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Conserved domains on  [gi|944050009|gb|KQJ85647|]
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hypothetical protein BRADI_4g00800v3 [Brachypodium distachyon]

Protein Classification

Utp12 domain-containing protein( domain architecture ID 10512682)

Utp12 domain-containing protein similar to Schizosaccharomyces pombe uncharacterized protein C1450.03; lacks the WD repeats found at the N-terminus of other UTP5 family members such as Saccharomyces cerevisiae DIP2/UTP12

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Utp12 pfam04003
Dip2/Utp12 Family; This domain is found at the C-terminus of proteins containing WD40 repeats. ...
 84-185 2.52e-14

Dip2/Utp12 Family; This domain is found at the C-terminus of proteins containing WD40 repeats. These proteins are part of the U3 ribonucleoprotein the yeast protein is called Utp12 or DIP2.


:

Pssm-ID: 461125  Cd Length: 106  Bit Score: 66.80  E-value: 2.52e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944050009   84 DDRASLLSCLNNRDDKVIRKSISLLSPADAMKLLKSLILLMQSRGSVMVCLLPWLQALLSRHMSSIVSQESSLLLLNSLY 163
Cdd:pfam04003   1 NDEYLLESVLEKIPPSDIELTLLRLPFSYVLRLLKFLAERLAERSPHLELLLRWLKFLLRTHGGYLVSNPDLRPVLRSLQ 80

                          90       100
                  ....*....|....*....|...
gi 944050009  164 HLIDARTSTFASALEVST-CLDY 185
Cdd:pfam04003  81 KLLRRRLKELKDLLGLNLgALDY 103
DNA_pol_phi super family cl47903
DNA polymerase phi; This family includes the fifth essential DNA polymerase in yeast EC:2.7.7. ...
 192-238 4.77e-03

DNA polymerase phi; This family includes the fifth essential DNA polymerase in yeast EC:2.7.7.7. Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.


The actual alignment was detected with superfamily member pfam04931:

Pssm-ID: 461488  Cd Length: 765  Bit Score: 37.99  E-value: 4.77e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 944050009  192 DDEPGEEEEtapivyEDKDTDEEESEVDDAMETDDKETDEEESEVDD 238
Cdd:pfam04931 642 DEEDDDEEE------DDDDEDDEDSEEDDDEDDDDEDEEDDDDEDVD 682
 
Name Accession Description Interval E-value
Utp12 pfam04003
Dip2/Utp12 Family; This domain is found at the C-terminus of proteins containing WD40 repeats. ...
 84-185 2.52e-14

Dip2/Utp12 Family; This domain is found at the C-terminus of proteins containing WD40 repeats. These proteins are part of the U3 ribonucleoprotein the yeast protein is called Utp12 or DIP2.


Pssm-ID: 461125  Cd Length: 106  Bit Score: 66.80  E-value: 2.52e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944050009   84 DDRASLLSCLNNRDDKVIRKSISLLSPADAMKLLKSLILLMQSRGSVMVCLLPWLQALLSRHMSSIVSQESSLLLLNSLY 163
Cdd:pfam04003   1 NDEYLLESVLEKIPPSDIELTLLRLPFSYVLRLLKFLAERLAERSPHLELLLRWLKFLLRTHGGYLVSNPDLRPVLRSLQ 80

                          90       100
                  ....*....|....*....|...
gi 944050009  164 HLIDARTSTFASALEVST-CLDY 185
Cdd:pfam04003  81 KLLRRRLKELKDLLGLNLgALDY 103
DNA_pol_phi pfam04931
DNA polymerase phi; This family includes the fifth essential DNA polymerase in yeast EC:2.7.7. ...
 192-238 4.77e-03

DNA polymerase phi; This family includes the fifth essential DNA polymerase in yeast EC:2.7.7.7. Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.


