIAAERLEAERLEQEriAAERLEAERLEQERIAAEQAEAE 163
Cdd:PTZ00121 1413 AAAAKKKAD--EAKKKAEEKKKADEAkkkaeeakkadEAKKKAEEAKKAEEAKKK--AEEAKKADEAKKKAEEAKKADEA 1488
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 930309241 164 RLEQERIAAERLEAERLEQERIAAEHA----EAERLEQQRIAAEQAEAEHL---EQERIAAEQAEAERLEQ 227
Cdd:PTZ00121 1489 KKKAEEAKKKADEAKKAAEAKKKADEAkkaeEAKKADEAKKAEEAKKADEAkkaEEKKKADELKKAEELKK 1559
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
26-229 |
3.32e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.40 E-value: 3.32e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 26 EAEHVEQERIAAEARDAERLAIADAELAAAEKAEQQRRDEAARLAEQQEAMLLQQEQQATEQAQREAERIAAEKAEAEHV 105
Cdd:COG1196 533 EAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREAD 612
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 106 EQQRIAAERLEAERLEQERIAAERLEAERLEQERIAAERLEAERLEQERIAAEQAEAERLEQERiaAERLEAERLEQERI 185
Cdd:COG1196 613 ARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLE--AEAELEELAERLAE 690
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 930309241 186 AAEHAEAERLEQQRIAAEQAEAEHLEQERIAAEQAEAERLEQQR 229
Cdd:COG1196 691 EELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAER 734
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
64-228 |
6.12e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.84 E-value: 6.12e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 64 DEAARLAEqqEAMLLQQEQQATEQAQREAERIAAEKAEAEHVEQQRIAAERLEAERLEQERIAAERLEAERLEQERIAAE 143
Cdd:PTZ00121 1094 EEAFGKAE--EAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARK 1171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 144 RLEAERLEQERIAAEQAEAERLEQERIAAERLEAERLEQERIAaehAEAERLEQQRIAAEQAEAEHLEQERIAAEQAEAE 223
Cdd:PTZ00121 1172 AEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKA---EEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEE 1248
|
....*
gi 930309241 224 RLEQQ 228
Cdd:PTZ00121 1249 RNNEE 1253
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
15-258 |
9.54e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.07 E-value: 9.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 15 REAERIAAEKAEAEHVEQERIAAEARDAE--RLAIADAELAAAEKAEQQRRDEAARLAEQQEAMllqqeqqateqaqrEA 92
Cdd:PTZ00121 1115 RKAEEAKKKAEDARKAEEARKAEDARKAEeaRKAEDAKRVEIARKAEDARKAEEARKAEDAKKA--------------EA 1180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 93 ERIAAEKAEAEHVEQQRIAAERLEAERLEQERIAAErleAERLEQERIAAERLEAERLEQERIAAEQAEAERLEQERIAA 172
Cdd:PTZ00121 1181 ARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEE---ARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKF 1257
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 173 ERLEAERLEQERIAAEHAEAERLEQQRIAAEQAEAEHLeqeRIAAEQAEAERLEQQriaAEEAKAAEKPKKEGFFARLKK 252
Cdd:PTZ00121 1258 EEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEA---KKAEEKKKADEAKKK---AEEAKKADEAKKKAEEAKKKA 1331
|
....*.
gi 930309241 253 GLLKTR 258
Cdd:PTZ00121 1332 DAAKKK 1337
|
|
| YqiK |
COG2268 |
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown]; |
98-228 |
1.21e-06 |
|
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown];
Pssm-ID: 441869 [Multi-domain] Cd Length: 439 Bit Score: 51.03 E-value: 1.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 98 EKAEAEHVEQQRIA-AERLEAE-RLEQERIAAERLEAErleQERIAAERLEAERLEQE--RIAAEQA-EAERLEQERIAA 172
Cdd:COG2268 204 AEAEAERETEIAIAqANREAEEaELEQEREIETARIAE---AEAELAKKKAEERREAEtaRAEAEAAyEIAEANAEREVQ 280
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 930309241 173 ERLEAERLEQErIAAEHAEAERLEQQRIAAEQAEAEHLEQERIAAEQAEAERLEQQ 228
Cdd:COG2268 281 RQLEIAERERE-IELQEKEAEREEAELEADVRKPAEAEKQAAEAEAEAEAEAIRAK 335
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
65-228 |
1.25e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.45 E-value: 1.25e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 65 EAARLAEQQEAML--LQQEQQATEQAQREAERIAAEKAEAEHVEQQRiaAERLEAERLEQERIAAERLEAERLE-QERIA 141
Cdd:COG4913 242 EALEDAREQIELLepIRELAERYAAARERLAELEYLRAALRLWFAQR--RLELLEAELEELRAELARLEAELERlEARLD 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 142 AERLEAERLEQERIAAEQAEAERLEQErIAAERLEAERLEQER-----------IAAEHAEAERLEQQRIAAEQAEAEHL 210
Cdd:COG4913 320 ALREELDELEAQIRGNGGDRLEQLERE-IERLERELEERERRRarleallaalgLPLPASAEEFAALRAEAAALLEALEE 398
|
170
....*....|....*...
gi 930309241 211 EQERIAAEQAEAERLEQQ 228
Cdd:COG4913 399 ELEALEEALAEAEAALRD 416
|
|
| YqiK |
COG2268 |
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown]; |
62-226 |
2.00e-06 |
|
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown];
Pssm-ID: 441869 [Multi-domain] Cd Length: 439 Bit Score: 50.26 E-value: 2.00e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 62 RRDEAARLAEQQEAMLLQQEQQATEQAQREAErIAAEKAEAEhVEQQRIAaerlEAERLEQERIAAERLEAERLEQERIA 141
Cdd:COG2268 193 KIAEIIRDARIAEAEAERETEIAIAQANREAE-EAELEQERE-IETARIA----EAEAELAKKKAEERREAETARAEAEA 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 142 AERLEAERLEQErIAAEQAEAERLEQERIAAERLEAERLEQERIAAEHAEAERleQQRIAAEQAEAEHLEQERIAaeQAE 221
Cdd:COG2268 267 AYEIAEANAERE-VQRQLEIAEREREIELQEKEAEREEAELEADVRKPAEAEK--QAAEAEAEAEAEAIRAKGLA--EAE 341
|
....*
gi 930309241 222 AERLE 226
Cdd:COG2268 342 GKRAL 346
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
19-228 |
2.74e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.44 E-value: 2.74e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 19 RIAAEKAEAEHVEQERIAAEARDAERLAIADAELAAAEKAEQQRRDEAARLAEQQEAMLLQQEQQATEQAQREAERIAAE 98
Cdd:TIGR02168 727 QISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALD 806
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 99 KAEAEHVEQQRIAAERLEAERLEQERIAAERLEAERLEQeRIAAERLEAERLE------QERIAAEQAEAERLEQERIAA 172
Cdd:TIGR02168 807 ELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEE-QIEELSEDIESLAaeieelEELIEELESELEALLNERASL 885
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 930309241 173 ERLEAERLEQERIAAEHAEAERLEQQRIAAEQAEA-EHLEQERIAAEQAEAERLEQQ 228
Cdd:TIGR02168 886 EEALALLRSELEELSEELRELESKRSELRRELEELrEKLAQLELRLEGLEVRIDNLQ 942
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
16-230 |
3.62e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.14 E-value: 3.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 16 EAERIAAEKAEAEhvEQERIAAEARDAERLAIADAElaaaekaeQQRRDEAARLAEQQEAMLLQQEQQATEQAQREAERI 95
Cdd:PTZ00121 1409 ELKKAAAAKKKAD--EAKKKAEEKKKADEAKKKAEE--------AKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKK 1478
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 96 AAEKAEAEHVEQQriaAERLEAERLEQERIAAERLEAERLEQERIAAERLEAERLEQERIAAE--QAEAERLEQERIAAE 173
Cdd:PTZ00121 1479 AEEAKKADEAKKK---AEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEakKAEEKKKADELKKAE 1555
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 174 RL----EAERLEQERIAAEH--------AEAERLEQQRIA-------------AEQAEAEhlEQERIAAEQAEAERLEQQ 228
Cdd:PTZ00121 1556 ELkkaeEKKKAEEAKKAEEDknmalrkaEEAKKAEEARIEevmklyeeekkmkAEEAKKA--EEAKIKAEELKKAEEEKK 1633
|
..
gi 930309241 229 RI 230
Cdd:PTZ00121 1634 KV 1635
|
|
| Casc1_N |
pfam15927 |
Cancer susceptibility candidate 1 N-terminus; This presumed domain is functionally ... |
116-183 |
3.92e-06 |
|
Cancer susceptibility candidate 1 N-terminus; This presumed domain is functionally uncharacterized. This domain family is found in eukaryotes, and is approximately 200 amino acids in length. The family is found in association with pfam12366. There are two completely conserved residues (N and W) that may be functionally important.
