|
Name |
Accession |
Description |
Interval |
E-value |
| PBP1_ABC_HAAT-like |
cd06348 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
46-402 |
2.36e-136 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380571 [Multi-domain] Cd Length: 342 Bit Score: 393.52 E-value: 2.36e-136
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 46 KIGVLTSLTGKGTDWGKKQKVALEMVEQETNASGGINGSPVKFVIYDTGGENQQAVILTRKLASEDKVLAILGPYFSGEC 125
Cdd:cd06348 1 KIGVALSLTGPGALYGQSQKNGAQLAVEEINAAGGVGGVKIELIVEDTAGDPEQAINAFQKLINQDKVLAILGPTLSSEA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 126 EVAFPQGNELKIPIISATSAKPGISAAnRPWAFRNTMTDDKMIKVGLPIFLKKYPVQNTALVADLKDAvSTSFANGTLPS 205
Cdd:cd06348 81 FAADPIAQQAKVPVVGISNTAPGITDI-GPYIFRNSLPEDKVIPPTVKAAKKKYGIKKVAVLYDQDDA-FTVSGTKVFPA 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 206 AMKGisglSILNDGKSITYNTGDTDFSAQVTTLKQLGPQALGIGGLYQEIASLAQEMKRQGLSIPALGNVGMYSDDLIKQ 285
Cdd:cd06348 159 ALKK----NGVEVLDTETFQTGDTDFSAQLTKIKALNPDAIVISALAQEGALIVKQARELGLKGPIVGGNGFNSPDLIKL 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 286 GGDAVEGWVTLSNFWPTNPDLKVQNFNKQFSIVALKnglkdsSPDAFSVSMYDTAKITLEVIEKNKITpaTPLEQARTEI 365
Cdd:cd06348 235 AGKAAEGVIVGSAWSPDNPDPKNQAFVAAYKEKYGK------EPDQFAAQAYDAAYILAEAIKKAGST--TDRADLRDAL 306
|
330 340 350
....*....|....*....|....*....|....*..
gi 974230697 366 KDGWAKvKDYKGVMGNSTIDGVGDGIMEVYALIVKNG 402
Cdd:cd06348 307 ARILIA-KDFEGPLGPFSFDADRDGIQPPVVLIVKDG 342
|
|
| PBP1_ABC_LivK_ligand_binding-like |
cd06347 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
46-395 |
1.44e-65 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380570 [Multi-domain] Cd Length: 334 Bit Score: 212.40 E-value: 1.44e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 46 KIGVLTSLTGKGTDWGKKQKVALEMVEQETNASGGINGSPVKFVIYDTGGENQQAVILTRKLASEDKVLAILGPYFSGEC 125
Cdd:cd06347 1 KIGVIGPLTGEAAAYGQPALNGAELAVDEINAAGGILGKKIELIVYDNKSDPTEAANAAQKLIDEDKVVAIIGPVTSSIA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 126 EVAFPQGNELKIPIISATSAKPGISaANRPWAFRNTMTDDKMIKVGLPIFLKKYPVQNTALVADLKDAVSTSfangtLPS 205
Cdd:cd06347 81 LAAAPIAQKAKIPMITPSATNPLVT-KGGDYIFRACFTDPFQGAALAKFAYEELGAKKAAVLYDVSSDYSKG-----LAK 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 206 AMKGisglSILNDGKSI----TYNTGDTDFSAQVTTLKQLGPQALGIGGLYQEIASLAQEMKRQGLSIPALGNVGMYSDD 281
Cdd:cd06347 155 AFKE----AFEKLGGEIvaeeTYTSGDTDFSAQLTKIKAANPDVIFLPGYYEEAALIIKQARELGITAPILGGDGWDSPE 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 282 LIKQGGDAVEGWVTLSNFWPTNPDLKVQNFNKQFsivALKNGlkdSSPDAFSVSMYDTAKITLEVIEKNKITpatpleqA 361
Cdd:cd06347 231 LLELGGDAVEGVYFTTHFSPDDPSPEVQEFVKAY---KAKYG---EPPNAFAALGYDAVMLLADAIKRAGST-------D 297
|
330 340 350
....*....|....*....|....*....|....
gi 974230697 362 RTEIKDGWAKVKDYKGVMGNSTIDGVGDGIMEVY 395
Cdd:cd06347 298 PEAIRDALAKTKDFEGVTGTITFDPNGNPIKPAV 331
|
|
| PBP1_ABC_HAAT-like |
cd06349 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
46-404 |
7.16e-65 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380572 [Multi-domain] Cd Length: 338 Bit Score: 210.50 E-value: 7.16e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 46 KIGVLTSLTGKGTDWGKKQKVALEMVEQETNASGGINGSPVKFVIYDTGGENQQAVILTRKLASEDKVLAILGPYFSGEC 125
Cdd:cd06349 1 KIGVSGPLTGDNAEYGQQFKNGVELAVDEINAAGGVNGRKLELVVYDDQGDPKEAVNIAQKFVSDDKVVAVIGDFSSSCS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 126 EVAFPQGNELKIPIISATSAKPGISAANrPWAFRNTMTDDKMIKVGLPIFLKKYPVQNTALVAdLKDAVSTSFANGTLPS 205
Cdd:cd06349 81 MAAAPIYEEAGLVQISPTASHPDFTKGG-DYVFRNSPTQAVEAPFLADYAVKKLGAKKIAIIY-LNTDWGVSAADAFKKA 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 206 AMKgiSGLSILNDGksiTYNTGDTDFSAQVTTLKQLGPQALGIGGLYQEIASLAQEMKRQGLSIPALGNVGMYSDDLIKQ 285
Cdd:cd06349 159 AKA--LGGEIVATE---AYLPGTKDFSAQITKIKNANPDAIYLAAYYNDAALIAKQARQLGWDVQIFGSSSLYSPEFIEL 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 286 GGDAVEGWVTLSNFWPTNPDLKVQNFNKQFsiVALKNGLkdssPDAFSVSMYDTAKITLEVIEKNKITpatpleqaRTEI 365
Cdd:cd06349 234 AGDAAEGVYLSSPFFPESPDPEVKEFVKAY--KAKYGED----PDDFAARAYDAVNILAEAIEKAGTD--------REAI 299
|
330 340 350
....*....|....*....|....*....|....*....
gi 974230697 366 KDGWAKVKDYKGVMGNSTIDGVGDGIMEVYALIVKNGKW 404
Cdd:cd06349 300 RDALANIKDFSGLTGTITFDENGDVLKSLTILVVKDGKF 338
|
|
| PBP1_ABC_transporter_LIVBP-like |
cd06268 |
periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the ... |
46-342 |
2.32e-57 |
|
periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type 1 periplasmic binding fold protein superfamily; Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type 1 periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC-type Leucine-Isoleucine-Valine-Binding Proteins (LIVBP), which are homologous to the aliphatic amidase transcriptional repressor, AmiC, of Pseudomonas aeruginosa. The uncharacterized periplasmic components of various ABC-type transport systems are included in this group.
Pssm-ID: 380492 [Multi-domain] Cd Length: 298 Bit Score: 189.85 E-value: 2.32e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 46 KIGVLTSLTGKGTDWGKKQKVALEMVEQETNASGGINGSPVKFVIYDTGGENQQAVILTRKLASEDKVLAILGPYFSGEC 125
Cdd:cd06268 1 KIGVVVPLTGPYADYGEEILRGVALAVEEINAAGGINGRKLELVIADDQGDPETAVAVARKLVDDDKVLAVVGHYSSSVT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 126 EVAFPQGNELKIPIISATSAKPGISAANRPWAFRNTMTDDKMIKVGLPIFLKKYPVQNTALVADlKDAVSTSFANGTLPS 205
Cdd:cd06268 81 LAAAPIYQEAGIPLISPGSTAPELTEGGGPYVFRTVPSDAMQAAALADYLAKKLKGKKVAILYD-DYDYGKSLADAFKKA 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 206 AMKgiSGLSILNDgksITYNTGDTDFSAQVTTLKQLGPQALGIGGLYQEIASLAQEMKRQGLSIPALGNVGMYSDDLIKQ 285
Cdd:cd06268 160 LKA--LGGEIVAE---EDFPLGTTDFSAQLTKIKAAGPDVLFLAGYGADAANALKQARELGLKLPILGGDGLYSPELLKL 234
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 974230697 286 GGDAVEGWVTLSNFWPTNPDLKVQNFNKQFSivalknGLKDSSPDAFSVSMYDTAKI 342
Cdd:cd06268 235 GGEAAEGVVVAVPWHPDSPDPPKQAFVKAYK------KKYGGPPSWRAATAYDATQA 285
|
|
| LivK |
COG0683 |
ABC-type branched-chain amino acid transport system, periplasmic component [Amino acid ... |
43-408 |
8.51e-52 |
|
ABC-type branched-chain amino acid transport system, periplasmic component [Amino acid transport and metabolism];
Pssm-ID: 440447 [Multi-domain] Cd Length: 314 Bit Score: 175.89 E-value: 8.51e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 43 APLKIGVLTSLTGKGTDWGKKQKVALEMVEQETNASGGINGSPVKFVIYDTGGENQQAVILTRKLASEDKVLAILGPYFS 122
Cdd:COG0683 2 DPIKIGVLLPLTGPYAALGQPIKNGAELAVEEINAAGGVLGRKIELVVEDDASDPDTAVAAARKLIDQDKVDAIVGPLSS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 123 GECEVAFPQGNELKIPIISATSAKPGIS-AANRPWAFRNTMTDDKMIKVGLPIFLKKYPVQNTALVADlKDAVSTSFANG 201
Cdd:COG0683 82 GVALAVAPVAEEAGVPLISPSATAPALTgPECSPYVFRTAPSDAQQAEALADYLAKKLGAKKVALLYD-DYAYGQGLAAA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 202 TLPSAMKGisGLSILndgKSITYNTGDTDFSAQVTTLKQLGPQALGIGGLYQEIASLAQEMKRQGLSIPalgnvgmysdd 281
Cdd:COG0683 161 FKAALKAA--GGEVV---GEEYYPPGTTDFSAQLTKIKAAGPDAVFLAGYGGDAALFIKQAREAGLKGP----------- 224
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 282 LIKQggdavegwvtlsnFwptnpdlkVQNFNKQFsivalknglkDSSPDAFSVSMYDTAKITLEVIEKNKITpatpleqA 361
Cdd:COG0683 225 LNKA-------------F--------VKAYKAKY----------GREPSSYAAAGYDAALLLAEAIEKAGST-------D 266
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 974230697 362 RTEIKDGWAKVKdYKGVMGNSTIDGVGDGIMEVYALIVK-NGKWQRLE 408
Cdd:COG0683 267 REAVRDALEGLK-FDGVTGPITFDPDGQGVQPVYIVQVKaDGKFVVVE 313
|
|
| PBP1_ABC_RPA1789-like |
cd06333 |
type 1 periplasmic binding-protein component (CouP) of an ABC system (CouPSTU; RPA1789, ... |
46-380 |
1.47e-49 |
|
type 1 periplasmic binding-protein component (CouP) of an ABC system (CouPSTU; RPA1789, RPA1791-1793), involved in active transport of lignin-derived aromatic substrates, and its close homologs; This group includes RPA1789 (CouP) from Rhodopseudomonas palustris and its close homologs in other bacteria. RPA1789 (CouP) is the periplasmic binding-protein component of an ABC system (CouPSTU; RPA1789, RPA1791-1793) that is involved in the active transport of lignin-derived aromatic substrates. Members of this group has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP).
