|
Name |
Accession |
Description |
Interval |
E-value |
| GlpR |
COG1349 |
DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, ... |
1-250 |
6.33e-84 |
|
DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, Carbohydrate transport and metabolism];
Pssm-ID: 440960 [Multi-domain] Cd Length: 254 Bit Score: 251.21 E-value: 6.33e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973109795 1 MSKAERLEKILDLIQNSNFISPVELAEKMNVSLVTIRRDLKKLADQRSIIKEYN--TIKMARDYDKRFHERHNTNLEQKR 78
Cdd:COG1349 1 MLAEERRQKILELLRERGRVSVEELAERLGVSEETIRRDLAELEEQGLLRRVHGgaVLVSSAAAEPPFAERETLNAEEKR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973109795 79 IIAELAKKFVQSGDTIFLDTSTTCYEFARTLAlSAQNLHIITNNIYMAVELMSIYKIDLVLVGGNIRHGYFSTIGPLAEK 158
Cdd:COG1349 81 AIARAAASLIEDGDTIFLDAGTTTLALARALP-DRRNLTVVTNSLNIANELAERPNIEVILLGGELRPSSGSLVGPLAEE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973109795 159 MLSNIKVTKFFFSCTMLD-TRGIYESNVLEGNIKVKMFENSRLHYLLVDSSKFDKASIFRTTGIENVDAIITDKPLPNEY 237
Cdd:COG1349 160 ALRRFRADKAFLGASGIDaEGGLTTFDEEEAEVKRAMIEAARRVILLADSSKFGRRALARVAPLSEIDVLITDAGPPPEL 239
|
250
....*....|...
gi 973109795 238 LDILKDKNVEVIT 250
Cdd:COG1349 240 LEALEEAGVEVIV 252
|
|
| DeoRC |
pfam00455 |
DeoR C terminal sensor domain; The sensor domains of the DeoR are catalytically inactive ... |
72-231 |
7.41e-52 |
|
DeoR C terminal sensor domain; The sensor domains of the DeoR are catalytically inactive versions of the ISOCOT fold, but retain the substrate binding site. DeorC senses diverse sugar derivatives such as deoxyribose nucleoside (DeoR), tagatose phosphate (LacR), galactosamine (AgaR), myo-inositol (Bacillus IolR) and L-ascorbate (UlaR). It can also bind L-ascorbate 6-phosphate, agrocinopines, sn-glycerol 3-phosphate, and sulfoquinovose (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 395365 Cd Length: 160 Bit Score: 166.15 E-value: 7.41e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973109795 72 TNLEQKRIIAELAKKFVQSGDTIFLDTSTTCYEFARTLAlSAQNLHIITNNIYMAVELMSIYKIDLVLVGGNIRHGYFST 151
Cdd:pfam00455 1 ENAEEKRRIAKAAASLIEDGDTIFLDAGTTTLELARALP-DRRNLTVITNSLNIANELSEKPDIEVILLGGEVRPKTGAF 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973109795 152 IGPLAEKMLSNIKVTKFFFSCTMLDT-RGIYESNVLEGNIKVKMFENSRLHYLLVDSSKFDKASIFRTTGIENVDAIITD 230
Cdd:pfam00455 80 VGPLAEEFLRQFNVDKAFIGANGIDLeGGLTTSDEEEAEVKRAMIEAARRVILLADSSKFGKRAFARFAPLEDIDALITD 159
|
.
gi 973109795 231 K 231
Cdd:pfam00455 160 K 160
|
|
| AgaR |
NF040755 |
transcriptional repressor AgaR; |
1-249 |
3.64e-37 |
|
transcriptional repressor AgaR;
Pssm-ID: 468715 [Multi-domain] Cd Length: 256 Bit Score: 131.62 E-value: 3.64e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973109795 1 MSKAERLEKILDLIQNSNFISPVELAEKMNVSLVTIRRDLKKLADQ----RS----IIKEYNTIKMARD-YDKRfheRHN 71
Cdd:NF040755 2 KGTSERREQIIQRLRQQGSVQVEDLSALFGVSTVTIRNDLAFLEKQgiavRAyggaLINDGFIPGAEPSvEDKS---RLN 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973109795 72 TNLeqKRIIAELAKKFVQSGDTIFLDTSTTCYEFARTLAlSAQNLHIITNNIYMAVELMSIYKIDLVLVGGNIRHGYFST 151
Cdd:NF040755 79 TAV--KRLIAAAAAELIKPGDRVILDSGTTTYEIARHLK-QHQDVVVMTNGLNVANELLEAEGVEVLMTGGHLRRQSLSF 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973109795 152 IGPLAEKMLSNIKVTKFFFSCTMLDT-RGIYESNVLEGNIKVKMFENSRLHYLLVDSSKFDKASIFRTTGIENVDAIITD 230
Cdd:NF040755 156 YGDQAEQSLQNYHFDKLFLGVDGFDLeRGITTHNEDEARLNRRMCEVAERIIAVTDSSKFGRSSLHKIRDTGRIDTLITD 235
|
250
....*....|....*....