Pssm-ID: 464947 [Multi-domain] Cd Length: 201 Bit Score: 47.74 E-value: 3.92e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 930309241 116 EAERLEQERIAAERLEAERLEQERIAAERLEAERLEQERIAAEQAEAER-LEQERIAAERLEAERLEQE 183
Cdd:pfam15927 2 RLREEEEERLRAEEEEAERLEEERREEEEEERLAAEQDRRAEELEELKHlLEERKEALEKLRAEAREEA 70
|
|
| PRK05035 |
PRK05035 |
electron transport complex protein RnfC; Provisional |
90-223 |
4.52e-06 |
|
electron transport complex protein RnfC; Provisional
Pssm-ID: 235334 [Multi-domain] Cd Length: 695 Bit Score: 49.56 E-value: 4.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 90 REAERIAAEKAEAEHVE-QQRIaaERLEAERLEQERIAAERLEAERLEQERIAAERLEAERLEQERIAAEQAEAERLEQE 168
Cdd:PRK05035 441 IEQEKKKAEEAKARFEArQARL--EREKAAREARHKKAAEARAAKDKDAVAAALARVKAKKAAATQPIVIKAGARPDNSA 518
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 930309241 169 RIAAERLEAERLEQERIAAEHAEAERLEQQRIAA--EQAEAEHLEQERIAAEQAEAE 223
Cdd:PRK05035 519 VIAAREARKAQARARQAEKQAAAAADPKKAAVAAaiARAKAKKAAQQAANAEAEEEV 575
|
|
| flhF |
PRK14721 |
flagellar biosynthesis regulator FlhF; Provisional |
347-552 |
5.28e-06 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173184 [Multi-domain] Cd Length: 420 Bit Score: 48.79 E-value: 5.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 347 VILMVGVNGVGKTTTIGKLAKQ--FQDEGKSVMLAAGDTFRAAAVEQLQVWGernKIPVIAQHTGADSASVVFdAFQAAK 424
Cdd:PRK14721 193 VYALIGPTGVGKTTTTAKLAARavIRHGADKVALLTTDSYRIGGHEQLRIYG---KLLGVSVRSIKDIADLQL-MLHELR 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 425 ARNVdVLIaDTAGRLQNKDNLMQELEKIARVMKKIdpdaphEVMLTIDAGTGQNAISQVNLFNQCVGLTGITLSKLDGTA 504
Cdd:PRK14721 269 GKHM-VLI-DTVGMSQRDQMLAEQIAMLSQCGTQV------KHLLLLNATSSGDTLDEVISAYQGHGIHGCIITKVDEAA 340
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 930309241 505 KGGVIFAVADKFNIPIRYIGVGEGI-EDLRAFNSNDFIDALFSQDEDNA 552
Cdd:PRK14721 341 SLGIALDAVIRRKLVLHYVTNGQKVpEDLHEANSRYLLHRIFKPSRENS 389
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
15-229 |
6.46e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 49.37 E-value: 6.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 15 REAERiAAEKAEAEHVEQERIAAEARDAE--RLAIADAELAAAEKAEQQRRDEAARLAEqqEAMLLQQEQQATEQAQREA 92
Cdd:PTZ00121 1146 RKAED-AKRVEIARKAEDARKAEEARKAEdaKKAEAARKAEEVRKAEELRKAEDARKAE--AARKAEEERKAEEARKAED 1222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 93 ERIAAEKAEAEHVEQQRIAAERLEAERLEQERIAAERLEAERLEQERIAAERLEAERLEQERIAAEQAEAERLE--QERI 170
Cdd:PTZ00121 1223 AKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKkaEEKK 1302
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 930309241 171 AAERL-----EAERLEQERIAAEHAEAERLEQQRIAAEQAEAEHLEQERIAAEQAEAERLEQQR 229
Cdd:PTZ00121 1303 KADEAkkkaeEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKA 1366
|
|
| Casc1_N |
pfam15927 |
Cancer susceptibility candidate 1 N-terminus; This presumed domain is functionally ... |
160-227 |
6.49e-06 |
|
Cancer susceptibility candidate 1 N-terminus; This presumed domain is functionally uncharacterized. This domain family is found in eukaryotes, and is approximately 200 amino acids in length. The family is found in association with pfam12366. There are two completely conserved residues (N and W) that may be functionally important.
Pssm-ID: 464947 [Multi-domain] Cd Length: 201 Bit Score: 46.97 E-value: 6.49e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 930309241 160 AEAERLEQERIAAERLEAERLEQERIAAEHAEAERLEQQRIAAEQAEAEH-LEQERIAAEQAEAERLEQ 227
Cdd:pfam15927 1 ARLREEEEERLRAEEEEAERLEEERREEEEEERLAAEQDRRAEELEELKHlLEERKEALEKLRAEAREE 69
|
|
| PRK05035 |
PRK05035 |
electron transport complex protein RnfC; Provisional |
20-228 |
8.86e-06 |
|
electron transport complex protein RnfC; Provisional
Pssm-ID: 235334 [Multi-domain] Cd Length: 695 Bit Score: 48.41 E-value: 8.86e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 20 IAAEKAEAEHVEQERIAAEARDAeRLaiadaelaaaekaeqqRRDEAARLAEQQEAmllqqeqqateqaqreAERIAAEK 99
Cdd:PRK05035 438 IRAIEQEKKKAEEAKARFEARQA-RL----------------EREKAAREARHKKA----------------AEARAAKD 484
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 100 AEAehveqQRIAAERLEAERLEQERIAAERLEAERLEQERIAAERLEAERLEQERIAAEQAEAERLEQERIAA--ERLEA 177
Cdd:PRK05035 485 KDA-----VAAALARVKAKKAAATQPIVIKAGARPDNSAVIAAREARKAQARARQAEKQAAAAADPKKAAVAAaiARAKA 559
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 930309241 178 ERLEQERIAAEHAEAERLEQQRIAAEQAEAehleQERIAAEQAEAERLEQQ 228
Cdd:PRK05035 560 KKAAQQAANAEAEEEVDPKKAAVAAAIARA----KAKKAAQQAASAEPEEQ 606
|
|
| DUF4670 |
pfam15709 |
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins ... |
16-220 |
8.89e-06 |
|
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins in this family are typically between 373 and 763 amino acids in length.
Pssm-ID: 464815 [Multi-domain] Cd Length: 522 Bit Score: 48.41 E-value: 8.89e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 16 EAERIAAEKAEAEHVEQERIAAEARDAERlaiadaELAAAEKAEQQRRDEAARLAEQQeamllqqeqqateqaqREAERI 95
Cdd:pfam15709 344 EMRRLEVERKRREQEEQRRLQQEQLERAE------KMREELELEQQRRFEEIRLRKQR----------------LEEERQ 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 96 AAEKAEAEHVEQQRIAAERleaERLEQERIAAERLEAERLEQERiAAERLEAERLEQERIAAEQAEAERLEQERIAAERL 175
Cdd:pfam15709 402 RQEEEERKQRLQLQAAQER---ARQQQEEFRRKLQELQRKKQQE-EAERAEAEKQRQKELEMQLAEEQKRLMEMAEEERL 477
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 930309241 176 EAERLEQEriAAEHAEAERLEQQRIAAEQAEAEHLEQERIAAEQA 220
Cdd:pfam15709 478 EYQRQKQE--AEEKARLEAEERRQKEEEAARLALEEAMKQAQEQA 520
|
|
| DUF4670 |
pfam15709 |
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins ... |
18-214 |
1.07e-05 |
|
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins in this family are typically between 373 and 763 amino acids in length.
Pssm-ID: 464815 [Multi-domain] Cd Length: 522 Bit Score: 48.02 E-value: 1.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 18 ERIAAEKAEAEHVEQERIAAEARDAERLAIADAELAAAEKAE----QQRRDEAARLAEQQeamllqqeqqateqaqREAE 93
Cdd:pfam15709 336 DRLRAERAEMRRLEVERKRREQEEQRRLQQEQLERAEKMREEleleQQRRFEEIRLRKQR----------------LEEE 399
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 94 RIAAEKAEAEHVEQQRIAAERleaERLEQERIAAERLEAERLEQERiAAERLEAERLEQERIAAEQAEAERLEQERIAAE 173
Cdd:pfam15709 400 RQRQEEEERKQRLQLQAAQER---ARQQQEEFRRKLQELQRKKQQE-EAERAEAEKQRQKELEMQLAEEQKRLMEMAEEE 475
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 930309241 174 RLEAERLEQE-----RIAAEHAEAERLEQQRIAAEQAEAEHLEQER 214
Cdd:pfam15709 476 RLEYQRQKQEaeekaRLEAEERRQKEEEAARLALEEAMKQAQEQAR 521
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
70-230 |
1.12e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.37 E-value: 1.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 70 AEQQEAMLLQQEQQATEQAQREAERIAAEKAEAEHVEQQRIAAERLEAERLEQERIAAERLEAERLEQERiaaERLEAER 149
Cdd:COG4913 608 NRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAEL---ERLDASS 684
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 150 LE----QERIAAEQAEAERLEQERIAAERlEAERLEQERIAAE---HAEAERLEQQRIAAEQAEAEHLEQERIAAEQAEA 222
Cdd:COG4913 685 DDlaalEEQLEELEAELEELEEELDELKG-EIGRLEKELEQAEeelDELQDRLEAAEDLARLELRALLEERFAAALGDAV 763
|
....*...
gi 930309241 223 ERLEQQRI 230
Cdd:COG4913 764 ERELRENL 771
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
93-227 |
1.29e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.13 E-value: 1.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 93 ERIAAEKAEAEHVEQQRIAAERlEAERLEQERIAAERLEAERLEQERIAAERLEAERLEQERIAAEQAEAERLEQERIAA 172
Cdd:TIGR02168 684 EKIEELEEKIAELEKALAELRK-ELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAE 762
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 930309241 173 ERLEAERLEQERIAAEHAEAERLEQQRIAAEQAEAEHLEQERIAAEQAEAERLEQ 227
Cdd:TIGR02168 763 IEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNE 817
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
17-213 |
1.32e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.37 E-value: 1.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 17 AERIAAEKAEAEHVEQERIAAEARdaerlaiaDAELAAAEKAEQQRRDEAARLAEQQEAML-LQQEQQATEQAQREAERI 95
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEER--------LEALEAELDALQERREALQRLAEYSWDEIdVASAEREIAELEAELERL 680
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 96 AAEKAEAEHVEQQRIAAERlEAERLEQERIAAERlEAERLEQERIAAErleaERLEQERIAAEQAEAERLEQERIAAErl 175
Cdd:COG4913 681 DASSDDLAALEEQLEELEA-ELEELEEELDELKG-EIGRLEKELEQAE----EELDELQDRLEAAEDLARLELRALLE-- 752
|
170 180 190
....*....|....*....|....*....|....*...
gi 930309241 176 eaERLEQERIAAEHAEAERLEQQRIAAEQAEAEHLEQE 213
Cdd:COG4913 753 --ERFAAALGDAVERELRENLEERIDALRARLNRAEEE 788
|
|
| Casc1_N |
pfam15927 |
Cancer susceptibility candidate 1 N-terminus; This presumed domain is functionally ... |
146-213 |
1.41e-05 |
|
Cancer susceptibility candidate 1 N-terminus; This presumed domain is functionally uncharacterized. This domain family is found in eukaryotes, and is approximately 200 amino acids in length. The family is found in association with pfam12366. There are two completely conserved residues (N and W) that may be functionally important.