Pssm-ID: 380556 [Multi-domain] Cd Length: 342 Bit Score: 170.81 E-value: 1.47e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 46 KIGVLTSLTGKGTDWGKKQKVALEMVEQETNASGGINGSPVKFVIYDTGGENQQAVILTRKLASEDKVLAILGPYFSGEC 125
Cdd:cd06333 1 KIGAILSLTGPAASLGIPERNAVELLVEQINAAGGINGRKLELIVYDDESDPTKAVTNARKLIEEDKVDAIIGPSTTGES 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 126 EVAFPQGNELKIPIISATSAkPGISAANRPWAFRNTMTDDKMIKVglpIF--LKKYPVQNTALVADlKDAVSTSFANGTL 203
Cdd:cd06333 81 LAVAPIAEEAKVPLISLAGA-AAIVEPVRKWVFKTPQSDSLVAEA---ILdyMKKKGIKKVALLGD-SDAYGQSGRAALK 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 204 PSAMKGisGLSILNDGksiTYNTGDTDFSAQVTTLKQLGPQALGIGGLYQEIASLAQEMKRQGLSIPALGNVGMYSDDLI 283
Cdd:cd06333 156 KLAPEY--GIEIVADE---RFARTDTDMTAQLTKIRAAKPDAVLVWASGPPAALVAKNLRQLGYKGPIYQSHGAANQDFI 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 284 KQGGDAVEG--------WV--TLSnfwPTNPDLKV-QNFNKQFsivALKNGlkdSSPDAFSVSMYDTAKITLEVIEKNki 352
Cdd:cd06333 231 KLAGKAAEGvilpagklLVadQLP---DSDPQKKVlLEFVKAY---EAKYG---EGPSTFAGHAYDALLLLVEAIEPA-- 299
|
330 340
....*....|....*....|....*...
gi 974230697 353 TPATpleqaRTEIKDGWAKVKDYKGVMG 380
Cdd:cd06333 300 GGTD-----RAALRDALENTKGLVGVTG 322
|
|
| PBP1_ABC_LIVBP-like |
cd06342 |
type 1 periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active ... |
46-389 |
3.55e-48 |
|
type 1 periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine); This subgroup includes the type 1 periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Pssm-ID: 380565 [Multi-domain] Cd Length: 334 Bit Score: 166.93 E-value: 3.55e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 46 KIGVLTSLTGKGTDWGKKQKVALEMVEQETNASGGINGSPVKFVIYDTGGENQQAVILTRKLASeDKVLAILGPYFSGEC 125
Cdd:cd06342 1 KIGVAGPLTGPNAALGQDIRNGAELAVDEINAKGGGLGFKIELVAQDDACDPAQAVAAAQKLVA-DGVVAVIGHYNSGAA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 126 EVAFPQGNELKIPIISATSAKPGISAANRPWAFRNTMTDDKMIKVGLPIFLKKYPVQNTALVADlKDAVSTSFANGTLpS 205
Cdd:cd06342 80 IAAAPIYAEAGIPMISPSATNPKLTEQGYKNFFRVVGTDDQQGPAAADYAAKTLKAKRVAVIHD-GTAYGKGLADAFK-K 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 206 AMKGISGLSILNDGksitYNTGDTDFSAQVTTLKQLGPQALGIGGLYQEIASLAQEMKRQGLSIPALGNVGMYSDDLIKQ 285
Cdd:cd06342 158 ALKALGGTVVGREG----ITPGTTDFSALLTKIKAANPDAVYFGGYYPEAGLLLRQLREAGLKAPFMGGDGIVSPDFIKA 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 286 GGDAVEGWVTLSNFWPTNPDLKVQNFNKQFsivalkNGLKDSSPDAFSVSMYDTAKITLEVIEK-NKITPATPLEQARTE 364
Cdd:cd06342 234 AGDAAEGVYATTPGAPPEKLPAAKAFLKAY------KAKFGEPPGAYAAYAYDAAQVLLAAIEKaGSTDRAAVAAALRAT 307
|
330 340
....*....|....*....|....*
gi 974230697 365 ikdgwakvkDYKGVMGNSTIDGVGD 389
Cdd:cd06342 308 ---------DFDGVTGTISFDAKGD 323
|
|
| PBP1_ABC_HAAT-like |
cd19988 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
46-344 |
2.11e-46 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380643 [Multi-domain] Cd Length: 302 Bit Score: 161.29 E-value: 2.11e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 46 KIGVLTSLTGKGTDWGKKQKVALEMVEQETNASGGINGSPVKFVIYDTGGENQQAVILTRKLASEDKVLAILGPYFSGEC 125
Cdd:cd19988 1 KIGVFGPLSGDAAPYGQAMLQGAELAVEEINAAGGILGIPIELVVEDDEGLPAASVSAAKKLIYQDKVWAIIGSINSSCT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 126 EVAFPQGNELKIPIISATSAKPGISAANRPWAFRNTMTDDKMIKVGLPIFLKKYPVQNTALVadlkdAVSTSFANGTLPS 205
Cdd:cd19988 81 LAAIRVALKAGVPQINPGSSAPTITESGNPWVFRCTPDDRQQAYALVDYAFEKLKVTKIAVL-----YVNDDYGRGGIDA 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 206 AMKGI--SGLSILNdgkSITYNTGDTDFSAQVTTLKQLGPQALGIGGLYQEIASLAQEMKRQGLSIPALGNVGMYSDDLI 283
Cdd:cd19988 156 FKDAAkkYGIEVVV---EESYNRGDKDFSPQLEKIKDSGAQAIVMWGQYTEGALIAKQARELGLKQPLFGSDGLVTPKFI 232
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 974230697 284 KQGGDAVEGWVTLSNFWPTNPDLKVQNFNKQFSivalknGLKDSSPDAFSVSMYDTAKITL 344
Cdd:cd19988 233 ELAGDAAEGAIATTPFLPDSDDPKVSAFVEKYK------KRYGEEPDVFAAQAYDAMNILA 287
|
|
| PBP1_ABC_ligand_binding-like |
cd19980 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
46-395 |
2.31e-45 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380635 [Multi-domain] Cd Length: 334 Bit Score: 159.70 E-value: 2.31e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 46 KIGVLTSLTGKGTDWGKKQKVALEMVEQETNASGGINGSPVKFVIYDTGGENQQAVILTRKLASEDKVLAILGPYFSGEC 125
Cdd:cd19980 1 KIGVIAPLSGPVAALGQQVLNGAKLAVEEINAKGGVLGRKLELVVEDDKCPPAEGVAAAKKLITDDKVPAIIGAWCSSVT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 126 EVAFPQGNELKIPIISATSAKPGISAANRPWAFRNTMTDDKMIKVGLPIFLKKYPVQNTALVadlkdAVSTSFANGT--- 202
Cdd:cd19980 81 LAVMPVAERAKVPLVVEISSAPKITEGGNPYVFRLNPTNSMLAKAFAKYLADKGKPKKVAFL-----AENDDYGRGAaea 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 203 LPSAMKGiSGLSILndgKSITYNTGDTDFSAQVTTLKQLGPQALGIGGLYQEIASLAQEMKRQGLSIPALGNVGMYSDDL 282
Cdd:cd19980 156 FKKALKA-KGVKVV---ATEYFDQGQTDFTTQLTKLKAANPDAIFVVAETEDGALILKQARELGLKQQLVGTGGTTSPDL 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 283 IKQGGDAVEGWVTLSNFWPTNPDLKVQNFNKQFsivalKNGLKDsSPDAFSVSMYDTAKITLEVIEKNKitpatplEQAR 362
Cdd:cd19980 232 IKLAGDAAEGVYGASIYAPTADNPANKAFVAAY-----KKKYGE-PPDKFAALGYDAVMVIAEAIKKAG-------STDP 298
|
330 340 350
....*....|....*....|....*....|...