gi 973109795 231 KPLPNEYLDILKDKNVEVI 249
Cdd:NF040755 236 SGIPEEYLQGLRKLGVEVI 254
|
|
| PRK10411 |
PRK10411 |
L-fucose operon activator; |
3-232 |
1.23e-31 |
|
L-fucose operon activator;
Pssm-ID: 236684 [Multi-domain] Cd Length: 240 Bit Score: 116.83 E-value: 1.23e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973109795 3 KAERLEKILDLIQNSNFISPVELAEKMNVSLVTIRRDLKKLADQRSIIKEYNTIKM----ARDYDKRFHERHNTNLEQKR 78
Cdd:PRK10411 2 KAARQQAIVDLLLNHTSLTTEALAEQLNVSKETIRRDLNELQTQGKILRNHGRAKYihrqNQDSGDPFHIRLKSHYAHKA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973109795 79 IIAELAKKFVQSGDTIFLDTSTTCYEFARTlaLSAQNLHIITNNIYMAVELMSIYKIDLVLVGGNIRHGYFSTIGPLAEK 158
Cdd:PRK10411 82 DIAREALAWIEEGMVIALDASSTCWYLARQ--LPDINIQVFTNSHPICQELGKRERIQLISSGGTLERKYGCYVNPSLIS 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 973109795 159 MLSNIKVTKFFFSCTMLDTRG-IYESNVLEGNIKVKMFENSRLHYLLVDSSKFDKASIFRTTGIENVDAIITDKP 232
Cdd:PRK10411 160 QLKSLEIDLFIFSCEGIDSSGaLWDSNAINADYKSMLLKRAAQSLLLIDKSKFNRSGEARIGHLDEVTHIISDER 234
|
|
| HTH_DEOR |
smart00420 |
helix_turn_helix, Deoxyribose operon repressor; |
6-54 |
1.42e-08 |
|
helix_turn_helix, Deoxyribose operon repressor;
Pssm-ID: 197714 [Multi-domain] Cd Length: 53 Bit Score: 49.91 E-value: 1.42e-08
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 973109795 6 RLEKILDLIQNSNFISPVELAEKMNVSLVTIRRDLKKLADQRSIIKEYN 54
Cdd:smart00420 1 RQQQILELLAQQGKVSVEELAELLGVSEMTIRRDLNKLEEQGLLTRVHG 49
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| GlpR |
COG1349 |
DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, ... |
1-250 |
6.33e-84 |
|
DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, Carbohydrate transport and metabolism];
Pssm-ID: 440960 [Multi-domain] Cd Length: 254 Bit Score: 251.21 E-value: 6.33e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973109795 1 MSKAERLEKILDLIQNSNFISPVELAEKMNVSLVTIRRDLKKLADQRSIIKEYN--TIKMARDYDKRFHERHNTNLEQKR 78
Cdd:COG1349 1 MLAEERRQKILELLRERGRVSVEELAERLGVSEETIRRDLAELEEQGLLRRVHGgaVLVSSAAAEPPFAERETLNAEEKR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973109795 79 IIAELAKKFVQSGDTIFLDTSTTCYEFARTLAlSAQNLHIITNNIYMAVELMSIYKIDLVLVGGNIRHGYFSTIGPLAEK 158
Cdd:COG1349 81 AIARAAASLIEDGDTIFLDAGTTTLALARALP-DRRNLTVVTNSLNIANELAERPNIEVILLGGELRPSSGSLVGPLAEE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973109795 159 MLSNIKVTKFFFSCTMLD-TRGIYESNVLEGNIKVKMFENSRLHYLLVDSSKFDKASIFRTTGIENVDAIITDKPLPNEY 237
Cdd:COG1349 160 ALRRFRADKAFLGASGIDaEGGLTTFDEEEAEVKRAMIEAARRVILLADSSKFGRRALARVAPLSEIDVLITDAGPPPEL 239
|
250
....*....|...