Pssm-ID: 464947 [Multi-domain] Cd Length: 201 Bit Score: 46.20 E-value: 1.41e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 930309241 146 EAERLEQERIAAEQAEAERLEQERIAAERLEAERLEQERIAAEHAEAER-LEQQRIAAEQAEAEHLEQE 213
Cdd:pfam15927 2 RLREEEEERLRAEEEEAERLEEERREEEEEERLAAEQDRRAEELEELKHlLEERKEALEKLRAEAREEA 70
|
|
| hsdR |
PRK11448 |
type I restriction enzyme EcoKI subunit R; Provisional |
137-226 |
1.44e-05 |
|
type I restriction enzyme EcoKI subunit R; Provisional
Pssm-ID: 236912 [Multi-domain] Cd Length: 1123 Bit Score: 48.02 E-value: 1.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 137 QERIAAERLEAERLEQERiAAEQAEAERLEQERIAAERLEAERleQERIAAEHAEAERLEQQriaAEQAEAEHLEQERIA 216
Cdd:PRK11448 148 QQEVLTLKQQLELQAREK-AQSQALAEAQQQELVALEGLAAEL--EEKQQELEAQLEQLQEK---AAETSQERKQKRKEI 221
|
90
....*....|
gi 930309241 217 AEQAeAERLE 226
Cdd:PRK11448 222 TDQA-AKRLE 230
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
24-228 |
1.51e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.13 E-value: 1.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 24 KAEAEHVEQERIAAEARDAERLAIADAELAAAEKAEQQRRDEAARLAEQQE--AMLLQQEQQATEQAQREAERIAAEKAE 101
Cdd:TIGR02168 294 ANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEklEELKEELESLEAELEELEAELEELESR 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 102 AEHVEQQRIAAERLEAERLEQERIAAERLEAERLEQERIaAERLEAERLEQERIAAEQAEAERLEQERIAAERLEAERLE 181
Cdd:TIGR02168 374 LEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERL-EDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEEL 452
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 930309241 182 QERIAAEHAEAERLEQQRIAAEQAEAEHLEQE-RIAAEQAEAERLEQQ 228
Cdd:TIGR02168 453 QEELERLEEALEELREELEEAEQALDAAERELaQLQARLDSLERLQEN 500
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
16-224 |
1.70e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.83 E-value: 1.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 16 EAERIAAEKAEAEHVEQERIAAEARDAErlaiadaelaaaekaEQQRRDEAARLAEQQEAMLLQQEQQATEQAQREAERi 95
Cdd:PTZ00121 1616 EEAKIKAEELKKAEEEKKKVEQLKKKEA---------------EEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEE- 1679
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 96 aAEKAEaehvEQQRIAAERLEAErlEQERIAAERLEAERLEQERIAAERLEAErlEQERIAAEQAEAERlEQERIAAERL 175
Cdd:PTZ00121 1680 -AKKAE----EDEKKAAEALKKE--AEEAKKAEELKKKEAEEKKKAEELKKAE--EENKIKAEEAKKEA-EEDKKKAEEA 1749
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 930309241 176 EAERLEQERIAAEHAEAERLEQQRIAAEQAEAEHLEQERIAAEQAEAER 224
Cdd:PTZ00121 1750 KKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDK 1798
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
15-225 |
1.70e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 47.66 E-value: 1.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 15 REAERIAAEKAEAEHVEQERIAAEARDAERLAIADAELAAAEKAEQQRRDeaarLAEQQEAMLLQQEQQATEQAQREAER 94
Cdd:TIGR00618 290 RKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSS----IEEQRRLLQTLHSQEIHIRDAHEVAT 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 95 IAAEKAEAEHVEQQRIAAERLEAERLEQ-ERIAAERLEAERLEQERIAAERLEAERLEQERIAAE---QAEAERLEQERI 170
Cdd:TIGR00618 366 SIREISCQQHTLTQHIHTLQQQKTTLTQkLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKkqqELQQRYAELCAA 445
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 171 AAER-----LEAERLEQERIAAEHAEAERLEQQRIAAEQAEAEHLEQERIAAEQAEAERL 225
Cdd:TIGR00618 446 AITCtaqceKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCP 505
|
|
| YqiK |
COG2268 |
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown]; |
99-228 |
2.03e-05 |
|
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown];
Pssm-ID: 441869 [Multi-domain] Cd Length: 439 Bit Score: 47.17 E-value: 2.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 99 KAEAEHVEQQRIAaeRLEAERLEQERIA-AERLEAE-RLEQERIAAERL--EAERLEQERIAAEQAEAERLEQERIAAER 174
Cdd:COG2268 192 RKIAEIIRDARIA--EAEAERETEIAIAqANREAEEaELEQEREIETARiaEAEAELAKKKAEERREAETARAEAEAAYE 269
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 930309241 175 LEAERLEQErIAAEHAEAERLEQQRIAAEQAEAEHLEQERIAAEQAEAERLEQQ 228
Cdd:COG2268 270 IAEANAERE-VQRQLEIAEREREIELQEKEAEREEAELEADVRKPAEAEKQAAE 322
|
|
| PRK00247 |
PRK00247 |
putative inner membrane protein translocase component YidC; Validated |
101-227 |
2.55e-05 |
|
putative inner membrane protein translocase component YidC; Validated
Pssm-ID: 178945 [Multi-domain] Cd Length: 429 Bit Score: 46.77 E-value: 2.55e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 101 EAEHVEQQRIAAERLEAERLEQERIAAERLeAERLEQERIAAERLEAERLEQERiaAEQAEAERLEQERIAAERLEAER- 179
Cdd:PRK00247 284 KEHHAEQRAQYREKQKEKKAFLWTLRRNRL-RMIITPWRAPELHAENAEIKKTR--TAEKNEAKARKKEIAQKRRAAERe 360
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 930309241 180 LEQERIAAEHAEAERLEQQRIAAEQA-----EAEHLEQERIAAEQAEAERLEQ 227
Cdd:PRK00247 361 INREARQERAAAMARARARRAAVKAKkkgliDASPNEDTPSENEESKGSPPQV 413
|
|
| tolA_full |
TIGR02794 |
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the ... |
16-224 |
3.08e-05 |
|
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB. [Transport and binding proteins, Other, Cellular processes, Pathogenesis]
Pssm-ID: 274303 [Multi-domain] Cd Length: 346 Bit Score: 46.38 E-value: 3.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 16 EAERIAAEKAEAEHVEQERIAAEARDAERLAIADAELAAAEKAEQQR--RDEAARLAEQQ-EAMLLQQEQQATEQAQREA 92
Cdd:TIGR02794 51 QANRIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRaaAEKAAKQAEQAaKQAEEKQKQAEEAKAKQAA 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 93 ERIAAEKAEAEHVEQQRIAAERLEAERLEQERIAAERLEAERLEQERIAAERLEAERLEQERIAAEQAEAERLEQERIAA 172
Cdd:TIGR02794 131 EAKAKAEAEAERKAKEEAAKQAEEEAKAKAAAEAKKKAEEAKKKAEAEAKAKAEAEAKAKAEEAKAKAEAAKAKAAAEAA 210
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 930309241 173 ERLEAERLEQERIAAE-HAEAERLEQQRIAAEQAEAEHLEQERIAAEQAEAER 224
Cdd:TIGR02794 211 AKAEAEAAAAAAAEAErKADEAELGDIFGLASGSNAEKQGGARGAAAGSEVDK 263
|
|
| TPH |
pfam13868 |
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of ... |
15-230 |
3.16e-05 |
|
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of eukaryotic proteins. Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). The family is in the trichohyalin-plectin-homology domain.
Pssm-ID: 464007 [Multi-domain] Cd Length: 341 Bit Score: 46.07 E-value: 3.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 15 REAERIAAEKAEAEHVEQERIAAEARDAERLAIADAELAAAEKAEQQRRDEAARLAEQQEAMLLQQEQQATEQAQREAER 94
Cdd:pfam13868 96 KLQEREQMDEIVERIQEEDQAEAEEKLEKQRQLREEIDEFNEEQAEWKELEKEEEREEDERILEYLKEKAEREEEREAER 175
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 95 IAAEKAEAEHVEQQRIAAERLEAERLEQERIAAERLEAERLEQERIAAERLEAERLEQERIAAEQAEAERLEQERIAAER 174
Cdd:pfam13868 176 EEIEEEKEREIARLRAQQEKAQDEKAERDELRAKLYQEEQERKERQKEREEAEKKARQRQELQQAREEQIELKERRLAEE 255
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 930309241 175 LEAERLEQERIAAEHAEAERLEQQRIAAEQAEAEHL---------EQERIAAEQAEAERLEQQRI 230
Cdd:pfam13868 256 AEREEEEFERMLRKQAEDEEIEQEEAEKRRMKRLEHrrelekqieEREEQRAAEREEELEEGERL 320
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
126-324 |
3.83e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.83 E-value: 3.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 126 AAERLEAERLEQERIAAERLEAerleQERIAAEQAEAERLEQERIAAERLEAERLEQERIAAEHAEAERLEQQRIAAEQA 205
Cdd:COG4913 608 NRAKLAALEAELAELEEELAEA----EERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAELERLDAS 683
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 206 EAEHLE-QERIAAEQAEAERLEQQRIAAEEAKAAEKPKKEGFFARLKKglLKTRVNIgsgfasifTGKKIDDELFEDLET 284
Cdd:COG4913 684 SDDLAAlEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDE--LQDRLEA--------AEDLARLELRALLEE 753
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 930309241 285 QLLTADLG--VDTTMKLIDSLTDAANRKQLKDGDALYELMKQ 324
Cdd:COG4913 754 RFAAALGDavERELRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| MAP7 |
pfam05672 |
MAP7 (E-MAP-115) family; The organization of microtubules varies with the cell type and is ... |
116-230 |
4.02e-05 |
|
MAP7 (E-MAP-115) family; The organization of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115-kDa epithelial MAP (E-MAP-115/MAP7) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin. The binding of this microtubule associated protein is nucleotide independent.
Pssm-ID: 461709 [Multi-domain] Cd Length: 153 Bit Score: 43.88 E-value: 4.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 116 EAERLEQERIAAERLEAERLEQERIAAERLEAERLEQERIAAEQAEAERLEQERIAAERLEAERLEQERIAAEHAEaERL 195
Cdd:pfam05672 11 EAARILAEKRRQAREQREREEQERLEKEEEERLRKEELRRRAEEERARREEEARRLEEERRREEEERQRKAEEEAE-ERE 89
|
90 100 110
....*....|....*....|....*....|....*
gi 930309241 196 EQQRIAAEQAEAEHLEQERIAAEQAEAERLEQQRI 230
Cdd:pfam05672 90 QREQEEQERLQKQKEEAEAKAREEAERQRQEREKI 124
|
|
| YqiK |
COG2268 |
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown]; |
24-207 |
5.72e-05 |
|
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown];
Pssm-ID: 441869 [Multi-domain] Cd Length: 439 Bit Score: 45.63 E-value: 5.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 24 KAEAEHVEQERIA-AEARDAERLAIADAELAAAEKAEQQRRDEAARLAEQQEAMLlqQEQQATEQAQREAERIAAEKA-- 100
Cdd:COG2268 192 RKIAEIIRDARIAeAEAERETEIAIAQANREAEEAELEQEREIETARIAEAEAEL--AKKKAEERREAETARAEAEAAye 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 101 EAEHVEQQRIAAERLEAERLEQERIAAERLEAERLEQERIAAERLEAERLEQERIAAEQAEAERLEQERIA-AERLEAER 179
Cdd:COG2268 270 IAEANAEREVQRQLEIAEREREIELQEKEAEREEAELEADVRKPAEAEKQAAEAEAEAEAEAIRAKGLAEAeGKRALAEA 349
|
170 180
....*....|....*....|....*....
gi 930309241 180 LEQERIAA-EHAEAERLEQqrIAAEQAEA 207
Cdd:COG2268 350 WNKLGDAAiLLMLIEKLPE--IAEAAAKP 376
|
|
| TPH |
pfam13868 |
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of ... |
15-228 |
8.71e-05 |
|
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of eukaryotic proteins. Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). The family is in the trichohyalin-plectin-homology domain.