gi 974230697 363 TEIKDGWAKVKDYKGVMGNSTIDGVGDGIMEVY 395
Cdd:cd19980 299 EKIRAAALKKVDYKGPGGTIKFDEKGQAHKNVV 331
|
|
| PBP1_ABC_HAAT-like |
cd19986 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
46-342 |
2.96e-45 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380641 [Multi-domain] Cd Length: 297 Bit Score: 158.17 E-value: 2.96e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 46 KIGVLTSLTGKGTDWGKKQKVALEMVEQETNASGGINGSPVKFVIYDTGGENQQAVILTRKLASEDKVLAILGPYFSGEC 125
Cdd:cd19986 1 KIGVVAPLTGPAALNGEYQKNGAQLALEEINAAGGVLGRPLELVVEDDQGTNTGAVNAVNKLISDDKVVAVIGPHYSTQV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 126 EVAFPQGNELKIP-IISATSAKpgISAANRPWAFRNTMTDDKMIKVglpifLKKYPVQN-----TALVADlKDAVSTSFA 199
Cdd:cd19986 81 LAVSPLVKEAKIPvITGGTSPK--LTEQGNPYMFRIRPSDSVSAKA-----LAKYAVEElgakkIAILYD-NDDFGTGGA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 200 NGTLPsAMKGIsGLSILndgKSITYNTGDTDFSAQVTTLKQLGPQALGIGGLYQEIASLAQEMKRQGLSIPALGNVGMYS 279
Cdd:cd19986 153 DVVTA-ALKAL-GLEPV---AVESYNTGDKDFTAQLLKLKNSGADVIIAWGHDAEAALIARQIRQLGLDVPVIGSSSFAT 227
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 974230697 280 DDLIKQGGDAVEGWVTLSNFWPTNPDLKVQNFNKQFSivALKNglkdSSPDAFSVSMYDTAKI 342
Cdd:cd19986 228 PTVLLLAGEALEGIYSVTDFVPSDPDPKVQAFVKKYK--AKYG----EDPDLYSAWYYDAMYL 284
|
|
| PBP1_ABC_ligand_binding-like |
cd19984 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
46-342 |
5.41e-41 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380639 [Multi-domain] Cd Length: 296 Bit Score: 146.98 E-value: 5.41e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 46 KIGVLTSLTGKGTDWGKKQKVALEMVEQETNASGGINGSPVKFVIYDTGGENQQAVILTRKLASEDKVLAILGPYFSGEC 125
Cdd:cd19984 1 KIGVILPLTGDAASYGEDMKNGIELAVEEINAAGGINGKKIELIYEDSKCDPKKAVSAANKLINVDKVKAIIGGVCSSET 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 126 EVAFPQGNELKIPIISATSAKPGISAANrPWAFRNTMTDDKMIKVgLPIFLKKYPVQNTALVADLKD---AVSTSFANgt 202
Cdd:cd19984 81 LAIAPIAEQNKVVLISPGASSPEITKAG-DYIFRNYPSDAYQGKV-LAEFAYNKLYKKVAILYENNDygvGLKDVFKK-- 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 203 lpsAMKGISGLSILNDGksitYNTGDTDFSAQVTTLKQLGPQALGIGGLYQEIASLAQEMKRQGLSIPALGNVGMYSDDL 282
Cdd:cd19984 157 ---EFEELGGKIVASES----FEQGETDFRTQLTKIKAANPDAIFLPGYPKEGGLILKQAKELGIKAPILGSDGFEDPEL 229
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 283 IKQGGDAVEGWVTLSNFWPTNPDLKVQNFNKQFsivalKNGlKDSSPDAFSVSMYDTAKI 342
Cdd:cd19984 230 LEIAGEAAEGVIFTYPAFDDSSEKKQKFFFYRY-----KEK-YGKEPDIYAALAYDAVMI 283
|
|
| PBP1_ABC_ligand_binding-like |
cd06343 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
46-404 |
5.83e-40 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Pssm-ID: 380566 [Multi-domain] Cd Length: 355 Bit Score: 145.79 E-value: 5.83e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 46 KIGVLTSLTGKGTDWGKKQKVALEMVEQETNASGGINGSPVKFVIYDTGGENQQAVILTRKLASEDKVLAILGPYFSGEC 125
Cdd:cd06343 8 KIGTSLPLSGPAAAYGKPVRAGAAAYFDEVNAAGGINGRKIELIVEDDGYDPARAVAAVRKLVEQDKVFAIVGGLGTPTN 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 126 EVAFPQGNELKIPIISATSAKPGISAANRPWAFRNTMTDDKMIKVGLPIFLKKYPVQNTALVAdLKDAVSTSFANGtLPS 205
Cdd:cd06343 88 LAVRPYLNEAGVPQLFPATGASALSPPPKPYTFGVQPSYEDEGRILADYIVETLPAAKVAVLY-QNDDFGKDGLEG-LKE 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 206 AMKGiSGLSILNDgksITYNTGDTDFSAQVTTLKQLGPQALGIGGLYQEIASLAQEMKRQGLSIPALGNVGMYSDDLIKQ 285
Cdd:cd06343 166 ALKA-YGLEVVAE---ETYEPGDTDFSSQVLKLKAAGADVVVLGTLPKEAAAALKEAAKLGWKPTFLGSSVSADPTTLAK 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 286 -GGDAVEGWVTLSNF-WPTNPDL-KVQNFNKqfsivALKNGLKDSSPDAFSVSMYDTAKITLEVIEK--NKITPATpLEQ 360
Cdd:cd06343 242 aGGDAAEGVYSASYLkDPTDADDpAVKEFRE-----AYKKYFPDDPPNAYALYGYAAAQVFVEALKRagKDLTREG-LIK 315
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 974230697 361 ARTEIKDGWAkvkdykGVMGN--STIDGVGDGIMEVYALIVKNGKW 404
Cdd:cd06343 316 ALESLKDFDD------GGPGPpvTFSPDDHRGIESMYLVQVDGGKW 355
|
|
| PBP1_ABC_ligand_binding-like |
cd06340 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
46-371 |
1.55e-39 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, their ligand specificity has not been determined experimentally.
Pssm-ID: 380563 [Multi-domain] Cd Length: 352 Bit Score: 144.62 E-value: 1.55e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 46 KIGVLTSLTGKGTDWGKKQKVALEMVEQETNASGGI---NGSPVKFVIYDTGGENQQAVILTRKLASEDKVLAILGPYFS 122
Cdd:cd06340 1 KIGVLYPLSGPLALIGQEAKRGAELAVDEINAAGGIkslGGAKIELVVADTQSDPEVAASEAERLITQEGVVAIIGAYSS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 123 GECEVAFPQGNELKIPIISATSAKPGISAANRPWAFRNTMTDDKMIKVGLPiFLK------KYPVQNTALVADlKDAVST 196
Cdd:cd06340 81 SVTLAASQVAERYGVPFVTASAVADEITERGFKYVFRTAPTASQFAEDAVD-FLKelakkkGKKIKKVAIIYE-DSAFGT 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 197 SFANGTLPSAMKgiSGLSILNDgksITYNTGDTDFSAQVTTLKQLGPQALGIGGLYQEIASLAQEMKRQGLSIPALGNV- 275
Cdd:cd06340 159 SVAKGLKKAAKK--AGLEVVLD---EPYPAGATDLSSEVLKLKAAKPDVVFATSYTNDAILLLRTMKELGFKPKAIIGVg 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 276 -GMYSDDLIKQGGDAVEGWVTLSNFWPTNPDLK--VQNFNKQFsivalKNGLKDsSPDAFSVSMYDTAKITLEVIEKNKI 352
Cdd:cd06340 234 gGYSDPEFLKALGKDAEGVFSVVPWSPDLAKKKpgAKEVNERY-----KKKYGE-DMTGHAARAYTAAWVLADALERAGS 307
|
330
....*....|....*....
gi 974230697 353 TPATPLEQARTEIKDGWAK 371
Cdd:cd06340 308 TDPEAIRAAAALTLDIPEG 326
|
|
| PBP1_ABC_HAAT-like |
cd19981 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
46-349 |
1.42e-38 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380636 [Multi-domain] Cd Length: 297 Bit Score: 140.50 E-value: 1.42e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 46 KIGVLTSLTGKGTDWGKKQKVALEMVEQETNASGGINGSPVKFVIYDTGGENQQAVILTRKLASEDKVLAILGPYFSGEC 125
Cdd:cd19981 1 KIGFFAPLTGPAAADGKSALHGAELAVEQINAAGGINGKKVELVVYDDQASPKQAVNIAQKLIEQDKVVAVVSGSYSGPT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 126 EVAFPQGNELKIPIISATSAKPGISAANrPWAFRNTMTDDKMIKVGLPIFLKKYPVQNTALVAdLKDAVSTSFANGTLPS 205
Cdd:cd19981 81 RAAAPIFQEAKVPMVSAYAVHPDITKAG-DYVFRVAFLGPVQGRAGAEYAVKDLGAKKVAILT-IDNDFGKSLAAGFKEE 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 206 AMKgiSGLSILNDgksITYNTGDTDFSAQVTTLKQLGPQALGIGGLYQEIASLAQEMKRQGLSIPALGNVGMYSDDLIKQ 285
Cdd:cd19981 159 AKK--LGAEIVSE---YAYALGDRDFRPILTKIKSANPDAIYASGYYAEAAPIVKQARELGIKVPIIGQEGYDSPKFIEI 233
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 974230697 286 GGDAVEGWVTLSNFWPTNPDLKVQNFNKQFsivalkNGLKDSSPDAFSVSMYDTAKITLEVIEK 349
Cdd:cd19981 234 AGSAAEGVIITTSLNRDSDRPITQKFIKEY------RKRYGIDPDMVAASTYDAVMVLAGEVQK 291
|
|
| Peripla_BP_6 |
pfam13458 |
Periplasmic binding protein; This family includes a diverse range of periplasmic binding ... |
44-349 |
5.95e-36 |
|
Periplasmic binding protein; This family includes a diverse range of periplasmic binding proteins.