gi 973109795 238 LDILKDKNVEVIT 250
Cdd:COG1349 240 LEALEEAGVEVIV 252
|
|
| DeoRC |
pfam00455 |
DeoR C terminal sensor domain; The sensor domains of the DeoR are catalytically inactive ... |
72-231 |
7.41e-52 |
|
DeoR C terminal sensor domain; The sensor domains of the DeoR are catalytically inactive versions of the ISOCOT fold, but retain the substrate binding site. DeorC senses diverse sugar derivatives such as deoxyribose nucleoside (DeoR), tagatose phosphate (LacR), galactosamine (AgaR), myo-inositol (Bacillus IolR) and L-ascorbate (UlaR). It can also bind L-ascorbate 6-phosphate, agrocinopines, sn-glycerol 3-phosphate, and sulfoquinovose (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 395365 Cd Length: 160 Bit Score: 166.15 E-value: 7.41e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973109795 72 TNLEQKRIIAELAKKFVQSGDTIFLDTSTTCYEFARTLAlSAQNLHIITNNIYMAVELMSIYKIDLVLVGGNIRHGYFST 151
Cdd:pfam00455 1 ENAEEKRRIAKAAASLIEDGDTIFLDAGTTTLELARALP-DRRNLTVITNSLNIANELSEKPDIEVILLGGEVRPKTGAF 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973109795 152 IGPLAEKMLSNIKVTKFFFSCTMLDT-RGIYESNVLEGNIKVKMFENSRLHYLLVDSSKFDKASIFRTTGIENVDAIITD 230
Cdd:pfam00455 80 VGPLAEEFLRQFNVDKAFIGANGIDLeGGLTTSDEEEAEVKRAMIEAARRVILLADSSKFGKRAFARFAPLEDIDALITD 159
|
.
gi 973109795 231 K 231
Cdd:pfam00455 160 K 160
|
|
| AgaR |
NF040755 |
transcriptional repressor AgaR; |
1-249 |
3.64e-37 |
|
transcriptional repressor AgaR;
Pssm-ID: 468715 [Multi-domain] Cd Length: 256 Bit Score: 131.62 E-value: 3.64e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973109795 1 MSKAERLEKILDLIQNSNFISPVELAEKMNVSLVTIRRDLKKLADQ----RS----IIKEYNTIKMARD-YDKRfheRHN 71
Cdd:NF040755 2 KGTSERREQIIQRLRQQGSVQVEDLSALFGVSTVTIRNDLAFLEKQgiavRAyggaLINDGFIPGAEPSvEDKS---RLN 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973109795 72 TNLeqKRIIAELAKKFVQSGDTIFLDTSTTCYEFARTLAlSAQNLHIITNNIYMAVELMSIYKIDLVLVGGNIRHGYFST 151
Cdd:NF040755 79 TAV--KRLIAAAAAELIKPGDRVILDSGTTTYEIARHLK-QHQDVVVMTNGLNVANELLEAEGVEVLMTGGHLRRQSLSF 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973109795 152 IGPLAEKMLSNIKVTKFFFSCTMLDT-RGIYESNVLEGNIKVKMFENSRLHYLLVDSSKFDKASIFRTTGIENVDAIITD 230
Cdd:NF040755 156 YGDQAEQSLQNYHFDKLFLGVDGFDLeRGITTHNEDEARLNRRMCEVAERIIAVTDSSKFGRSSLHKIRDTGRIDTLITD 235
|
250
....*....|....*....