Pssm-ID: 464007 [Multi-domain] Cd Length: 341 Bit Score: 44.91 E-value: 8.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 15 REAERIAAEKAEAEHVEQERIAAEARDAERLAIADAELAAAEKAEQQRRDEAARLAEQQEAMLLQQEQQATEQAQREAER 94
Cdd:pfam13868 68 KEERKRYRQELEEQIEEREQKRQEEYEEKLQEREQMDEIVERIQEEDQAEAEEKLEKQRQLREEIDEFNEEQAEWKELEK 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 95 IAAEKAE---AEHVEQQRIAAERLEAERLEQERIAAERLEAERLEQERIaaerlEAERLEQERIAAEQAEAERLEQERIA 171
Cdd:pfam13868 148 EEEREEDeriLEYLKEKAEREEEREAEREEIEEEKEREIARLRAQQEKA-----QDEKAERDELRAKLYQEEQERKERQK 222
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 930309241 172 AERLEAERLEQERIAAEHAEAERLEQQRIAAEQAEAEHLEQERIAAEQAEAERLEQQ 228
Cdd:pfam13868 223 EREEAEKKARQRQELQQAREEQIELKERRLAEEAEREEEEFERMLRKQAEDEEIEQE 279
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
17-229 |
1.11e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.29 E-value: 1.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 17 AERIAAEKAEAEHVEQERIAAEARDAERlaiadaELAAAEKAEQQRRDEAARLAEQQEAmllqqeqqateqaqreaeria 96
Cdd:COG4913 261 AERYAAARERLAELEYLRAALRLWFAQR------RLELLEAELEELRAELARLEAELER--------------------- 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 97 aekAEAEHvEQQRIAAERLEAERLEQERIAAERLEAErLEQERIAAERLEAERLEQERIAAEQAEAERLEQERIAAERLE 176
Cdd:COG4913 314 ---LEARL-DALREELDELEAQIRGNGGDRLEQLERE-IERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAE 388
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 930309241 177 AerleQERIAAEHAEAERLEQQRIAAEQAEAEHleQERIAAEQAEAERLEQQR 229
Cdd:COG4913 389 A----AALLEALEEELEALEEALAEAEAALRDL--RRELRELEAEIASLERRK 435
|
|
| PRK00247 |
PRK00247 |
putative inner membrane protein translocase component YidC; Validated |
102-224 |
1.36e-04 |
|
putative inner membrane protein translocase component YidC; Validated
Pssm-ID: 178945 [Multi-domain] Cd Length: 429 Bit Score: 44.46 E-value: 1.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 102 AEHVEQQRIAAERLEAER-------LEQERIAAERLEAERLEQER---IAAERLEAERLEQERIAAE-QAEAERLEQERI 170
Cdd:PRK00247 292 AQYREKQKEKKAFLWTLRrnrlrmiITPWRAPELHAENAEIKKTRtaeKNEAKARKKEIAQKRRAAErEINREARQERAA 371
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 930309241 171 AAERLEAERleQERIAAEHAEAERLEQQR--IAAEQAEAEHLEQERIAAEQAEAER 224
Cdd:PRK00247 372 AMARARARR--AAVKAKKKGLIDASPNEDtpSENEESKGSPPQVEATTTAEPNREP 425
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
3-177 |
1.43e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.93 E-value: 1.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 3 LQQEQQATEQAQREAERIAAEKAEAEHVEQERIAAEARDAERLAIADAELAAAEKAEQQRRDEAARLAEQQEAMLLQQEQ 82
Cdd:COG1196 607 DLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAE 686
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 83 QATEQAQREAERIAAEKAEAEHVEQQRIAAERLEAE---RLEQERIAAERLEAERLEQERIAAERLEAERLEQERIAAEQ 159
Cdd:COG1196 687 RLAEEELELEEALLAEEEEERELAEAEEERLEEELEeeaLEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELE 766
|
170
....*....|....*...
gi 930309241 160 AEAERLEQERiaaERLEA 177
Cdd:COG1196 767 RELERLEREI---EALGP 781
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
91-179 |
1.44e-04 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 44.82 E-value: 1.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 91 EAERIAAEKaEAEHVEQQRIAAERLEAERLEQERIAAERLEAERLEQERIAAERLEAERLEQERIAAEQAEAERLEQERI 170
Cdd:PRK00409 526 EELERELEQ-KAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQLQKGGYASV 604
|
....*....
gi 930309241 171 AAERLEAER 179
Cdd:PRK00409 605 KAHELIEAR 613
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
15-228 |
1.52e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 44.75 E-value: 1.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 15 REAERIAAEKAEAEHV---EQERIAAEARDAErlaIADAELAAAEKAEQQRR-DEAARLAEQQEamllqqeqqateQAQR 90
Cdd:PTZ00121 1268 RQAAIKAEEARKADELkkaEEKKKADEAKKAE---EKKKADEAKKKAEEAKKaDEAKKKAEEAK------------KKAD 1332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 91 EAERIAAEKAEAEHVEQQRIAAERLEAERLEQERIAAE-RLEAERLEQERIAAERLEAERLEQERIAAEQAEAERLEQER 169
Cdd:PTZ00121 1333 AAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEkKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKK 1412
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 930309241 170 IAAERLEAERLEQEriAAEHAEAERLEQQriAAEQAEAEHLEQEriAAEQAEAERLEQQ 228
Cdd:PTZ00121 1413 AAAAKKKADEAKKK--AEEKKKADEAKKK--AEEAKKADEAKKK--AEEAKKAEEAKKK 1465
|
|
| hsdR |
PRK11448 |
type I restriction enzyme EcoKI subunit R; Provisional |
122-209 |
1.54e-04 |
|
type I restriction enzyme EcoKI subunit R; Provisional
Pssm-ID: 236912 [Multi-domain] Cd Length: 1123 Bit Score: 44.56 E-value: 1.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 122 QERIAAERLEAERLEQERIAAERLeAERLEQERIAAEQAEAErLEQERIAAErleaERLEQERIAAEHAEAERLEQQRIA 201
Cdd:PRK11448 148 QQEVLTLKQQLELQAREKAQSQAL-AEAQQQELVALEGLAAE-LEEKQQELE----AQLEQLQEKAAETSQERKQKRKEI 221
|
....*...
gi 930309241 202 AEQAEAEH 209
Cdd:PRK11448 222 TDQAAKRL 229
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
86-229 |
1.55e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 44.75 E-value: 1.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 86 EQAQREAERIAAEKAEAEHVEQQRIAAERL-EAERLEQERIAAERLEAERLEQERIAAERLEAERLEQERIAAEQAEAE- 163
Cdd:PTZ00121 1101 EEAKKTETGKAEEARKAEEAKKKAEDARKAeEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEa 1180
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 930309241 164 --RLEQERIAAERLEAERLEQERIAAEHAEAERLEQQRIAAEQAEAEHLEQ-ERIAAEQAEAERLEQQR 229
Cdd:PTZ00121 1181 arKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKaEEAKKDAEEAKKAEEER 1249
|
|
| Casc1_N |
pfam15927 |
Cancer susceptibility candidate 1 N-terminus; This presumed domain is functionally ... |
131-197 |
1.56e-04 |
|
Cancer susceptibility candidate 1 N-terminus; This presumed domain is functionally uncharacterized. This domain family is found in eukaryotes, and is approximately 200 amino acids in length. The family is found in association with pfam12366. There are two completely conserved residues (N and W) that may be functionally important.
Pssm-ID: 464947 [Multi-domain] Cd Length: 201 Bit Score: 43.12 E-value: 1.56e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 930309241 131 EAERLEQERIAAERLEAERLEQERIAAEQAEAERLEQERIAAERLEAER-LEQERIAAEHAEAERLEQ 197
Cdd:pfam15927 2 RLREEEEERLRAEEEEAERLEEERREEEEEERLAAEQDRRAEELEELKHlLEERKEALEKLRAEAREE 69
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
24-218 |
1.66e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.57 E-value: 1.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 24 KAEAEHVEQERIAAEARDAERLAIADAELAAAEKAEQQRRDEAARLAEQQEAML---LQQEQQATEQAQREAERIAAEKA 100
Cdd:TIGR00618 250 EAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTqieQQAQRIHTELQSKMRSRAKLLMK 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 101 EAEHVEQQriaAERLEAERLEQERIAAERLEAERLEQERIAAERLEAERLEQERIAAEQAEAERLEQ-ERIAAERLEAER 179
Cdd:TIGR00618 330 RAAHVKQQ---SSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQkLQSLCKELDILQ 406
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 930309241 180 LEQERIAAEHAEAERLEQQRIAAE---QAEAEHLEQERIAAE 218
Cdd:TIGR00618 407 REQATIDTRTSAFRDLQGQLAHAKkqqELQQRYAELCAAAIT 448
|
|
| PRK05035 |
PRK05035 |
electron transport complex protein RnfC; Provisional |
15-223 |
2.18e-04 |
|
electron transport complex protein RnfC; Provisional
Pssm-ID: 235334 [Multi-domain] Cd Length: 695 Bit Score: 44.17 E-value: 2.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 15 REAERIAAEKA----EA-----EHVEQERIAAEARDAERLAIADAE--LAAAEKAEQQRRDEAARLAEQQEAMLLQQEQQ 83
Cdd:PRK05035 441 IEQEKKKAEEAkarfEArqarlEREKAAREARHKKAAEARAAKDKDavAAALARVKAKKAAATQPIVIKAGARPDNSAVI 520
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 84 ATEQAQREAERIAAEKAEAEHVEQQRIAA-----ERLEAERLEQERIAAERLEAERLEQERIAA--ERLEAERLEQERIA 156
Cdd:PRK05035 521 AAREARKAQARARQAEKQAAAAADPKKAAvaaaiARAKAKKAAQQAANAEAEEEVDPKKAAVAAaiARAKAKKAAQQAAS 600
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 157 AEQAEAERLEQERIAA-----ERLEAERLEQE--------------RIAAE--HAEAERLEQQRIAAEQAEAEHLEQERI 215
Cdd:PRK05035 601 AEPEEQVAEVDPKKAAvaaaiARAKAKKAEQQanaepeepvdprkaAVAAAiaRAKARKAAQQQANAEPEEAEDPKKAAV 680
|
....*...