Pssm-ID: 433225 [Multi-domain] Cd Length: 342 Bit Score: 134.71 E-value: 5.95e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 44 PLKIGVLTSLTGKGTDWGKKQKVALEMVEQETNASGGINGSPVKFVIYDTGGENQQAVILTRKLASEDKVLAILGPYFSG 123
Cdd:pfam13458 1 PIKIGVLTPLSGPYASSGKSSRAGARAAIEEINAAGGVNGRKIELVVADDQGDPDVAAAAARRLVDQDGVDAIVGGVSSA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 124 ECEVAFPQGNELKIPIISATSakpGISAANRPWAFRNTMTDDKMIKVGLPIFLKKYPVQNTALVADlkdavSTSFANGTL 203
Cdd:pfam13458 81 VALAVAEVLAKKGVPVIGPAA---LTGEKCSPYVFSLGPTYSAQATALGRYLAKELGGKKVALIGA-----DYAFGRALA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 204 PSAMKGI--SGLSILNdgkSITYNTGDTDFSAQVTTLKQLGPQALGIGGLYQEIASLAQEMKRQGLS---IPALGNvGMY 278
Cdd:pfam13458 153 AAAKAAAkaAGGEVVG---EVRYPLGTTDFSSQVLQIKASGADAVLLANAGADTVNLLKQAREAGLDakgIKLVGL-GGD 228
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 974230697 279 SDDLIKQGGDAVEGWVTLSNFWPTNPDLKVQNFNKQFSIVAlknglKDSSPDAFSVSMYDTAKITLEVIEK 349
Cdd:pfam13458 229 EPDLKALGGDAAEGVYATVPFFPDLDNPATRAFVAAFAAKY-----GEAPPTQFAAGGYIAADLLLAALEA 294
|
|
| PBP1_ABC_ligand_binding-like |
cd06338 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
46-349 |
9.28e-35 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however, their ligand specificity has not been determined experimentally.
Pssm-ID: 380561 [Multi-domain] Cd Length: 347 Bit Score: 131.55 E-value: 9.28e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 46 KIGVLTSLTGKGTDWGKKQKVALEMVEQETNASGGINGS----PVKFVIYDTGGENQQAVILTRKLASEDKVLAILGPYF 121
Cdd:cd06338 1 KIGASLSLTGPFAGEGKAQKRGYELWVEDVNAAGGVKGGgkkrPVELVYYDDQSDPATAVRLYEKLITEDKVDLLLGPYS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 122 SGECEVAFPQGNELKIPIISATSAKPGISAANRPWAFRNTMTDDKMIKVGLPIFLKKYPVQNTALVADLKDAVSTSFANG 201
Cdd:cd06338 81 SGLTLAAAPVAEKYGIPMIAGGAASDSIFERGYKYVFGVLPPASDYAKGLLDLLAELGPKPKTVAIVYEDDPFGKEVAEG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 202 TLPSAMKGisGLSILNDgksITYNTGDTDFSAQVTTLKQLGPQALGIGGLYQEIASLAQEMKRQGLSIPAL-GNVGMYSD 280
Cdd:cd06338 161 AREAAKKA--GLEVVYD---ESYPPGTTDFSPLLTKVKAANPDILLVGGYPPDAITLVRQMKELGYNPKAFfLTVGPAFP 235
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 974230697 281 DLIKQGGDAVEGWVTLSnFWptNPDLKVQNF--NKQFsiVALKNGLKDSSPDAFSVSMYDTAKITLEVIEK 349
Cdd:cd06338 236 AFREALGKDAEGVLGPS-QW--EPSLPYKVFpgAKEF--VKAYKEKFGEEPSYHAAAAYAAGQVLQQAIEK 301
|
|
| PBP1_ABC_ligand_binding-like |
cd06345 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
46-380 |
1.11e-33 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380568 [Multi-domain] Cd Length: 356 Bit Score: 128.92 E-value: 1.11e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 46 KIGVLTSLTgkgTDWGKKQKVALEMVEQETNASGGINGSPVKFVIYDTGGENQQAVILTRKLASEDKVLAILGPYFSGEC 125
Cdd:cd06345 1 KIGVLGPLS---APAGEAMERGAELAVEEINAAGGILGRKVELVVADTQGKPEDGVAAAERLITEDKVDAIVGGFRSEVV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 126 EVAFPQGNELKIPIISATSAKPGIS------AANRPWAFRNTMTDDKMIKVGLP----IFLKKYPVQNTALVADlKDAVS 195
Cdd:cd06345 78 LAAMEVAAEYKVPFIVTGAASPAITkkvkkdYEKYKYVFRVGPNNSYLGATVAEflkdLLVEKLGFKKVAILAE-DAAWG 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 196 TSFANGT---LPSAmkgisGLSILNDgksITYNTGDTDFSAQVTTLKQLGPQALGIGGLYQEIASLAQEMKRQGLSIPAL 272
Cdd:cd06345 157 RGIAEALkklLPEA-----GLEVVGV---ERFPTGTTDFTPILSKIKASGADVIVTIFSGPGGILLVKQWAELGVPAPLV 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 273 G-NVGMYSDDLIKQGGDAVEGWVTLSNFWPTNPDLK-----VQNFNKQFsivalknglkDSSPDAFSVSMYDTAKITLEV 346
Cdd:cd06345 229 GiNVPAQDPEFWENTGGAGEYEITLAFAAPKAKVTPktkpfVDAYKKKY----------GEAPNYTAYTAYDAIYILAEA 298
|
330 340 350
....*....|....*....|....*....|....
gi 974230697 347 IEKNKITPATPLEQARTEIkdgwakvkDYKGVMG 380
Cdd:cd06345 299 IERAGSTDPDALVKALEKT--------DYEGVRG 324
|
|
| PBP1_ABC_ligand_binding-like |
cd06335 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
46-384 |
3.34e-33 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Pssm-ID: 380558 [Multi-domain] Cd Length: 348 Bit Score: 127.34 E-value: 3.34e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 46 KIGVLTSLTGKGTDWGKKQKVALEMVEQETNASGGINGSPVKFVIYDTGGENQQAVILTRKLASEDKVLAILGPYFSGEC 125
Cdd:cd06335 1 KIGVIGPLTGPSAELGESARRGVELAVEEINAAGGILGRKIELVERDDEANPTKAVQNAQELIDKEKVVAIIGPTNSGVA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 126 EVAFPQGNELKIPIISATSAKPGISAAN---RPWAFRNTMTDDKMIKvglpiFLKKYPVQNT----ALVADlkdavSTSF 198
Cdd:cd06335 81 LATIPILQEAKIPLIIPVATGTAITKPPakpRNYIFRVAASDTLQAD-----FLVDYAVKKGfkkiAILHD-----TTGY 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 199 ANGtlpsAMKGISGLsILNDGK----SITYNTGDTDFSAQVTTLKQLGPQALGIGGLYQEIASLAQEMKRQGLSIPALGN 274
Cdd:cd06335 151 GQG----GLKDVEAA-LKKRGItpvaTESFKIGDTDMTPQLLKAKDAGADVILVYGLGPDLAQILKAMEKLGWKVPLVGS 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 275 VGMYSDDLIKQGGDAVEGWVTLSNFWPTNPDLKVQNFNKQFsivALKNGLKDSSPDAFSVSMYDTAKITLEVIEKNKITp 354
Cdd:cd06335 226 WGLSMPNFIELAGPLAEGTIMTQTFIEDYLTPRAKKFIDAY---KKKYGTDRIPSPVSAAQGYDAVYLLAAAIKQAGST- 301
|
330 340 350
....*....|....*....|....*....|
gi 974230697 355 atpleqARTEIKDGWAKVKDYKGVMGNSTI 384
Cdd:cd06335 302 ------DGKKIRAALENLKGYVGGVKTYNK 325
|
|
| PBP1_SBP-like |
cd19989 |
periplasmic substrate-binding domain of active transport proteins; Periplasmic ... |
46-340 |
1.43e-31 |
|
periplasmic substrate-binding domain of active transport proteins; Periplasmic substrate-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Pssm-ID: 380644 [Multi-domain] Cd Length: 299 Bit Score: 121.61 E-value: 1.43e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 46 KIGVLTSLTGKGTDWGKKQKVALEMVEQETNASGGINGSPVKFVIYDTGGENQQAVILTRKLASEDKVLAILGPYFSGEC 125
Cdd:cd19989 1 KIGVLTPLSGPYAALGEEARRGAQLAVEEINAAGGILGRPVELVVEDTEGKPATAVQKARKLVEQDGVDFLTGAVSSAVA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 126 EVAFPQGNELKIPIISATSAKPGISAAN-RPWAFRNTmTDDKMIKVGLPIFLKKYPVQNTALV-AD--LKDAVSTSFANg 201
Cdd:cd19989 81 LAVAPKAAELKVPYLVTVAADDELTGENcNRYTFRVN-TSDRMIARALAPWLAENGGKKWYIVyADyaWGQSSAEAFKE- 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 202 tlpsAMKGiSGLSILNDGKSityNTGDTDFSAQVTTLKQLGPQAL--GIGGlyQEIASLAQEMKRQGLS--IPALGNVGM 277
Cdd:cd19989 159 ----AIEE-LGGEVVGTLFA---PLGTTDFSSYITQISDSGADGLllALAG--SDAVNFLKQAGQFGLGkkYKIVGGILS 228
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 974230697 278 YSDDLIKQGGDAVEGWVTLSNFWPTNPDLKVQNFnkqfsiVALKNGLKDSSPDAFSVSMYDTA 340
Cdd:cd19989 229 IEPLALPALGDAAEGVYGGVRYPPTLDTPANRAF------VEAYEKEYGEAPDNFAGEAYEAM 285
|
|
| PBP1_ABC_ligand_binding-like |
cd19982 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
46-315 |
4.43e-29 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, their ligand specificity has not been determined experimentally.