gi 973109795 231 KPLPNEYLDILKDKNVEVI 249
Cdd:NF040755 236 SGIPEEYLQGLRKLGVEVI 254
|
|
| PRK10411 |
PRK10411 |
L-fucose operon activator; |
3-232 |
1.23e-31 |
|
L-fucose operon activator;
Pssm-ID: 236684 [Multi-domain] Cd Length: 240 Bit Score: 116.83 E-value: 1.23e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973109795 3 KAERLEKILDLIQNSNFISPVELAEKMNVSLVTIRRDLKKLADQRSIIKEYNTIKM----ARDYDKRFHERHNTNLEQKR 78
Cdd:PRK10411 2 KAARQQAIVDLLLNHTSLTTEALAEQLNVSKETIRRDLNELQTQGKILRNHGRAKYihrqNQDSGDPFHIRLKSHYAHKA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973109795 79 IIAELAKKFVQSGDTIFLDTSTTCYEFARTlaLSAQNLHIITNNIYMAVELMSIYKIDLVLVGGNIRHGYFSTIGPLAEK 158
Cdd:PRK10411 82 DIAREALAWIEEGMVIALDASSTCWYLARQ--LPDINIQVFTNSHPICQELGKRERIQLISSGGTLERKYGCYVNPSLIS 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 973109795 159 MLSNIKVTKFFFSCTMLDTRG-IYESNVLEGNIKVKMFENSRLHYLLVDSSKFDKASIFRTTGIENVDAIITDKP 232
Cdd:PRK10411 160 QLKSLEIDLFIFSCEGIDSSGaLWDSNAINADYKSMLLKRAAQSLLLIDKSKFNRSGEARIGHLDEVTHIISDER 234
|
|
| PRK09802 |
PRK09802 |
DeoR family transcriptional regulator; |
4-249 |
2.50e-29 |
|
DeoR family transcriptional regulator;
Pssm-ID: 182086 [Multi-domain] Cd Length: 269 Bit Score: 111.49 E-value: 2.50e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973109795 4 AERLEKILDLIQNSNFISPVELAEKMNVSLVTIRRDLKKLADQRSIIKEY--------NTIKMARDydkrFHERHNTNLE 75
Cdd:PRK09802 16 SERREQIIQRLRQQGSVQVNDLSALYGVSTVTIRNDLAFLEKQGIAVRAYggalicdsTTPSVEPS----VEDKSALNTA 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973109795 76 QKRIIAELAKKFVQSGDTIFLDTSTTCYEFARTLAlSAQNLHIITNNIYMAVELMSIYKIDLVLVGGNIRHGYFSTIGPL 155
Cdd:PRK09802 92 MKRSVAKAAVELIQPGHRVILDSGTTTFEIARLMR-KHTDVIAMTNGMNVANALLEAEGVELLMTGGHLRRQSQSFYGDQ 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973109795 156 AEKMLSNIKVTKFFFSCTMLD-TRGIYESNVLEGNIKVKMFENSRLHYLLVDSSKFDKASIFRTTGIENVDAIITDKPLP 234
Cdd:PRK09802 171 AEQSLQNYHFDMLFLGVDAIDlERGVSTHNEDEARLNRRMCEVAERIIVVTDSSKFNRSSLHKIIDTQRIDMIIVDEGIP 250
|
250
....*....|....*
gi 973109795 235 NEYLDILKDKNVEVI 249
Cdd:PRK09802 251 ADSLEGLRKAGVEVI 265
|
|
| PRK10906 |
PRK10906 |
DeoR/GlpR family transcriptional regulator; |
1-248 |
2.83e-28 |
|
DeoR/GlpR family transcriptional regulator;
Pssm-ID: 182827 [Multi-domain] Cd Length: 252 Bit Score: 108.02 E-value: 2.83e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973109795 1 MSKAERLEKILDLIQNSNFISPVELAEKMNVSLVTIRRDLKKLADQRSIIKEYNTIKM-ARDYDKRFHERHNTNLEQKRI 79
Cdd:PRK10906 1 MKQTQRHDAIIELVKQQGYVSTEELVEHFSVSPQTIRRDLNDLAEQNKILRHHGGAALpSSSVNTPWHDRKATQTEEKER 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973109795 80 IAELAKKFVQSGDTIFLDTSTTCYEFARTLaLSAQNLHIITNNIYMAVELMSIYKIDLVLVGGNIRHGYFSTIGPLAEKM 159