gi 930309241 216 AAEQAEAE 223
Cdd:PRK05035 681 AAAIARAK 688
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
15-229 |
2.87e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.89 E-value: 2.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 15 REAERIAAEKAEAEHVEQERIAAEARDAERLAIADAELAAAEKAEQQRRDEAARLAEQQEAMLLQQEQQATEQAQREAER 94
Cdd:TIGR02168 242 EELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEEL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 95 iaaeKAEAEHVEQQRIAAERLEAERLEQERIAAERLEAERLEQERIAAERLEAER----LEQERIAAEQAEAERLEQERI 170
Cdd:TIGR02168 322 ----EAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESrleeLEEQLETLRSKVAQLELQIAS 397
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 930309241 171 AAERLEAERLEQERIAAEHA--------------EAERLEQQRIAAEQAEAEHLEQERIAAEQAEAERLEQQR 229
Cdd:TIGR02168 398 LNNEIERLEARLERLEDRRErlqqeieellkkleEAELKELQAELEELEEELEELQEELERLEEALEELREEL 470
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
14-230 |
3.09e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.89 E-value: 3.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 14 QREAERIAAEKAEaehvEQERIAAEARDAERLAIADAELAAAEKAEQQRRDEAARLAEQQEAMLLQQEQQATEQAQREAE 93
Cdd:TIGR02168 700 LAELRKELEELEE----ELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEE 775
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 94 RIAAEKAEAEHVEQQriaAERLEAERLEQERIAAERLEAERLEQERIAAERLEAERLEQERIAAEQ---AEAERLEQERI 170
Cdd:TIGR02168 776 ELAEAEAEIEELEAQ---IEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERrleDLEEQIEELSE 852
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 930309241 171 AAERLEAERLE-QERIAAEHAEAERLEQQRIAAEQAEAEHLEQERIAAEQAEAERLEQQRI 230
Cdd:TIGR02168 853 DIESLAAEIEElEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSEL 913
|
|
| TPH |
pfam13868 |
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of ... |
15-229 |
3.29e-04 |
|
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of eukaryotic proteins. Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). The family is in the trichohyalin-plectin-homology domain.
Pssm-ID: 464007 [Multi-domain] Cd Length: 341 Bit Score: 42.98 E-value: 3.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 15 REAERIAAEKAEAEHVEQERIAAEARDAERLAIADAELAAAEKAEQQRRDEAARLAEQ-QEAMLLQQEQQATEQAQREAE 93
Cdd:pfam13868 24 RDAQIAEKKRIKAEEKEEERRLDEMMEEERERALEEEEEKEEERKEERKRYRQELEEQiEEREQKRQEEYEEKLQEREQM 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 94 RIAAEKAEAEHVEQQRIAAERLEAERLEQERIAAERLEAERLEQERiaaerleaERLEQERIAAEQAEAERLEQERIA-- 171
Cdd:pfam13868 104 DEIVERIQEEDQAEAEEKLEKQRQLREEIDEFNEEQAEWKELEKEE--------EREEDERILEYLKEKAEREEEREAer 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 172 AERLEAERLEQERIAA--EHAEAERLEQQRIAAEQAEAEHLEQERIAAEQAEAERLEQQR 229
Cdd:pfam13868 176 EEIEEEKEREIARLRAqqEKAQDEKAERDELRAKLYQEEQERKERQKEREEAEKKARQRQ 235
|
|
| TPH |
pfam13868 |
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of ... |
15-225 |
3.35e-04 |
|
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of eukaryotic proteins. Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). The family is in the trichohyalin-plectin-homology domain.
Pssm-ID: 464007 [Multi-domain] Cd Length: 341 Bit Score: 42.98 E-value: 3.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 15 REAERIAAEKAEAEHVEQERIAAEARDAERLAIADAELAAAEKAEQQRRDEaarlAEQQEAMLLQQEQQATEQAQREAER 94
Cdd:pfam13868 130 EEIDEFNEEQAEWKELEKEEEREEDERILEYLKEKAEREEEREAEREEIEE----EKEREIARLRAQQEKAQDEKAERDE 205
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 95 IAAEKAEAEHVEQQRIAAERLEAERLEQERIAAERLEAERLEQERIAAERLEAERLEQERIAAEQAEAERLEQERIAAER 174
Cdd:pfam13868 206 LRAKLYQEEQERKERQKEREEAEKKARQRQELQQAREEQIELKERRLAEEAEREEEEFERMLRKQAEDEEIEQEEAEKRR 285
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 930309241 175 LEAE--RLEQERIAAEHAEAERLEQQRIAAEQAEAEHLEQERIAAEQAEAERL 225
Cdd:pfam13868 286 MKRLehRRELEKQIEEREEQRAAEREEELEEGERLREEEAERRERIEEERQKK 338
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
15-184 |
3.98e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.19 E-value: 3.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 15 REAERIAAEKAEAEHVEQERIAAE-ARDAERLAIADaelaaaekaeQQRRDEAARLAEQQEamllqqeqqATEQAQREAE 93
Cdd:pfam17380 420 VEMEQIRAEQEEARQREVRRLEEErAREMERVRLEE----------QERQQQVERLRQQEE---------ERKRKKLELE 480
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 94 RIAAEKAEAEHvEQQRIAAERLEAER---LEQERiAAERLEAERLEQERIAAERLEAERLEQERIAAEQAEAERLEQERI 170
Cdd:pfam17380 481 KEKRDRKRAEE-QRRKILEKELEERKqamIEEER-KRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQM 558
|
170
....*....|....*..
gi 930309241 171 ---AAERLEAERLEQER 184
Cdd:pfam17380 559 rkaTEERSRLEAMERER 575
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
128-224 |
4.59e-04 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 43.28 E-value: 4.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 128 ERLEAERLEQERiAAERLEAERLEQERIAAE-QAEAERLeQERIAAERLEAERLEQERIAAEHAEAErleqqRIAAEQAE 206
Cdd:PRK00409 523 ASLEELERELEQ-KAEEAEALLKEAEKLKEElEEKKEKL-QEEEDKLLEEAEKEAQQAIKEAKKEAD-----EIIKELRQ 595
|
90
....*....|....*...
gi 930309241 207 AEHLEQERIAAEQAEAER 224
Cdd:PRK00409 596 LQKGGYASVKAHELIEAR 613
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
15-227 |
5.37e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.21 E-value: 5.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 15 REAERIAAEKAEAEHVEQERIAAEARDAERLAIADAELAAAEKAEQQRRDEAARLAEQQEAMLLQQEQQATEQAQ----- 89
Cdd:PTZ00121 1296 KKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEkkkee 1375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 90 --REAERIAAEKAEAEHVEQQRIAAERLEAERLEQERIAAERLEAERLEQEriAAERLEAERLEQERIAAEQA-EAERLE 166
Cdd:PTZ00121 1376 akKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKK--AEEKKKADEAKKKAEEAKKAdEAKKKA 1453
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 930309241 167 QERIAAERL-----EAERLEQERIAAEhaEAERLEQQRIAAEQAEAEHLEQERIAAEQAEAERLEQ 227
Cdd:PTZ00121 1454 EEAKKAEEAkkkaeEAKKADEAKKKAE--EAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKK 1517
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
15-238 |
5.65e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.21 E-value: 5.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 15 REAErIAAEKAEAEHVEQERIAAEARDAE--RLAIADAELAAAEKAEQQRRDEAARLAEQQ---EAMLLQQEQQATEQAQ 89
Cdd:PTZ00121 1164 RKAE-EARKAEDAKKAEAARKAEEVRKAEelRKAEDARKAEAARKAEEERKAEEARKAEDAkkaEAVKKAEEAKKDAEEA 1242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 90 REAERI-------AAEKAEAEHVEQQRIAAERLEAERLEQERIAAERLEAERLE--QERIAAERL-----EAERLEQERI 155
Cdd:PTZ00121 1243 KKAEEErnneeirKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKkaEEKKKADEAkkkaeEAKKADEAKK 1322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 156 AAEQAEAERLEQERIAAERLEAERLEQERIAAEHAEAERLEQQRIAAEQAEAEHLEQERIAAEQAEAER--------LEQ 227
Cdd:PTZ00121 1323 KAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKkadeakkkAEE 1402
|
250
....*....|.