Pssm-ID: 380637 [Multi-domain] Cd Length: 302 Bit Score: 115.07 E-value: 4.43e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 46 KIGVLTSLTGKGTDWGKKQKVALEMVEQETNASGGINGSPVKFVIYDTGGENQQAVILTRKLASEDKVLAILGPYFSG-- 123
Cdd:cd19982 1 KIGAILSLTGPFAPFGEMFKNGYEMALEEINAAGGIKGKKLELVIEDDQSKPQTALAAAEKLVSQDKVPLIVGGYSSGit 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 124 --ECEVAfpqgNELKIPIISATSAKPGISAANRPWAFRNTMTDDkMIKVGLPIFLKKYPVQNTALVADLKDAVSTSFANG 201
Cdd:cd19982 81 lpVAAVA----ERQKIPLLVPTAADDDITKPGYKYVFRLNPPAS-IYAKALFDFFKELVKPKTIAILYENTAFGTSVAKA 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 202 TLPSAMKGisGLSILNDGKsitYNTGDTDFSAQVTTLKQLGPQALGIGGLYQEIASLAQEMKRQGLSIPA-LGNVGMYS- 279
Cdd:cd19982 156 ARRFAKKR--GIEVVADES---YDKGATDFKPLLNKVKAANPDVVYMVSYLNDAILLMRQAKELGLNPKLfAGGGAGFTi 230
|
250 260 270
....*....|....*....|....*....|....*.
gi 974230697 280 DDLIKQGGDAVEGWVTLSNFWPTNPDLKVQNFNKQF 315
Cdd:cd19982 231 PEFLKQAGPLAEYVVTATLWSPDVKYPGAKEFYEKY 266
|
|
| PBP1_ABC_ligand_binding-like |
cd06346 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
46-338 |
3.69e-28 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380569 [Multi-domain] Cd Length: 314 Bit Score: 112.66 E-value: 3.69e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 46 KIGVLTSLTGKGTDWGKKQKVALEMVEQETNASGGINGSPVKFVIYDTGGENQQAVILTRKLASEDKVLAILGPYFSGEC 125
Cdd:cd06346 1 KIGALLPLTGPLASLGPPMLAAAELAVEEINAAGGVLGKKVELVVEDSQTDPTAAVDAARKLVDVEGVPAIVGAASSGVT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 126 ----EVAFPQGnelkIPIISATSAKPGISA-ANRPWAFRNTMTDDKMIKVgLPIFLKKYPVQNTALVAdLKDAVSTSFAN 200
Cdd:cd06346 81 lavaSVAVPNG----VVQISPSSTSPALTTlEDKGYVFRTAPSDALQGVV-LAQLAAERGFKKVAVIY-VNNDYGQGLAD 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 201 gTLPSAMKGISGlSILNdgkSITYNTGDTDFSAQVTTLKQLGPQALGIGGLYQEIASLAQEMKRQGLS-IPALGNVGMYS 279
Cdd:cd06346 155 -AFKKAFEALGG-TVTA---SVPYEPGQTSYRAELAQAAAGGPDALVLIGYPEDGATILREALELGLDfTPWIGTDGLKS 229
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 280 DDLIKQ-GGDAVEGWVTLSNFWPTNPDlkVQNFNKQFSivalknGLKDSSPDAFSVSMYD 338
Cdd:cd06346 230 DDLVEAaGAEALEGMLGTAPGSPGSPA--YEAFAAAYK------AEYGDDPGPFAANAYD 281
|
|
| PBP1_ABC_HAAT-like |
cd19983 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
46-315 |
1.94e-26 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of hydrophobic amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of hydrophobic amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380638 [Multi-domain] Cd Length: 303 Bit Score: 107.67 E-value: 1.94e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 46 KIGVLTSLTGKGTDWGKKQKVALEMVEQETNASGGINGSPVKFVIYDTGGENQQAVILTRKLAsEDKVLAILGPYFSGEC 125
Cdd:cd19983 1 RIGFVGGLTGRYSDLGVQGRNGAQLAVEEINAAGGINGRPVELIIRDDQQDPEAAKAADRELI-AGGVVAIIGHMTSAMT 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 126 EVAFPQGNELKIPIISATSAKPGISAANRpWAFRNTMTDDKMIKVGLPIFLKKYPVQNTALVADLK-DAVSTSFANGTLP 204
Cdd:cd19983 80 VAVLPVINEAKVLMISPTVSTPELSGKDD-YFFRVTPTTRESAQALARYAYNRGGLRRVAVIYDLSnRAYSESWLDNFRS 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 205 SAMKGisGLSILndgKSITYNTG-DTDFSAQVTTLKQLGPQALGIGGLYQEIASLAQEMKRQGLSIPALGNVGMYSDDLI 283
Cdd:cd19983 159 EFEAL--GGRIV---AEIPFSSGaDVDFSDLARRLLASKPDGLLLVASAVDTAMLAQQIRKLGSKIPLFSSAWAATEELL 233
|
250 260 270
....*....|....*....|....*....|..
gi 974230697 284 KQGGDAVEGWVTLSNFWPTNPDLKVQNFNKQF 315
Cdd:cd19983 234 ELGGKAVEGMLFSQAYDRNSSNPRYLAFKEAY 265
|
|
| PBP1_As_SBP-like |
cd06330 |
periplasmic substrate-binding domain of active transport proteins; Periplasmic ... |
46-359 |
1.24e-25 |
|
periplasmic substrate-binding domain of active transport proteins; Periplasmic substrate-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic (As) and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Pssm-ID: 380553 [Multi-domain] Cd Length: 342 Bit Score: 106.11 E-value: 1.24e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 46 KIGVLTSLTGKGTDWGKKQKVALEMVEQETNASGGINGSPVKFVIYDTGGENQQAVILTRKLASEDKVLAILGPYFSGEC 125
Cdd:cd06330 1 KIGVITPLSGAAAVYGEPARNGAELAVEEINAAGGILGRKIELVVRDDKGKPDEAVRAARELVLQEGVDFLIGTISSGVA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 126 EVAFPQGNELKIPIISATSAKPGISAANR-PWAFRNTMTDDKMIKVGLPIFLKKYP--------VQNTA----LVADLKD 192
Cdd:cd06330 81 LAVAPVAEELKVLFIATDAATDRLTEENFnPYVFRTSPNTYMDAVAAALYAAKKPPdvkrwagiGPDYEygrdSWAAFKA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 193 AVSTS-----FANGTLPSamkgisglsilndgksitynTGDTDFSAQVTTLKQLGPQALgIGGLY-QEIASLAQEMKRQG 266
Cdd:cd06330 161 ALKKLkpdveVVGELWPK--------------------LGATDYTAYITALLAAKPDGV-FSSLWgGDLVTFVKQAKPYG 219
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 267 L--SIPALGNVGMYSDDLIKQGGDAVEGWVTLS---NFWPTNPDLK--VQNFNKQFsivalknglkDSSPDAFSVSMYDT 339
Cdd:cd06330 220 LfdKTKVVSGLGGGSEVLQALGKEMPEGLIGGGrypFGWPDTPLNKafVEAYRAKY----------GEYPTYWAYEAYAA 289
|
330 340
....*....|....*....|.
gi 974230697 340 AKITLEVIEK-NKITPATPLE 359
Cdd:cd06330 290 VMALKAAIEKaGSTDTDKVIA 310
|
|
| PBP1_ABC_ligand_binding-like |
cd06336 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
46-392 |
2.49e-25 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This group includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, their ligand specificity has not been determined experimentally.