Cdd:PRK10906 81 IARKVASQIPNGATLFIDIGTTPEAVAHAL-LNHSNLRIVTNNLNVANTLMAKEDFRIILAGGELRSRDGGIIGEATLDF 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973109795 160 LSNIKVTKFFFSCTMLDTRG-IYESNVLEGNIKVKMFENSRLHYLLVDSSKFDKASIFRTTGIENVDAIITDKPLPNEYL 238
Cdd:PRK10906 160 ISQFRLDFGILGISGIDSDGsLLEFDYHEVRTKRAIIENSRHVMLVVDHSKFGRNAMVNMGSISMVDAVYTDQLPPASVM 239
|
250
....*....|
gi 973109795 239 DILKDKNVEV 248
Cdd:PRK10906 240 QVIEDHHVQL 249
|
|
| PRK13509 |
PRK13509 |
HTH-type transcriptional regulator UlaR; |
1-249 |
6.39e-28 |
|
HTH-type transcriptional regulator UlaR;
Pssm-ID: 184100 [Multi-domain] Cd Length: 251 Bit Score: 107.01 E-value: 6.39e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973109795 1 MSKAERLEKILDLIQNSNFISPVELAEKMNVSLVTIRRDLKKLADQRSIIKEYN---TIKMARDYDKRFHERHNTNLEQK 77
Cdd:PRK13509 1 MTEAQRHQILLELLAQLGFVTVEKVIERLGISPATARRDINKLDESGKLKKVRNgaeAITQQRPRWTPMNIHQAQNHDEK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973109795 78 RIIAELAKKFVQSGDTIFLDTSTTCYEFARTLAlsAQNLHIITNNIYMAVELMSIYKIDLVLVGGNIRHGYFSTIGPlAE 157
Cdd:PRK13509 81 VRIAKAASQLCNPGESVVINCGSTAFLLGRELC--GKPVQIITNYLPLANYLIDQEHDSVIIMGGQYNKSQSITLSP-QG 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973109795 158 KMLSNIKVTKFFFSCTMLDTRGIYESNVLEGNIKVKMFENSRLHYLLVDSSKFDKAS--IFRTTgiENVDAIITDKPLPN 235
Cdd:PRK13509 158 SENSLYAGHWMFTSGKGLTADGLYKTDMLTAMAEQKMLSVVGKLVVLVDSSKIGERAgmLFSRA--DQIDMLITGKNADP 235
|
250
....*....|....
gi 973109795 236 EYLDILKDKNVEVI 249
Cdd:PRK13509 236 EVLQQLEAQGVSIL 249
|
|
| srlR |
PRK10434 |
DNA-binding transcriptional repressor; |
1-254 |
9.71e-27 |
|
DNA-binding transcriptional repressor;
Pssm-ID: 182457 [Multi-domain] Cd Length: 256 Bit Score: 104.38 E-value: 9.71e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973109795 1 MSKAERLEKILDLIQNSNFISPVELAEKMNVSLVTIRRDLKKLADQRSIIKEYNTIKMARD-YDKRFHERHNTNLEQKRI 79
Cdd:PRK10434 1 MKPRQRQAAILEYLQKQGKTSVEELAQYFDTTGTTIRKDLVILEHAGTVIRTYGGVVLNKEeSDPPIDHKTLINTHKKEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973109795 80 IAELAKKFVQSGDTIFLDTSTTCYEFARTLAlSAQNLHIITNNIYMAVELMSIYK-IDLVLVGGNIRHGYFSTIGPLAEK 158
Cdd:PRK10434 81 IAEAAVSLIHDGDSIILDAGSTVLQMVPLLS-RFNNITVMTNSLHIVNALSELDNeQTILMPGGTFRKKSASFHGQLAEN 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973109795 159 MLSNIKVTKFFFSCTMLD-TRGIYESNVLEGNIKVkMFENSRLHYLLVDSSKFDKASIFRTTGIENVDAIITDKPLPNEY 237
Cdd:PRK10434 160 AFEHFTFDKLFIGTDGIDlNAGVTTFNEVYTVSKA-MCNAAREIILMADSSKFGRKSPNVVCSLEKVDKLITDAGIDPAF 238
|
250
....*....|....*...