gi 930309241 228 QRIAAEEAKAA 238
Cdd:PTZ00121 1403 DKKKADELKKA 1413
|
|
| PRK05035 |
PRK05035 |
electron transport complex protein RnfC; Provisional |
97-223 |
7.08e-04 |
|
electron transport complex protein RnfC; Provisional
Pssm-ID: 235334 [Multi-domain] Cd Length: 695 Bit Score: 42.63 E-value: 7.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 97 AEKAEaehveqqrIAAERLEAERLEQeriAAERLEA--ERLEQERiaAERleAERLEQeriAAEQAEAERLEQERIAAER 174
Cdd:PRK05035 433 QAKAE--------IRAIEQEKKKAEE---AKARFEArqARLEREK--AAR--EARHKK---AAEARAAKDKDAVAAALAR 494
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 930309241 175 LEAERLEQERIAAEHAEAERLEQQRIAAEQAEAEHLEQERIAAEQAEAE 223
Cdd:PRK05035 495 VKAKKAAATQPIVIKAGARPDNSAVIAAREARKAQARARQAEKQAAAAA 543
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
17-227 |
7.60e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 7.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 17 AERIAAEKAEAEHVeQERIAAEARDAERLAIADAELAAAEKAEQQRRDEAARLAEQQEAMLLQQEQQATEQAQREAEria 96
Cdd:COG4942 19 ADAAAEAEAELEQL-QQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE--- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 97 aekAEAEHVEQQRIAAERL-------------------EAERLEQERIAAERLEAERLEQ-ERIAAERLEAERLEQERIA 156
Cdd:COG4942 95 ---LRAELEAQKEELAELLralyrlgrqpplalllspeDFLDAVRRLQYLKYLAPARREQaEELRADLAELAALRAELEA 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 930309241 157 AEQAEAERLEQERIAAERLEAERLEQERIAAEHAEAERLEQQRIAAEQAEAEHLEQERIAAEQAEAERLEQ 227
Cdd:COG4942 172 ERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
61-229 |
8.43e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 42.33 E-value: 8.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 61 QRRDEAARLAEQQEAmlLQQEQQATEQAQREAERIAAEKAEAEHVEQQRIAAERLEAERleQERIAAERleaERLEQERI 140
Cdd:PRK02224 472 EDRERVEELEAELED--LEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAER--RETIEEKR---ERAEELRE 544
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 141 AAERLEAERLEQERIAAEQAEAERLEQERIAA------------ERLEAERLEQERIAAEHAEAERLEQQRiaAEQAEAE 208
Cdd:PRK02224 545 RAAELEAEAEEKREAAAEAEEEAEEAREEVAElnsklaelkeriESLERIRTLLAAIADAEDEIERLREKR--EALAELN 622
|
170 180 190
....*....|....*....|....*....|
gi 930309241 209 HLEQERIA---------AEQAEAERLEQQR 229
Cdd:PRK02224 623 DERRERLAekrerkrelEAEFDEARIEEAR 652
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
15-238 |
9.03e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.44 E-value: 9.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 15 REAERIAAEKAEAEHVEQERIAAEARDAERLAIADAELAAAEKAEQQRR--DEAARLAEQQEAmllqqEQQATEQAQREA 92
Cdd:PTZ00121 1230 KKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARkaDELKKAEEKKKA-----DEAKKAEEKKKA 1304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 93 ERIAAEKAEAEHVEQQRIAAERLEAERLEQERIAAERLEAERLEQERIAAERLEAERLEQERIAAE-QAEAERLEQERIA 171
Cdd:PTZ00121 1305 DEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEkKKEEAKKKADAAK 1384
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 930309241 172 AERLEAERLEQERIAAEHAEAERLEQQRIAAEQAEAEHLEQEriAAEQAEAERLEQQriaAEEAKAA 238
Cdd:PTZ00121 1385 KKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKK--AEEKKKADEAKKK---AEEAKKA 1446
|
|
| PLN02316 |
PLN02316 |
synthase/transferase |
145-191 |
1.04e-03 |
|
synthase/transferase
Pssm-ID: 215180 [Multi-domain] Cd Length: 1036 Bit Score: 42.16 E-value: 1.04e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 930309241 145 LEAERLEQERIAAEQAEAERL--EQERIAAER--LEAERLEQERIAAEHAE 191
Cdd:PLN02316 251 LEEKRRELEKLAKEEAERERQaeEQRRREEEKaaMEADRAQAKAEVEKRRE 301
|
|
| hsdR |
PRK11448 |
type I restriction enzyme EcoKI subunit R; Provisional |
97-196 |
1.11e-03 |
|
type I restriction enzyme EcoKI subunit R; Provisional
Pssm-ID: 236912 [Multi-domain] Cd Length: 1123 Bit Score: 41.86 E-value: 1.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 97 AEKAEAEHVEQQRIAAERLEAERLEQERIAAERLeAERLEQERIAAERLEAERleQERIAAEQAEAERLEQERIAAErle 176
Cdd:PRK11448 138 EDPENLLHALQQEVLTLKQQLELQAREKAQSQAL-AEAQQQELVALEGLAAEL--EEKQQELEAQLEQLQEKAAETS--- 211
|
90 100
....*....|....*....|
gi 930309241 177 AERLEQERIAAEHAeAERLE 196
Cdd:PRK11448 212 QERKQKRKEITDQA-AKRLE 230
|
|
| tolA_full |
TIGR02794 |
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the ... |
60-229 |
1.15e-03 |
|
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB. [Transport and binding proteins, Other, Cellular processes, Pathogenesis]
Pssm-ID: 274303 [Multi-domain] Cd Length: 346 Bit Score: 41.37 E-value: 1.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 60 QQRRDEAARLAEQQEAMLLQQEQQATEQAQREAERIAAEKAEAEHVEQQRiAAERLEAERLEQERIAAERleAERLEQER 139
Cdd:TIGR02794 56 QQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAK-QAEQAAKQAEEKQKQAEEA--KAKQAAEA 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 140 IAAERLEAERLEQERiAAEQAEAERLEQERIAAERLEAE-RLEQERIAAEHAEAERLEQQRIAAEQAEAEHLEQERIAAE 218
Cdd:TIGR02794 133 KAKAEAEAERKAKEE-AAKQAEEEAKAKAAAEAKKKAEEaKKKAEAEAKAKAEAEAKAKAEEAKAKAEAAKAKAAAEAAA 211
|
170
....*....|.
gi 930309241 219 QAEAERLEQQR 229
Cdd:TIGR02794 212 KAEAEAAAAAA 222
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
90-276 |
1.24e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.05 E-value: 1.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 90 REAERIAAEKA---EAEHVEQQRIAAERLEAERLEQERIAAERLEAERLEQERIAAERLEAERLEQERIAAEQAEAERLE 166
Cdd:PTZ00121 1088 RADEATEEAFGkaeEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAE 1167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 167 QERIAAErleAERLEQERIAAEHAEAERLEQQRIAAEQAEAEHLEQERIAAE--QAEAERLEQQRIAAEEAKAAEKPKKE 244
Cdd:PTZ00121 1168 EARKAED---AKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEarKAEDAKKAEAVKKAEEAKKDAEEAKK 1244
|
170 180 190
....*....|....*....|....*....|..
gi 930309241 245 GFFARLKKGLLKTRVNIGSGFASIFTGKKIDD 276
Cdd:PTZ00121 1245 AEEERNNEEIRKFEEARMAHFARRQAAIKAEE 1276
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
15-239 |
1.38e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 41.67 E-value: 1.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 15 REAERiAAEKAEAEHVEQERIAAEAR---DAERLAIADAELAAAEKAEQQRRDEAARLAEQQ---EAMLLQQEQQATEQA 88
Cdd:PTZ00121 1194 RKAED-ARKAEAARKAEEERKAEEARkaeDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIrkfEEARMAHFARRQAAI 1272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 89 QREAERIAAEKAEAEHVEQQRIAAERLEAERLEQERIAAErlEAERLEQERIAAERLEAERLEQERIAAEQAEAERLEQE 168
Cdd:PTZ00121 1273 KAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAE--EAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKA 1350
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 930309241 169 RIAAERLEAERLEQERIAAEHAEAERLEQQRIAAEQAE----AEHL----EQERIAAEQAEAERLEQQRIAAEEAKAAE 239
Cdd:PTZ00121 1351 EAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEekkkADEAkkkaEEDKKKADELKKAAAAKKKADEAKKKAEE 1429
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
16-196 |
2.55e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 40.79 E-value: 2.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 16 EAERIAAEKAEAEHVEQERIAAEARD-AERLAIADAELAAAEKAEQQRRDEAARLAEQQEAMllqQEQQATEQAQREAER 94
Cdd:PRK02224 540 EELRERAAELEAEAEEKREAAAEAEEeAEEAREEVAELNSKLAELKERIESLERIRTLLAAI---ADAEDEIERLREKRE 616
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 95 IAAEKAE------AEHVEQQRIAAERLEAERLEQERIAAERLEaERLEQERIAAERLEAERLE-QERIAAEQAEAERLEQ 167
Cdd:PRK02224 617 ALAELNDerrerlAEKRERKRELEAEFDEARIEEAREDKERAE-EYLEQVEEKLDELREERDDlQAEIGAVENELEELEE 695
|
170 180
....*....|....*....|....*....
gi 930309241 168 ERiaaERLEAERLEQERIAAEHAEAERLE 196
Cdd:PRK02224 696 LR---ERREALENRVEALEALYDEAEELE 721
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
23-229 |
2.95e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 40.41 E-value: 2.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 23 EKAEAEHVEQERIAAEARDAERLAIADAELAAAEKAEQQRRDEA-ARLAEQQEAMLLQQEQQATEQAQREAERIAAEKAE 101
Cdd:PRK02224 485 EDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERrETIEEKRERAEELRERAAELEAEAEEKREAAAEAE 564
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 102 aEHVEQQRIAAERLEAERLE-QERIaaERLEAERLEQERIAAERLEAERLEQERiaAEQAEAERLEQERIAAER-----L 175
Cdd:PRK02224 565 -EEAEEAREEVAELNSKLAElKERI--ESLERIRTLLAAIADAEDEIERLREKR--EALAELNDERRERLAEKRerkreL 639
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 930309241 176 EAErLEQERIAAEHAEAERLEQQRIAAEQAEAEHLE-----QERIAAEQAEAERLEQQR 229
Cdd:PRK02224 640 EAE-FDEARIEEAREDKERAEEYLEQVEEKLDELREerddlQAEIGAVENELEELEELR 697
|
|
| TPH |
pfam13868 |
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of ... |
15-230 |
3.20e-03 |
|
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of eukaryotic proteins. Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). The family is in the trichohyalin-plectin-homology domain.
Pssm-ID: 464007 [Multi-domain] Cd Length: 341 Bit Score: 39.90 E-value: 3.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 15 REAERIAAEKAEAEHVE--QERIAAEARDAERLAIADAELAAAEKAEQQRRDEAARLAEQQEAMLLQQEQQATEQAQREA 92
Cdd:pfam13868 39 KEEERRLDEMMEEERERalEEEEEKEEERKEERKRYRQELEEQIEEREQKRQEEYEEKLQEREQMDEIVERIQEEDQAEA 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 93 ERIAAEK----AEAEHVEQQRIAAERLEAERLEQERIAAERLEAERLEQERIAAERLEAERLEQERIAA------EQAEA 162
Cdd:pfam13868 119 EEKLEKQrqlrEEIDEFNEEQAEWKELEKEEEREEDERILEYLKEKAEREEEREAEREEIEEEKEREIArlraqqEKAQD 198
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 930309241 163 ERLEQERIAAERLEAERLEQERiAAEHAEAERLEQQRIAAEQAEAEHLEQERIA-AEQAEAERLEQQRI 230
Cdd:pfam13868 199 EKAERDELRAKLYQEEQERKER-QKEREEAEKKARQRQELQQAREEQIELKERRlAEEAEREEEEFERM 266
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
33-199 |
3.64e-03 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 40.27 E-value: 3.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 33 ERIAA--EARDAERLAIADAELAAAEKAEQQRRDEAARLAEQQEAMLLQQEQQATEQAQREAERIAAEKAEAEHVEQQRI 110
Cdd:PRK12678 50 ELIAAikEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARE 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 111 AAERLEAERLEQERIAAERLEAERLEQERIAAERLEAERLEQERIAAEQAEAERLEQERIAAERLEAERLEQERIAAEHA 190
Cdd:PRK12678 130 RRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRR 209
|
....*....