Pssm-ID: 380559 [Multi-domain] Cd Length: 345 Bit Score: 105.39 E-value: 2.49e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 46 KIGVLTSLTGKGTDWGKKQKVALEMVEQETNASGGI--NGSPVKF--VIYDTGGENQQAVILTRKLASEDKVLAILGPYF 121
Cdd:cd06336 1 KIGFLGPLSGPAAAWGLPMLRGLELAADEINAAGGIkvGGKKYKVevVSYDDKYTPAEAVAAARRLVSQDGVKFIFGPGG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 122 SGECEVAFPQGNELKIPIISATSAKPGISAANrPWAFRNTMTDDKMIKVGLPIFLKKYPVQNTALVADlKDAVSTSFANG 201
Cdd:cd06336 81 SAIAAAVQPVTERNKVLLLTAAFSDPILGPDN-PLLFRIPPTPYEYAPPFIKWLKKNGPIKTVALIAP-NDATGKDWAAA 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 202 TLPSAMKgiSGLSILNDgksITYNTGDTDFSAQVTTLKQLGPQALGIGGLYQ-EIASLAQEMKRQGLSIPALGNVGMYSD 280
Cdd:cd06336 159 FVAAWKA--AGGEVVAE---EFYDRGTTDFYPVLTKILALKPDALDLGGSSPgPAGLIIKQARELGFKGPFVSEGGAKAD 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 281 DLIKQ-GGDAVEG--WVTLSNFWP-TNPDLK--VQNFNKQFsivalknglkDSSPDAFSVSMYDTAKITLEVIEKNKitP 354
Cdd:cd06336 234 EILKEvGGEAAEGfiGVLPADDDPiASPGAKafVERYKKKY----------GEPPNSESALFYDAAYILVKAMEKAG--T 301
|
330 340 350
....*....|....*....|....*....|....*....
gi 974230697 355 ATPLEQARTEI-KDGWAKVKDYKGVMGNSTIDGVGDGIM 392
Cdd:cd06336 302 VDDTKKIRAALaMLSPDETLFGKLKWGGKEIYGINHQLL 340
|
|
| PBP1_ABC_ligand_binding-like |
cd06334 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
46-404 |
7.41e-24 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Pssm-ID: 380557 [Multi-domain] Cd Length: 360 Bit Score: 101.55 E-value: 7.41e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 46 KIGVLTSLTGKGTDWGKK----QKVALEMVeqetNASGGINGSPVKFVIYDTGGENQQAVILTRKLASEDKVLAILGpYF 121
Cdd:cd06334 1 KIGLLTDLTGPTADVGKPyaqgVRDYLNYV----NEEGGINGVKIELEECDTGYKVPRAVACYKRLKAQDGVVAILG-WG 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 122 SGECEVAFPQGNELKIPIISA-TSAKPGISAANRPWAFRNTMTDDKMIKVGLpiflkKYPVQN-TALVADLKDAV---ST 196
Cdd:cd06334 76 TGDTEALAPRVAKDKIPYISAsYGRSLADDGKVFPYNFFVGATYSSQARALL-----KYIAQEwGGKLKGPKVAFvyhDS 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 197 SFANGTLPsAMKGIS---GLSILNDgksITYNTGDTDFSAQVTTLKQLGPQALGIGGLYQEIASLAQEMKRQGLSIPALG 273
Cdd:cd06334 151 PFGREPIP-ALKAYAkelGFEVVAE---QVPSPGALDATAQWLRIRRAGPDYVIIQGTGGSVAVIIKDAKRLGLKTKFIG 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 274 NVGMYSDDLIKQGGDAVEG--WVTLSNFWPTNPDLKvqnfnkqfSIVALKNGLKDSSPDAFSVSMY-----DTAKITLEV 346
Cdd:cd06334 227 NIWGGDEDLIKLAGDAAEGyvGVSPFAFGTDDPPGK--------EIVEEVAKKGKGDGPEEVGTVYynrgwATAMLAVEA 298
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 974230697 347 IEKNKitPATPLEQARTEIKDGWAKVKDYK--GVMGNSTIDGvGD--GIMEVYALIVKNGKW 404
Cdd:cd06334 299 IRRAD--KAGGGTGLGNKLKAGLERLKDFDlgGLAPPVTFTP-TDhrGGGVVRIYQWDGGKW 357
|
|
| PBP1_aromatic_compounds-like |
cd06332 |
type 1 periplasmic binding proteins of active transport systems predicted to be involved in ... |
46-395 |
2.13e-22 |
|
type 1 periplasmic binding proteins of active transport systems predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; This group includes the type 1 periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Pssm-ID: 380555 [Multi-domain] Cd Length: 336 Bit Score: 96.90 E-value: 2.13e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 46 KIGVLTSLTGKGTDWGKKQKVALEM-VEQetnASGGINGSPVKFVIYDTGGENQQAVILTRKLASEDKVLAILGPYFSGE 124
Cdd:cd06332 1 KIGLLAPLTGPFAALGEDMVRGFELaLEE---VGGEVAGRKVELVVEDDAGDPDTAVTKARKLVEQDKVDVLIGPLSGDE 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 125 CEVAFPQGNELKIPIISATSAKPGIS-AANRPWAFRNTMTDDKMIKVGLPIFLKKYPVQNTALVADlkdavSTSFANGTL 203
Cdd:cd06332 78 GLAVAPYAKEPGVPFINPVAGADDLTqRAKAPNFFRTSFTGSQWSAPLGDYAYKELGYKKVATIGS-----DYAFGYEQA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 204 PSAMKGI--SGLSILNDgksITYNTGDTDFSAQVTTLKQ---------LGPQALGIGGLYQEIaslaqemkrqGL--SIP 270
Cdd:cd06332 153 AGFKRGFeaAGGEVVQE---IWVPLGTTDFSPYIAQIPSaddavfaflGGADAVRFLKQYREF----------GLkdKIP 219
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 271 ALGNVGMYSDDLIKQGGDAVEGWVTLSNFWPTNPDLKVQNFNKQFsivalKNGLKDsSPDAFSVSMYDTAKITLEVIEKN 350
Cdd:cd06332 220 LIGGGTTVDESVLPAMGDAALGIISASHYAEGLDNPENKKFVAAY-----KKKFGK-LPSLYAAGGYDGAQAILEALEAV 293
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 974230697 351 K--ITPATPLEQARTEIKdgwakvkdYKGVMGNSTIDGVGDGIMEVY 395
Cdd:cd06332 294 GgdVSDKQALAAALRKVK--------FDSPRGPFSFDENRNPVQNVY 332
|
|
| PBP1_ABC_HAAT-like |
cd06344 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
47-389 |
5.44e-22 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of hydrophobic amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of hydrophobic amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380567 [Multi-domain] Cd Length: 332 Bit Score: 95.76 E-value: 5.44e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 47 IGVLTSLTGKGTDWGKKQKVALEmveqETNASGGINGSPVKFVIYDTGGENQQAVILTRKLASEDKVLAILGPYFSGece 126
Cdd:cd06344 4 IGVAWPFAPDGDLFLEGVELAVE----EINAAGGVLGRKIRLVEYDDEASVDKGLAIAQRFADNPDVVAVIGHRSSY--- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 127 VAFP-----QGNELKIPIISATSAKpgISAANRPWAFRNTMTDDKMIKVgLPIFLKKYPVQNTALVADlKDAVSTSFANG 201
Cdd:cd06344 77 VAIPasiiyERAGLLMLSPGATAPK--LTQHGFKYIFRNIPSDEDIARQ-LARYAARQGYKRIVIYYD-DDSYGKGLANA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 202 TLPSAMKgiSGLSILnDGKSitYNTGDTDFSAQVTTLKQLGP-QALGIGGLYQEIASLAQEMKRQGLSIPALGNVGMYSD 280
Cdd:cd06344 153 FEEEARE--LGITIV-DRRS--YSSDEEDFRRLLSKWKALDFfDAIFLAGSMPEGAEFIKQARELGIKVPIIGGDGLDSP 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 281 DLIKQGGDAVEGWVTLSNFWPTNPDLKVQNFNKQFSivaLKNGlkdSSPDAFSVSMYDTAKITLEVIEKNKitPATPLEQ 360
Cdd:cd06344 228 ELIEIAGKAAEGVVVATVFDPDDPRPEVRAFVEAFR---KKYG---REPDVWAAQGYDAVKLLAEAIEKAG--STVPAKI 299
|
330 340
....*....|....*....|....*....
gi 974230697 361 ARTeIKDGwakvKDYKGVMGNSTIDGVGD 389
Cdd:cd06344 300 ASA-LRFL----ENWEGVTGTYSFDANGD 323
|
|
| PBP1_ABC_ligand_binding-like |
cd06326 |
periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to ... |
65-292 |
7.17e-21 |
|
periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This group includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); its ligand specificity has not been determined experimentally, however.