Pssm-ID: 461488  Cd Length: 765  Bit Score: 37.99  E-value: 4.77e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 944050009  192 DDEPGEEEEtapivyEDKDTDEEESEVDDAMETDDKETDEEESEVDD 238
Cdd:pfam04931 642 DEEDDDEEE------DDDDEDDEDSEEDDDEDDDDEDEEDDDDEDVD 682
PTZ00415 PTZ00415
transmission-blocking target antigen s230; Provisional
 197-239 4.88e-03

transmission-blocking target antigen s230; Provisional


Pssm-ID: 185603 [Multi-domain]  Cd Length: 2849  Bit Score: 38.11  E-value: 4.88e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 944050009  197 EEEETAPIVYEDKDTDEEESEVDDAMETDDKETDEEESEVDDM 239
Cdd:PTZ00415  141 AEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGF 183
 
Name Accession Description Interval E-value
Utp12 pfam04003
Dip2/Utp12 Family; This domain is found at the C-terminus of proteins containing WD40 repeats. ...
 84-185 2.52e-14

Dip2/Utp12 Family; This domain is found at the C-terminus of proteins containing WD40 repeats. These proteins are part of the U3 ribonucleoprotein the yeast protein is called Utp12 or DIP2.


Pssm-ID: 461125  Cd Length: 106  Bit Score: 66.80  E-value: 2.52e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944050009   84 DDRASLLSCLNNRDDKVIRKSISLLSPADAMKLLKSLILLMQSRGSVMVCLLPWLQALLSRHMSSIVSQESSLLLLNSLY 163
Cdd:pfam04003   1 NDEYLLESVLEKIPPSDIELTLLRLPFSYVLRLLKFLAERLAERSPHLELLLRWLKFLLRTHGGYLVSNPDLRPVLRSLQ 80

                          90       100
                  ....*....|....*....|...
gi 944050009  164 HLIDARTSTFASALEVST-CLDY 185
Cdd:pfam04003  81 KLLRRRLKELKDLLGLNLgALDY 103
DNA_pol_phi pfam04931
DNA polymerase phi; This family includes the fifth essential DNA polymerase in yeast EC:2.7.7. ...
 192-238 4.77e-03

DNA polymerase phi; This family includes the fifth essential DNA polymerase in yeast EC:2.7.7.7. Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.


Pssm-ID: 461488  Cd Length: 765  Bit Score: 37.99  E-value: 4.77e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 944050009  192 DDEPGEEEEtapivyEDKDTDEEESEVDDAMETDDKETDEEESEVDD 238
Cdd:pfam04931 642 DEEDDDEEE------DDDDEDDEDSEEDDDEDDDDEDEEDDDDEDVD 682
PTZ00415 PTZ00415
transmission-blocking target antigen s230; Provisional
 197-239 4.88e-03

transmission-blocking target antigen s230; Provisional


Pssm-ID: 185603 [Multi-domain]  Cd Length: 2849  Bit Score: 38.11  E-value: 4.88e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 944050009  197 EEEETAPIVYEDKDTDEEESEVDDAMETDDKETDEEESEVDDM 239
Cdd:PTZ00415  141 AEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGF 183
Nup188 pfam10487
Nucleoporin subcomplex protein binding to Pom34; This is one of the many peptides that make up ...
 84-120 9.72e-03

Nucleoporin subcomplex protein binding to Pom34; This is one of the many peptides that make up the nucleoporin complex (NPC), and is found across eukaryotes. The Nup188 subcomplex (Nic96p-Nup188p-Nup192p-Pom152p) is one of at least six that make up the NPC, and as such is symmetrically localized on both faces of the NPC at the nuclear end, being integrally bound to the C-terminus of Pom34p.


Pssm-ID: 463110  Cd Length: 925  Bit Score: 36.88  E-value: 9.72e-03
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 944050009   84 DDRASLLSCLNNRDDKVIRKSIS--LLSPADAMKLLKSL 120
Cdd:pfam10487 863 DEYPSLLSHLGRDHSQVLLHSLLsdLDNPIDDYKLKISL 901
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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