gi 930309241 191 EAERLEQQR 199
Cdd:PRK12678 210 EQGDRREER 218
|
|
| DEXSc_RecD-like |
cd17933 |
DEXS-box helicase domain of RecD and similar proteins; RecD is a member of the RecBCD (EC 3.1. ... |
343-455 |
3.90e-03 |
|
DEXS-box helicase domain of RecD and similar proteins; RecD is a member of the RecBCD (EC 3.1.11.5, Exonuclease V) complex. It is the alpha chain of the complex and functions as a 3'-5' helicase. The RecBCD enzyme is both a helicase that unwinds, or separates the strands of DNA, and a nuclease that makes single-stranded nicks in DNA. RecD is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350691 [Multi-domain] Cd Length: 155 Bit Score: 38.30 E-value: 3.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 343 KKPFVILmVGVNGVGKTTTIGKLAKQFQDEGKSVMLAAgDTFRAAAVeqLqvwGERNKIPV--IAQHTGADSASVVFDaF 420
Cdd:cd17933 11 RNRVSVL-TGGAGTGKTTTLKALLAALEAEGKRVVLAA-PTGKAAKR--L---SESTGIEAstIHRLLGINPGGGGFY-Y 82
|
90 100 110
....*....|....*....|....*....|....*....
gi 930309241 421 QAAKARNVDVLIADTAG----RLQNKdnLMQELEKIARV 455
Cdd:cd17933 83 NEENPLDADLLIVDEASmvdtRLMAA--LLSAIPAGARL 119
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
117-230 |
4.19e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 40.02 E-value: 4.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 117 AERLEQERIAAERLEAErLEQERIAAERLEAERLEQERIAAEQAEAERLEQERIAAERLEAERleQERIAAEhaeAERLE 196
Cdd:PRK02224 467 VETIEEDRERVEELEAE-LEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAER--RETIEEK---RERAE 540
|
90 100 110
....*....|....*....|....*....|....
gi 930309241 197 QQRIAAEQAEAEHLEQERIAAEQAEAERLEQQRI 230
Cdd:PRK02224 541 ELRERAAELEAEAEEKREAAAEAEEEAEEAREEV 574
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
116-228 |
4.40e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 39.94 E-value: 4.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 116 EAERLEQERIAAERLEaeRLEQERIAAERLEAERL---EQERIAAEQAEAERLEQE---RIAAERLEAERLEQERIAAEH 189
Cdd:PRK04863 488 EVSRSEAWDVARELLR--RLREQRHLAEQLQQLRMrlsELEQRLRQQQRAERLLAEfckRLGKNLDDEDELEQLQEELEA 565
|
90 100 110
....*....|....*....|....*....|....*....
gi 930309241 190 AEAERLEQQRIAAEQAEAEHLEQERIAAEQAEAERLEQQ 228
Cdd:PRK04863 566 RLESLSESVSEARERRMALRQQLEQLQARIQRLAARAPA 604
|
|
| Mitofilin |
pfam09731 |
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ... |
107-214 |
4.43e-03 |
|
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.
Pssm-ID: 430783 [Multi-domain] Cd Length: 618 Bit Score: 39.74 E-value: 4.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 107 QQRIAAERLEAERLEQERIAAERLEAERLEQERIAaeRLEAERLEQERIAAEQAEAERLEQERIAAERLEAERLEQERIA 186
Cdd:pfam09731 300 SKKLAELKKREEKHIERALEKQKEELDKLAEELSA--RLEEVRAADEAQLRLEFEREREEIRESYEEKLRTELERQAEAH 377
|
90 100 110
....*....|....*....|....*....|.
gi 930309241 187 AEHAEAERLEQQ---RIAAEQAEAEHLEQER 214
Cdd:pfam09731 378 EEHLKDVLVEQEielQREFLQDIKEKVEEER 408
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
19-230 |
4.45e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 39.95 E-value: 4.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 19 RIAAEKAEAEHVEQERIAAEARDAERLAIADAELAAAEKAEQQRRDEAARLAEQQEAMLLQQE-QQATEQAQREAERIAA 97
Cdd:TIGR00618 195 KAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKkQQLLKQLRARIEELRA 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 98 EKAEAEHVEQQRIAAERLEAERLEQERIAAERLEAERLEQERIAAERLEAERLEQERIAAEQ----AEAERLEQERIAAE 173
Cdd:TIGR00618 275 QEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQqssiEEQRRLLQTLHSQE 354
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 930309241 174 RLEAERLEQERIAAEHAEAERLEQQRIAAEQAEAEHLEQ-ERIAAEQAEAERLEQQRI 230
Cdd:TIGR00618 355 IHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQkLQSLCKELDILQREQATI 412
|
|
| PLN02316 |
PLN02316 |
synthase/transferase |
175-229 |
4.60e-03 |
|
synthase/transferase
Pssm-ID: 215180 [Multi-domain] Cd Length: 1036 Bit Score: 39.85 E-value: 4.60e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 930309241 175 LEAERLEQERIAAEHAEAERL--EQQRIAAEQAEAEhleqeriaAEQAEAERLEQQR 229
Cdd:PLN02316 251 LEEKRRELEKLAKEEAERERQaeEQRRREEEKAAME--------ADRAQAKAEVEKR 299
|
|
| TolA |
COG3064 |
Membrane protein TolA involved in colicin uptake [Cell wall/membrane/envelope biogenesis]; |
60-390 |
5.08e-03 |
|
Membrane protein TolA involved in colicin uptake [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442298 [Multi-domain] Cd Length: 485 Bit Score: 39.64 E-value: 5.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 60 QQRRDEAARLAEQQEAMLLQQEQQATEQAQREAERIAAEKAEAEHVEQQRIAAERLEAERLEQERIAAERLEAERLEQER 139
Cdd:COG3064 17 RLEQAEAEKRAAAEAEQKAKEEAEEERLAELEAKRQAEEEAREAKAEAEQRAAELAAEAAKKLAEAEKAAAEAEKKAAAE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 140 IAAERLEAERLEQERIAAEQAEAERLEQERIAAERLEAERLEQERIAAEHAEAERLEQQRIAAEQAEAEHLEQERIAAEQ 219
Cdd:COG3064 97 KAKAAKEAEAAAAAEKAAAAAEKEKAEEAKRKAEEEAKRKAEEERKAAEAEAAAKAEAEAARAAAAAAAAAAAAAARAAA 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 220 AEAERLEQQRIAAEEAKAAEKPKKEGFFARLKKGLLKTRVNIGSGFASIFTGKKIDDELFEDLETQLLTADLGVDTTMKL 299
Cdd:COG3064 177 GAAAALVAAAAAAVEAADTAAAAAAALAAAAAAAAADAALLALAVAARAAAASREAALAAVEATEEAALGGAEEAADLAA 256
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 300 IDSLTDAANRKQLKDGDALYELMKQEMAAMLKTAEQPLVIPADKKPFVILMVGVNGVGKTTTIGKLAKQFQDEGKSVMLA 379
Cdd:COG3064 257 VGVLGAALAAAAAGAAALSSGLVVVAAALAGLAAAAAGLVLDDSAALAAELLGAVAAEEAVLAAAAAAGALVVRGGGAAS 336
|
330
....*....|.
gi 930309241 380 AGDTFRAAAVE 390
Cdd:COG3064 337 LEAALSLLAAG 347
|
|
| PLN02316 |
PLN02316 |
synthase/transferase |
130-176 |
5.74e-03 |
|
synthase/transferase
Pssm-ID: 215180 [Multi-domain] Cd Length: 1036 Bit Score: 39.47 E-value: 5.74e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 930309241 130 LEAERLEQERIAAERLEAERL--EQERIAAEQA--EAERLEQERIAAERLE 176
Cdd:PLN02316 251 LEEKRRELEKLAKEEAERERQaeEQRRREEEKAamEADRAQAKAEVEKRRE 301
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
90-229 |
6.15e-03 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 39.50 E-value: 6.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 90 REAERIAAEKAEAEHVEQQRIAAERLEAERLEQERIAAERLEAERLEQERIAAERLEAERLEQERIAAEQAEAERLEQER 169
Cdd:PRK12678 79 RAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARA 158
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 170 IAAERLEAERLEQERIAAEHAEAERlEQQRIAAEQAEAEHLEQERIAAEQAEAERLEQQR 229
Cdd:PRK12678 159 DAAERTEEEERDERRRRGDREDRQA-EAERGERGRREERGRDGDDRDRRDRREQGDRREE 217
|
|
| tolA |
PRK09510 |
cell envelope integrity inner membrane protein TolA; Provisional |
109-221 |
6.36e-03 |
|
cell envelope integrity inner membrane protein TolA; Provisional
Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 39.02 E-value: 6.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 109 RIAAERLEAERLEQERIAAERLEAERLEQErIAAERLEAERLEQERIAAEQAEAERLEQERIAAERLEAERLEQERIAAE 188
Cdd:PRK09510 66 RQQQQQKSAKRAEEQRKKKEQQQAEELQQK-QAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAA 144
|
90 100 110
....*....|....*....|....*....|...
gi 930309241 189 HAEAERLEQQRIAAEQAEAEHLEQERIAAEQAE 221
Cdd:PRK09510 145 AKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAK 177
|
|
| Casc1_N |
pfam15927 |
Cancer susceptibility candidate 1 N-terminus; This presumed domain is functionally ... |
176-229 |
6.57e-03 |
|
Cancer susceptibility candidate 1 N-terminus; This presumed domain is functionally uncharacterized. This domain family is found in eukaryotes, and is approximately 200 amino acids in length. The family is found in association with pfam12366. There are two completely conserved residues (N and W) that may be functionally important.