Pssm-ID: 380549 [Multi-domain] Cd Length: 339 Bit Score: 92.61 E-value: 7.17e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 65 KVALEMVeqetNASGGINGSPVKFVIYDTGGENQQAVILTRKLASEDKVLAILGPYFSGECEVAFPQGNELKIPIISATS 144
Cdd:cd06326 25 KAYFDQV----NAAGGINGRKIRLVTLDDGYDPARTVENTRQLIEQDKVVALFGYVGTANVEAVLPLLEEAGVPLVGPLT 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 145 AKPGISAANRPWAF--RNTMTD--DKMIKVGLPIFLKKYPV--QNTALVADLKDAVStsfangtlpSAMKGIsGLSILnd 218
Cdd:cd06326 101 GADSLREPGNPYVFhvRASYADevEKIVRHLATLGLKRIAVvyQDDPFGKEGLAAAE---------AALAAR-GLEPV-- 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 974230697 219 gKSITYNTGDTDFSAQVTTLKQLGPQALGIGGLYQEIASLAQEMKRQGLSIP--ALGNVGmySDDLIKQGGDAVEG 292
Cdd:cd06326 169 -ATAAVARNAADVAAAAAALAAAKPQAVVLIAAGKAAAAFIKALRAAGGAAQfyGLSVVG--AAALAKALGDAARG 241
|
|
| PBP1_ABC_HAAT-like |
cd19985 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
46-273 |
4.57e-20 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of hydrophobic amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of hydrophobic amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380640 [Multi-domain] Cd Length: 321 Bit Score: 90.03 E-value: 4.57e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 46 KIGVLTSLTGKGTDWGKKQKVALEMVEQETNASGGINGSPVKFVIYDTGGENQQAVILTRKLASeDKVLAILGPYFSGEC 125
Cdd:cd19985 1 HIAVVGPMSGKSASKGKSMLRGAELYIDQINAAGGINGKKVKLDVFDDQNDPDAARKAAQIIVS-DKALAVIGHYYSSAS 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 126 EVAFPQGNELKIPIISATSAKPGISaANRPWAFRNTMTDDKMIKVgLPIFLKKYPVQNTALVADLKDAVSTSFANgTLPS 205
Cdd:cd19985 80 IAAGKIYKKAGIPAITPSATADAVT-RDNPWYFRVIFNDSLQGRF-LANYAKKVLKKDKVSIIYEEDSYGKSLAS-VFEA 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 974230697 206 AMKGIsGLSILNDgKSITYNTGDTD--FSAQVTTLKQLGPQALGI--GGLYQEIASLAQEMKRQGLSIPALG 273
Cdd:cd19985 157 TARAL-GLKVLKK-WSFDTDSSQLDqnLDQIVDELKKAPDEPGVIflATHADEGAKLIKKLRDAGLKAPIIG 226
|
|
| PBP1_AmiC-like |
cd06331 |
type 1 periplasmic components of amide-binding protein (AmiC) and the active transport system ... |
46-349 |
1.12e-19 |
|
type 1 periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF); This group includes the type 1 periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Pssm-ID: 380554 [Multi-domain] Cd Length: 333 Bit Score: 89.20 E-value: 1.12e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 46 KIGVLTSLTGKGTDWGKKQKVALEMVEQETNASGGINGSPVKFVIYDTGGENQQAVILTRKLASEDKVLAILGPYFSGEC 125
Cdd:cd06331 1 KIGLLTPLSGPASVYGRAIANGAELAVEEINAAGGVLGRPVELVVEDDASDPATAVAAARRLIQQDKVDAIVGPITSATR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 126 EVAFPQGNELKIPIISATSAKPGISaanRPWAFRNTMTDDKMIKVGLPIFLKKYpVQNTALV-ADLkdavstSFANGTLP 204
Cdd:cd06331 81 NAVAPVAERAKVPLLYPTFYEGGEC---SPYLFCFGEVPNQQLDPLIPWLMEEY-GKKFYLIgSDY------VWPRTMND 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 205 SAMKGI--SGLSILNDgksITYNTGDTDFSAQVTTLKQLGPQAL-----GIGGLyqeiaSLAQEMKRQGLSIPALGnVGM 277
Cdd:cd06331 151 AARRVIeaHGGEVVGE---EYLPLGTTDFSSVIEKIKASGADVVlstlvGADAV-----TFLKQFAAAGLRRKVRI-AAL 221
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 974230697 278 YSDD--LIKQGGDAVEGWVTLSNFW-----PTNPDLkVQNFNKQFsivalknGLKDSSPDAFSVSMYDTAKITLEVIEK 349
Cdd:cd06331 222 LFDEntLAGLGAEAAEGIYSVLSYFqsldtPENKAF-VAAYRKKF-------GEDAPPITSLSEAAYEAVHLYAAAVEK 292
|
|
| PBP1_ABC_ligand_binding-like |
cd06341 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
46-375 |
2.62e-19 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Pssm-ID: 380564 [Multi-domain] Cd Length: 340 Bit Score: 88.13 E-value: 2.62e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 46 KIGVLTSLTGKGTDwgkKQKVALEMVE---QETNASGGINGSPVKFVIYDTGGENQQAVILTRKLASEDKVLAILGPYFS 122
Cdd:cd06341 1 KIGLIYPDTGPGAA---SFSAARAGAEarfGLANAAGGINGRKVEYVWCDDQSDPATNLQAARQLVEDEKVFALVGSSSA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 123 GECeVAFPQGNELKIPIISATSAKPGISAANRPWAF---RNTMTDdkmikvGLPIFLKKYPVQNTALVADLKDAVSTSFA 199
Cdd:cd06341 78 ASG-SANDYLAQAGIPVVGGAGVSVWCFRNMFSNFFslgGGGSTT------TYGQYAAALGGTKAAVVVTDIPAASQQLA 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 200 NGTLPSAMKgiSGLSILNDgksITYNTGDTDFSAQVTTLKQLGPQALGIGGLYQEIASLAQEMKRQGLSIPALGNVGMYS 279
Cdd:cd06341 151 QQLAASLRA--AGVEVVGT---APYAAAAPDYTAVAQAAKAAGADAVVGVLDPDVAARVLKAARAQGLDLKVALSPSGYD 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 280 DDLIKQGGDAVEGWVTLSNFWP---TNPDLKvqnfnkqfsivALKNGLKDSSP------DAFSVSMYDTAKITLEVIEKn 350
Cdd:cd06341 226 PSVLAAYGAALAGVSVASTFLPfeaDTPAVK-----------AYRAAMAKYAPelqdplQQFALSGYIAADLFVRGLEA- 293
|
330 340
....*....|....*....|....*
gi 974230697 351 kitpATPlEQARTEIKDGWAKVKDY 375
Cdd:cd06341 294 ----AGG-CPTRAAFIKALRDVKDY 313
|
|
| PBP1_ABC_ligand_binding-like |
cd19978 |
periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to ... |
45-349 |
3.99e-17 |
|
periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to be involved in the uptake of amino acids, peptides, or inorganic ions; This group includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); its ligand specificity has not been determined experimentally, however.
Pssm-ID: 380633 [Multi-domain] Cd Length: 341 Bit Score: 81.85 E-value: 3.99e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 45 LKIGVLTSLTGKGTDWGKKQKVALEMVEQETNASGGINGSPVKFVIYDTGGENQQAVILTRKLASEDKVLAILGPYFSGE 124
Cdd:cd19978 1 IRLGMSAALSGPAAELGNEMKRGIEAAFNEVNAQGGVNGRKIKLIALDDGYEPDRTVKNTKKLIEEDKVFALIGYVGTPT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 125 CEVAFPQGNELKIPIISATSakpGISAANRPWA-----FRNTMTD--DKMIKVglpiFLKKYPVQNTALVADlKDAVSTS 197
Cdd:cd19978 81 ALAALPLANEKKIPLFGPFT---GAEFLRTPFLpyvfnLRASYADetEALVDY----LVKTLGPKRIAIFYQ-NDAFGLA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 198 FANGTLpSAMKGiSGLSILNDGksiTYNTGDTDFSAQVTTLKQLGPQALGIGGLYQEIASLAQEMKRQGLSIP--ALGNV 275
Cdd:cd19978 153 GLEGAK-KALKK-RGLTPVAEG---SYTRNTLDVEEALAKILKAKPEAIILVGTYAPAAEFIRLARAAGLNPLfaNVSFV 227
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 974230697 276 GmySDDLIKQGGDAVEGwVTLS----NFWPTNPDLkVQNFNKqfsivALKNGLKDSSPDAFSVSMYDTAKITLEVIEK 349
Cdd:cd19978 228 G--SEALALELGDYGEG-VIVSqvvpDPNDSSLPI-VKEYRE-----AMKKYGPNAPPDFVSLEGYLAARLLVEALKK 296
|
|
| PRK15404 |
PRK15404 |
high-affinity branched-chain amino acid ABC transporter substrate-binding protein; |
39-389 |
4.70e-16 |
|
high-affinity branched-chain amino acid ABC transporter substrate-binding protein;
Pssm-ID: 237959 [Multi-domain] Cd Length: 369 Bit Score: 78.91 E-value: 4.70e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 39 QSQIAPLKIGVLTSLTGKGTDWGKKQKVALEMVEQETNASGGINGSPVKFVIYDTGGENQQAVILTRKLASeDKVLAILG 118
Cdd:PRK15404 20 AALADDIKIAIVGPMSGPVAQYGDMEFTGARQAIEDINAKGGIKGDKLEGVEYDDACDPKQAVAVANKVVN-DGIKYVIG 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 119 PYFSGECEVAFPQGNELKIPIISATSAKPGISAANRPWAFRNTMTDDKMIKVGLPIFLKKYPVQNTALVAD-------LK 191
Cdd:PRK15404 99 HLCSSSTQPASDIYEDEGILMITPAATAPELTARGYQLIFRTIGLDSDQGPTAAKYILEKVKPKRIAVLHDkqqygegLA 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 192 DAVSTSFANGTLPSAM-KGIsglsilndgksityNTGDTDFSAQVTTLKQLGPQALGIGGLYQEIASLAQEMKRQGLSIP 270
Cdd:PRK15404 179 RSVKDGLKKAGANVVFfEGI--------------TAGDKDFSALIAKLKKENVDFVYYGGYHPEMGQILRQAREAGLKTQ 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 271 ALGNVGMYSDDLIKQGGDAVEG-WVTLSNFWPTNPDlkvqnfNKqfSIV-ALKNGLKDSSpDAFSVSMYDTAKITLEVIE 348
Cdd:PRK15404 245 FMGPEGVGNKSLSNIAGPASEGmLVTLPKRYDQDPA------NK--AIVdAFKAKKQDPS-GPFVWTTYAAVQSLAAGIN 315
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 974230697 349 KNKITPATPLEQArteikdgwAKVKDYKGVMGNSTIDGVGD 389
Cdd:PRK15404 316 RAGSDDPAKVAKY--------LKANTFDTVIGPLSWDEKGD 348
|
|
| PBP1_RPA0985_benzoate-like |
cd20013 |
type 1 periplasmic binding-protein component of an ABC system (RPA0985), involved in the ... |
46-405 |
1.28e-13 |
|
type 1 periplasmic binding-protein component of an ABC system (RPA0985), involved in the active transport of lignin-derived benzoate derivative compounds, and its close homologs; This group includes RPA0985 from Rhodopseudomonas palustris and its close homologs in other bacteria. Rpa0985 is the periplasmic binding-protein component of an ABC system that is involved in the active transport of lignin-derived benzoate derivative compounds. Members of this group has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP).