gi 973109795 238 LDILKDKNVEVI-TPKNN 254
Cdd:PRK10434 239 RQALEEKGIEVIiTGESN 256
|
|
| PRK10681 |
PRK10681 |
DNA-binding transcriptional repressor DeoR; Provisional |
1-250 |
1.75e-14 |
|
DNA-binding transcriptional repressor DeoR; Provisional
Pssm-ID: 182644 [Multi-domain] Cd Length: 252 Bit Score: 70.88 E-value: 1.75e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973109795 1 MSKAERLEKILDLIQNSNFISPVELAEKMNVSLVTIRRDLKklADQRSIIKEYNTIKMA-RDYDKRFHERHNTNL-EQKR 78
Cdd:PRK10681 3 TRRDERIGQLLQALKRSDKLHLKDAAALLGVSEMTIRRDLN--AHSAPVVLLGGYIVLEpRSASHYLLSDQKSRLvEEKR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973109795 79 IIAELAKKFVQSGDTIFLDTSTT-----------------CYEFARTLALSAQ-NLHIItnniymavelmsiykidlvLV 140
Cdd:PRK10681 81 RAAQLAATLVEPNQTLFFDCGTTtpwiieaidnelpftavCYSLNTFLALQEKpHCRAI-------------------LC 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973109795 141 GGNIrHGYFSTIGPLA-EKMLSNIKVTKFFFSCTMLDTR-GIYESNVLEGNIKVKMFENSRLHYLLVDSSKFDKASIFRT 218
Cdd:PRK10681 142 GGEF-HASNAIFKPLDfQQTLDNICPDIAFYSAAGVHVSkGATCFNLEELPVKHWAMAMAQKHVLVVDHSKFGKVRPARM 220
|
250 260 270
....*....|....*....|....*....|..
gi 973109795 219 TGIENVDAIITDKPLPNEYLDILKDKNVEVIT 250
Cdd:PRK10681 221 GDLTRFDTVVSDRCPDDEFVKYAQAQRIKLMY 252
|
|
| HTH_DEOR |
smart00420 |
helix_turn_helix, Deoxyribose operon repressor; |
6-54 |
1.42e-08 |
|
helix_turn_helix, Deoxyribose operon repressor;
Pssm-ID: 197714 [Multi-domain] Cd Length: 53 Bit Score: 49.91 E-value: 1.42e-08
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 973109795 6 RLEKILDLIQNSNFISPVELAEKMNVSLVTIRRDLKKLADQRSIIKEYN 54
Cdd:smart00420 1 RQQQILELLAQQGKVSVEELAELLGVSEMTIRRDLNKLEEQGLLTRVHG 49
|
|
| HTH_DeoR |
pfam08220 |
DeoR-like helix-turn-helix domain; |
6-54 |
3.57e-08 |
|
DeoR-like helix-turn-helix domain;
Pssm-ID: 285436 [Multi-domain] Cd Length: 57 Bit Score: 48.80 E-value: 3.57e-08
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 973109795 6 RLEKILDLIQNSNFISPVELAEKMNVSLVTIRRDLKKLADQRSIIKEYN 54
Cdd:pfam08220 1 RIQQILELLKQQGTLSVEELAELLGVSEMTIRRDLNELEEQGLLTRTHG 49
|
|
| YobV |
COG2378 |
Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains ... |
1-46 |
4.16e-08 |
|
Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains [Transcription];
Pssm-ID: 441945 [Multi-domain] Cd Length: 314 Bit Score: 53.16 E-value: 4.16e-08
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 973109795 1 MSKAERLEKILDLIQNSNFISPVELAEKMNVSLVTIRRDLKKLADQ 46
Cdd:COG2378 1 MSRLERLLALLQLLQSRRGVTAAELAERLEVSERTIYRDIDALREL 46
|
|
| HTH_11 |
pfam08279 |
HTH domain; This family includes helix-turn-helix domains in a wide variety of proteins. |
8-43 |
5.67e-05 |
|
HTH domain; This family includes helix-turn-helix domains in a wide variety of proteins.
Pssm-ID: 429896 [Multi-domain] Cd Length: 52 Bit Score: 39.72 E-value: 5.67e-05
10 20 30
....*....|....*....|....*....|....*..
gi 973109795 8 EKILD-LIQNSNFISPVELAEKMNVSLVTIRRDLKKL 43
Cdd:pfam08279 1 LQILQlLLEARGPISGQELAEKLGVSRRTIRRDIKIL 37
|
|
| ArgR |
COG1438 |
Arginine repressor [Transcription]; |
1-43 |
2.36e-04 |
|
Arginine repressor [Transcription];
Pssm-ID: 441047 Cd Length: 152 Bit Score: 40.50 E-value: 2.36e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 973109795 1 MSKAERLEKILDLIQNSNFISPVELAEK-----MNVSLVTIRRDLKKL 43
Cdd:COG1438 1 MKKAARQAKIKEIISEEEIETQEELVELlkeegFNVTQATVSRDLKEL 48
|
|
| PRK04424 |
PRK04424 |
transcription factor FapR; |
1-39 |
4.50e-04 |
|
transcription factor FapR;
Pssm-ID: 179847 [Multi-domain] Cd Length: 185 Bit Score: 40.19 E-value: 4.50e-04
10 20 30
....*....|....*....|....*....|....*....
