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Conserved domains on  [gi|951629017|gb|KRT36491|]
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hypothetical protein HMPREF1705_03772 [Acetomicrobium hydrogeniformans ATCC BAA-1850]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG4625 super family cl34793
Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function ...
 28-76 6.50e-07

Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function unknown];


The actual alignment was detected with superfamily member COG4625:

Pssm-ID: 443664 [Multi-domain]  Cd Length: 900  Bit Score: 44.77  E-value: 6.50e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 951629017  28 TEELDDDYFVADLGMTLYSAGNFDMSLSYNGRFGDDTDSHGGRLRLEWK 76
Cdd:COG4625  851 GAPLARDALVLGAGLSARLSDGLSLGLGYDGEFGSGYTDHGGSAGLRYR 899
 
Name Accession Description Interval E-value
COG4625 COG4625
Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function ...
 28-76 6.50e-07

Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function unknown];


Pssm-ID: 443664 [Multi-domain]  Cd Length: 900  Bit Score: 44.77  E-value: 6.50e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 951629017  28 TEELDDDYFVADLGMTLYSAGNFDMSLSYNGRFGDDTDSHGGRLRLEWK 76
Cdd:COG4625  851 GAPLARDALVLGAGLSARLSDGLSLGLGYDGEFGSGYTDHGGSAGLRYR 899
 
Name Accession Description Interval E-value
COG4625 COG4625
Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function ...
 28-76 6.50e-07

Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function unknown];


Pssm-ID: 443664 [Multi-domain]  Cd Length: 900  Bit Score: 44.77  E-value: 6.50e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 951629017  28 TEELDDDYFVADLGMTLYSAGNFDMSLSYNGRFGDDTDSHGGRLRLEWK 76
Cdd:COG4625  851 GAPLARDALVLGAGLSARLSDGLSLGLGYDGEFGSGYTDHGGSAGLRYR 899
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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