Pssm-ID: 464947 [Multi-domain] Cd Length: 201 Bit Score: 38.11 E-value: 6.57e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 930309241 176 EAERLEQERIAAEHAEAERLEQQRIAAEQAEAEHLEQERIAAEQAEAERLEQQR 229
Cdd:pfam15927 2 RLREEEEERLRAEEEEAERLEEERREEEEEERLAAEQDRRAEELEELKHLLEER 55
|
|
| hsdR |
PRK11448 |
type I restriction enzyme EcoKI subunit R; Provisional |
156-229 |
7.30e-03 |
|
type I restriction enzyme EcoKI subunit R; Provisional
Pssm-ID: 236912 [Multi-domain] Cd Length: 1123 Bit Score: 39.16 E-value: 7.30e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 930309241 156 AAEQAEAERLEQERIAAERLEAERLEQ-ERIAAEHAEAERLEQQRIAAEQAEAEHLEQERIAAEQAEAERLEQQR 229
Cdd:PRK11448 145 HALQQEVLTLKQQLELQAREKAQSQALaEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAETSQERKQKRK 219
|
|
| growth_prot_Scy |
NF041483 |
polarized growth protein Scy; |
19-225 |
7.69e-03 |
|
polarized growth protein Scy;
Pssm-ID: 469371 [Multi-domain] Cd Length: 1293 Bit Score: 39.42 E-value: 7.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 19 RIAAEKAEAEHVEQERIAAEARDaerlaIADAELAAAEKAEQQRRDEAARLAEQQEAmllqqeqqateQAQREAERIAAE 98
Cdd:NF041483 520 RQAEETLERTRAEAERLRAEAEE-----QAEEVRAAAERAARELREETERAIAARQA-----------EAAEELTRLHTE 583
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 99 KAEAEHVEQQRIAAERLEAERLEQERI-AAERLEAERLEQERI--AAERLEAERLEQEriAAEQAEAERLEQERIA---- 171
Cdd:NF041483 584 AEERLTAAEEALADARAEAERIRREAAeETERLRTEAAERIRTlqAQAEQEAERLRTE--AAADASAARAEGENVAvrlr 661
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 930309241 172 ------AERLEAERLEQ-ERIAAEHAEAerleQQRIAAEQAEAEHLEQERIAAEQAEAERL 225
Cdd:NF041483 662 seaaaeAERLKSEAQESaDRVRAEAAAA----AERVGTEAAEALAAAQEEAARRRREAEET 718
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
15-226 |
7.89e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 39.25 E-value: 7.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 15 REAERIAAEKAEAEHVEQERIAAEARDAERLAIADAELAAAEKAEQQRRDEAARLAEQQEAML-----LQQEQQATEQAQ 89
Cdd:PRK02224 509 DRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAReevaeLNSKLAELKERI 588
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 90 REAERIAAEKAEAEHVEQQRIAAERLEAERLEQERIAAERLeAERLEQERIAAERLEAERLEQERIAAEQAEaERLEQER 169
Cdd:PRK02224 589 ESLERIRTLLAAIADAEDEIERLREKREALAELNDERRERL-AEKRERKRELEAEFDEARIEEAREDKERAE-EYLEQVE 666
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 930309241 170 IAAERLEAERLE-QERIAAEHAEAERLEQQRIAAEQAEAEHleqERIAAEQAEAERLE 226
Cdd:PRK02224 667 EKLDELREERDDlQAEIGAVENELEELEELRERREALENRV---EALEALYDEAEELE 721
|
|
| TolA |
COG3064 |
Membrane protein TolA involved in colicin uptake [Cell wall/membrane/envelope biogenesis]; |
21-460 |
8.31e-03 |
|
Membrane protein TolA involved in colicin uptake [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442298 [Multi-domain] Cd Length: 485 Bit Score: 38.87 E-value: 8.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 21 AAEKAEAEHVEQERIAAEARDAERLAIADAELAAAEKAEQQRRDEAARLAEQQEAMLLQQEQQATEQAQREAERIAAEKA 100
Cdd:COG3064 4 ALEEKAAEAAAQERLEQAEAEKRAAAEAEQKAKEEAEEERLAELEAKRQAEEEAREAKAEAEQRAAELAAEAAKKLAEAE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 101 EAEHVEQQRIAAERLEAERLEQERIAAERL----EAERLEQERIAAERLEAERLEQERIAAEQAEAERLEQERIAAERLE 176
Cdd:COG3064 84 KAAAEAEKKAAAEKAKAAKEAEAAAAAEKAaaaaEKEKAEEAKRKAEEEAKRKAEEERKAAEAEAAAKAEAEAARAAAAA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 177 AERLEQERIAAEHAEAERLEQQRIAAEQAEAEHLEQERIAAEQAEAERLEQQRIAAEEAKAAEKPKKEGFFARLKKGLLK 256
Cdd:COG3064 164 AAAAAAAAARAAAGAAAALVAAAAAAVEAADTAAAAAAALAAAAAAAAADAALLALAVAARAAAASREAALAAVEATEEA 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 257 TRVNIGSGFASIFTGKKIDDELFEDLETQLLTADLGVDTTMKLIDSLTDAANRKQLKDGDALYELMKQEMAAMLKTAEQP 336
Cdd:COG3064 244 ALGGAEEAADLAAVGVLGAALAAAAAGAAALSSGLVVVAAALAGLAAAAAGLVLDDSAALAAELLGAVAAEEAVLAAAAA 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 337 LVIPADKKPFVILMVGVNGVGKTTTIGKLAKQFQDEGKSVMLAAGDTFRAAAVEQLQVWGERNKIPVIAQHTGADSASVV 416
Cdd:COG3064 324 AGALVVRGGGAASLEAALSLLAAGAAAAAAGAGALATGALGDALAAEAAGALLLGKLADVEEAAGAGILAAAGGGGLLGL 403
|
410 420 430 440
....*....|....*....|....*....|....*....|....
gi 930309241 417 FDAFQAAKARNVDVLIADTAGRLQNKDNLMQELEKIARVMKKID 460
Cdd:COG3064 404 RLDLGAALLEAASAVELRVLLALAGAAGAVVALLVKLVADLAGG 447
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
19-228 |
8.43e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 39.05 E-value: 8.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 19 RIAAEKAEAEHVEQERIAAEARDAERLAIADAELAAAEKAEQQRRDEAARLAEQQEAMLLQQEQQATEQAQREAERIAAE 98
Cdd:pfam12128 309 ELSAADAAVAKDRSELEALEDQHGAFLDADIETAAADQEQLPSWQSELENLEERLKALTGKHQDVTAKYNRRRSKIKEQN 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 99 KAEAEHVEQQRIAAERLEAERLEQERIAAERLEAERLEQE-------RIAAERLEaERLEQE--RIAAEQAEAERLEQER 169
Cdd:pfam12128 389 NRDIAGIKDKLAKIREARDRQLAVAEDDLQALESELREQLeagklefNEEEYRLK-SRLGELklRLNQATATPELLLQLE 467
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 930309241 170 IAAERLEAERLEQERIAAEHAEAERLEQQRIAAEQAEAEHLEQERIAAEQ--AEAERLEQQ 228
Cdd:pfam12128 468 NFDERIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEErqSALDELELQ 528
|
|
| growth_prot_Scy |
NF041483 |
polarized growth protein Scy; |
16-228 |
8.89e-03 |
|
polarized growth protein Scy;
Pssm-ID: 469371 [Multi-domain] Cd Length: 1293 Bit Score: 39.04 E-value: 8.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 16 EAERIAAE---KAEAEHVEQERIAAEAR-DAERlaiadaelaAAEKAEQQRRDEAARLAEQQEAMLLQQEQQATEQAQrE 91
Cdd:NF041483 532 EAERLRAEaeeQAEEVRAAAERAARELReETER---------AIAARQAEAAEELTRLHTEAEERLTAAEEALADARA-E 601
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 92 AERIAAEKAEaehvEQQRIAAErlEAERLEQERIAAERlEAERLEQERIA---AERLEAERLEQERIAAEQAEAERLEQE 168
Cdd:NF041483 602 AERIRREAAE----ETERLRTE--AAERIRTLQAQAEQ-EAERLRTEAAAdasAARAEGENVAVRLRSEAAAEAERLKSE 674
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 930309241 169 -RIAAERLEAE-RLEQERIAAEHAEAERLEQQRIAAEQAEAEHLEQERIAAEQAEAERLEQQ 228
Cdd:NF041483 675 aQESADRVRAEaAAAAERVGTEAAEALAAAQEEAARRRREAEETLGSARAEADQERERAREQ 736
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
90-194 |
8.93e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 39.04 E-value: 8.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 90 REAERIAAEkAEAEHVEQQRIAA---ERLEAERLEQERIAAERLEAERLEQERIAAERLEAERLEQERIAAEQAEaERLE 166
Cdd:PRK00409 537 EEAEALLKE-AEKLKEELEEKKEklqEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQLQKGGYASVKAHELI-EARK 614
|
90 100
....*....|....*....|....*...
gi 930309241 167 QERIAAERLEAERLEQERIAAEHAEAER 194
Cdd:PRK00409 615 RLNKANEKKEKKKKKQKEKQEELKVGDE 642
|
|
| COG5001 |
COG5001 |
Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain ... |
60-314 |
8.94e-03 |
|
Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain [Signal transduction mechanisms];
Pssm-ID: 444025 [Multi-domain] Cd Length: 678 Bit Score: 38.99 E-value: 8.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 60 QQRRDEAARLAEQQEAMLLQQEQQATEQAQREAERIAAEKAEAEHVEQQRIAAERLEAERLEQERIAAERLEAERLEQER 139
Cdd:COG5001 4 LAALLLLLLALLLALLLLALLLLALLLAALLALALLLLLLLLLLALLLAALLLLALLALLALLLLAAALLALALAALLLA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 140 IAAERLEAERLEQERIAAEQAEAERLEQERIAAERLEAERLEQERIAAEHAEAERLEQQRIAAEQAEAEHLEQERIAAEQ 219
Cdd:COG5001 84 ALLAALLLLLLLLLALLVLLLLLLLLLALLALLAALLARALAALLLAAASAALLAAALGAALLAALALALLLALARALLA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930309241 220 AEAERLEQQRIAAEEAKAAEKPKKEGFFARLKKGLLKTRVNIGSGFASIFTGKKIDDELFEDLETQLLTADLGVDTTMKL 299
Cdd:COG5001 164 LLLLLLLALLLLLLLLLLLALLLLLLLALLLRLLLLLRGGRLLRLALRLLLGLLLLGLLLLLLLVAVLAIARLITERKRA 243
|
250 260
....*....|....*....|....
gi 930309241 300 ---------IDSLTDAANRKQLKD 314
Cdd:COG5001 244 eerlrhlayHDPLTGLPNRRLFLD 267
|
|
| APS_kinase |
pfam01583 |
Adenylylsulphate kinase; Enzyme that catalyzes the phosphorylation of adenylylsulphate to 3 ... |
344-385 |
9.44e-03 |
|
Adenylylsulphate kinase; Enzyme that catalyzes the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulfate. This domain contains an ATP binding P-loop motif.
Pssm-ID: 396247 [Multi-domain] Cd Length: 154 Bit Score: 36.91 E-value: 9.44e-03
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 930309241 344 KPFVILMVGVNGVGKTTTIGKLAKQFQDEGKSVMLAAGDTFR 385
Cdd:pfam01583 1 RGCTIWLTGLSGAGKSTIANALERKLFEQGRSVYVLDGDNVR 42
|
|
| |