gi 973109795 1 MSKAERLEKILDLIQNSNFISPVELAEKMNVSLVTIRRD 39
Cdd:PRK04424 3 LSKKERQKALQELIEENPFITDEELAEKFGVSIQTIRLD 41
|
|
| MntR |
COG1321 |
Mn-dependent transcriptional regulator MntR, DtxR family [Transcription]; |
7-46 |
5.77e-04 |
|
Mn-dependent transcriptional regulator MntR, DtxR family [Transcription];
Pssm-ID: 440932 [Multi-domain] Cd Length: 135 Bit Score: 39.03 E-value: 5.77e-04
10 20 30 40
....*....|....*....|....*....|....*....|
gi 973109795 7 LEKILDLIQNSNFISPVELAEKMNVSLVTIRRDLKKLADQ 46
Cdd:COG1321 12 LKAIYELSEEGGPVRTSDIAERLGVSPPSVTEMLKKLEEK 51
|
|
| RPS25 |
COG4901 |
Ribosomal protein S25e [Translation, ribosomal structure and biogenesis]; Ribosomal protein ... |
4-53 |
8.82e-04 |
|
Ribosomal protein S25e [Translation, ribosomal structure and biogenesis]; Ribosomal protein S25e is part of the Pathway/BioSystem: Archaeal ribosomal proteins
Pssm-ID: 443929 Cd Length: 108 Bit Score: 38.12 E-value: 8.82e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 973109795 4 AERLEKILDLIQNSNFISPVELAEKMNVSLVTIRRDLKKLAdQRSIIKEY 53
Cdd:COG4901 47 EELLKRVEKEIKKEKYVTPYTLAQKYNVKISVAKKILRELE-KRGLLKLV 95
|
|
| NiaR |
COG1827 |
Transcriptional regulator of NAD metabolism, contains HTH and 3H domains [Transcription, ... |
1-32 |
2.79e-03 |
|
Transcriptional regulator of NAD metabolism, contains HTH and 3H domains [Transcription, Coenzyme transport and metabolism];
Pssm-ID: 441432 [Multi-domain] Cd Length: 171 Bit Score: 37.42 E-value: 2.79e-03
10 20 30
....*....|....*....|....*....|....*
gi 973109795 1 MSKAERLEKILDLIQNSNfiSPV---ELAEKMNVS 32
Cdd:COG1827 1 MDGEERREKILEILKESK--EPIsgsELAKKFGVS 33
|
|
| HTH_ASNC |
smart00344 |
helix_turn_helix ASNC type; AsnC: an autogenously regulated activator of asparagine synthetase ... |
9-56 |
4.55e-03 |
|
helix_turn_helix ASNC type; AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli)
Pssm-ID: 214628 [Multi-domain] Cd Length: 108 Bit Score: 35.95 E-value: 4.55e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 973109795 9 KILDLIQNSNFISPVELAEKMNVSLVTIRRDLKKLADQrSIIKEYNTI 56
Cdd:smart00344 7 KILEELQKDARISLAELAKKVGLSPSTVHNRVKRLEEE-GVIKGYTAV 53
|
|
| Fe_dep_repress |
pfam01325 |
Iron dependent repressor, N-terminal DNA binding domain; This family includes the Diphtheria ... |
2-46 |
5.25e-03 |
|
Iron dependent repressor, N-terminal DNA binding domain; This family includes the Diphtheria toxin repressor. DNA binding is through a helix-turn-helix motif.
Pssm-ID: 396062 [Multi-domain] Cd Length: 57 Bit Score: 34.27 E-value: 5.25e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 973109795 2 SKAERLEKILDLIQNSNFISPVELAEKMNVSLVTIRRDLKKLADQ 46
Cdd:pfam01325 2 STEDYLETIYTLSEEKGVVKTKDLAERLNVSPSTVSEMLKKLEKM 46
|
|
| |