Pssm-ID: 380666 [Multi-domain] Cd Length: 356 Bit Score: 71.52 E-value: 1.28e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 46 KIGVLTSLTGKGTDWGKKQKVALEMVEQETnaSGGINGSPVKFVIYDTGGEN-QQAVILTRKLASEDKVLAILGPYFSGE 124
Cdd:cd20013 1 KVGVIGPFSGPFADYGKQFDRGIDLYLKLH--GDKVGGRKVEVIYRDDGGPNpAVAKRLAQELIVRDKVQILIGFGFTPN 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 125 CEVAFPQGNELKIPIISATSAKPGISAANrPWAFRNTMTddkMIKVGLPifLKKYPVQNTA-----LVA------DLKDA 193
Cdd:cd20013 79 ALAVAPVATEAKTPTVIMNAATSSITRKS-PYFVRTSFT---MWQVAYP--MGKWAAKNGIkkaytAVAdyapghDAETA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 194 VSTSF--ANGTlpsamkgISGlsilndgkSITYNTGDTDFSAQVTTLKQLGPQALGI----GGLyqeIASLAQEMKRQGL 267
Cdd:cd20013 153 FKKAFeaAGGK-------IVG--------SIRVPLATPDFAPFMQRIKDAKPDAVFVfvpaGAP---SIGFLKAYAERGL 214
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 268 ---SIPALGNVGMYSDDLIKQGGDAVEGWVTLSNFWPTNPDlkvqNFNKQF-SIVALKNGlKDSSPDAFSVSMYDTAKIT 343
Cdd:cd20013 215 keaGIKLLGTGDATDDDDLPAMGDAALGLITAGHYSAALDS----PENKAFvAAYQKAYG-PDARPDFMAVAAYDGMALI 289
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 974230697 344 LEVIEKN--KITPATPLeqarteikdgwAKVKDYK--GVMGNSTID-GVGDGIMEVYALIVK--NGKWQ 405
Cdd:cd20013 290 YKMIKATggKFDGDKAM-----------AAVKGLKweSPRGPISIDpETRDIVQNVYIRRVEkvDGKLQ 347
|
|
| PBP1_ABC_ligand_binding-like |
cd19979 |
amino acid amide ABC transporter substrate binding protein haat family; This subgroup includes ... |
66-378 |
3.11e-13 |
|
amino acid amide ABC transporter substrate binding protein haat family; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Pssm-ID: 380634 [Multi-domain] Cd Length: 350 Bit Score: 70.33 E-value: 3.11e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 66 VALEmveqETNASGGINGSPVKFVIYDTGGENQQAVILTRKLASEDKVLAILGPYFSgecEVAFPQG---NELKIPIISA 142
Cdd:cd19979 25 LAID----EINAAGGLLGRKLELVAKDHRGNPARGVDNLREFAADPDVLAVFGGLHS---PVLLAELdfiHELKIPYLVP 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 143 TSAKPGISAANRP--WAFRNTMTDDkmiKVGlpIFLKKYPV----QNTALVadlkdAVSTSFANGTLPSAMKGISGLSIL 216
Cdd:cd19979 98 WAAATPITRNGYSpnYIFRLSVDDS---LAG--PFLVEYALkkgcKRPALL-----LENTGWGRSNLKAMTKALAKKGLQ 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 217 NDGkSITYNTGDTDFSAQVTTLKQLGPQALGIGGLYQEIASLAQEMKRQGLSIPALGNVGMYSDDLIKQGGDAvegwvtl 296
Cdd:cd19979 168 PVG-VEWFNWGDTDAKPQLRALKAAGADAILLVANAPEGAAIVKALAALPERLPIISHWGITGGDFPELPREA------- 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 297 snfwPTNPDLKV--------QNFNKQ----FSIVALKNGLKDSSPDAFS----VSMYDTAKITLEVIEKNKITPatpleq 360
Cdd:cd19979 240 ----LSKIDLRFiqtfsffdANQSPRgkqvLARYKRRYPVEDPESDIPApvgfAHAYDLTHLLALAIEQAGSTD------ 309
|
330
....*....|....*...
gi 974230697 361 aRTEIKDGWAKVKDYKGV 378
Cdd:cd19979 310 -RAAVRAALELLPPHEGL 326
|
|
| PBP1_RPA0668_benzoate-like |
cd20014 |
type 1 periplasmic binding-protein component of an ABC system (RPA0668), involved in in the ... |
46-349 |
1.30e-12 |
|
type 1 periplasmic binding-protein component of an ABC system (RPA0668), involved in in the active transport of lignin-derived benzoate derivative compounds, and its close homologs; This group includes RPA0668 from Rhodopseudomonas palustris and its close homologs in other bacteria. Rpa0668 is the periplasmic binding-protein component of an ABC system that is involved in the active transport of lignin-derived benzoate derivative compounds. Members of this group has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP).
Pssm-ID: 380667 [Multi-domain] Cd Length: 346 Bit Score: 68.42 E-value: 1.30e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 46 KIGVLTSLTGKGTDWGKKQKVALEMVEQETNasGGINGSPVKFVIYDTGGENQQAVILTRKLASEDKVLAILGPYFSGEC 125
Cdd:cd20014 1 KIGLLLPYSGVYAALGEDIRNGFQLYLDEHG--GKLGGRPIELVKEDDEADPDVALQKARKLIEQDKVDVLVGPVSSGVA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 126 EVAFPQGNELKIPIISATSAKPGISAANR-PWAFRNTMTddkMIKVGLPifLKKYPVQN---TALVADLKDAVSTSFANG 201
Cdd:cd20014 79 LAIRDVVEQAKVPLIVANAGANALTRAACsPYIFRTSFS---NWQLGYA--LGKYAAENvgkTVVTIASDYAAGREVVAG 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 202 TLPSAMKgiSGLSILNDGKSITYNTgdTDFSAQVTTLKQLGPQAL--GIGGlyQEIASLAQEMKRQGL--SIPALGNVGM 277
Cdd:cd20014 154 FKEGFEA--AGGKVVGEIWTPLGTT--TDFSPYLTQIAASGPDAVyaFFAG--ADAVRFVKQYAEFGLkgKIPLYGPGFL 227
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 974230697 278 YSDDLIKQGGDAVEGWVTLSNFWPT--NPDLK--VQNFNKQFSIValknglkdssPDAFSVSMYDTAKITLEVIEK 349
Cdd:cd20014 228 TDEDVLPALGEAAEGIITVLHYAPTldNPANRafVAAYQAKYGRL----------PDVYAVQGYDAAQVIDAALEA 293
|
|
| PBP1_amide_urea_BP-like |
cd06356 |
periplasmic component (FmdD) of an active transport system for short-chain amides and urea ... |
46-138 |
2.22e-12 |
|
periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF); This group includes the type 1 periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Pssm-ID: 380579 [Multi-domain] Cd Length: 334 Bit Score: 67.71 E-value: 2.22e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 46 KIGVLTSLTGKGTDWGKKQKVALEMVEQETNASGGINGSPVKFVIYDTGGENQQAVILTRKLASEDKVLAILGPYFSGEC 125
Cdd:cd06356 1 KIGSIFDLSGGLNIYGKPMVHAMKLAVEEINAAGGLLGRQIELVAYDTQSDMQKYTQYAQQLILRDKVDVVFGGITSASR 80
|
90
....*....|...
gi 974230697 126 EVAFPQGNELKIP 138
Cdd:cd06356 81 EAIRPILRRNKIL 93
|
|
| PBP1_YraM_LppC_lipoprotein-like |
cd06339 |
periplasmic binding component of lipoprotein LppC, an immunodominant antigen; This subgroup ... |
46-315 |
4.94e-10 |
|
periplasmic binding component of lipoprotein LppC, an immunodominant antigen; This subgroup includes periplasmic binding component of lipoprotein LppC, an immunodominant antigen, whose molecular function is not characterized. Members of this subgroup are predicted to be involved in transport of lipid compounds, and they are sequence similar to the family of ABC-type hydrophobic amino acid transporters (HAAT).
Pssm-ID: 380562 [Multi-domain] Cd Length: 331 Bit Score: 60.36 E-value: 4.94e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 46 KIGVLTSLTGKGTDWGKKQKVALEMveqetnASGGINGSPVKFVIYDTGGeNQQAVILTRKlASEDKVLAILGPYFSGEC 125
Cdd:cd06339 1 RIALLLPLSGPYAAAGQAIRDGIEL------ALFDAGGSRPELRVYDTGG-PEGAAAAYQQ-AVAEGADLIIGPLLKSSV 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 126 EVAFPQGNELKIPIISATSAKpgiSAANRPWAFRNTMTD--------DKMIKVGLPIFLkkypvqntALVAD--LKDAVS 195
Cdd:cd06339 73 AALAAAAQALGVPVLALNNDE---SATAGPGLFQFGLSPedearqaaRYAVQQGLRRFA--------VLAPDnaYGQRVA 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 196 TSFANgtlpsAMKGiSGLSILndgKSITYNTGDTDFSAQVTTLKQL----------------------GPQALGIGGLYQ 253
Cdd:cd06339 142 NAFRE-----AWQA-LGGTVV---AVESYDPDETDFSAAIRRLLGVdqsearirqlgellefeprrrqDFDAIFLPAGPE 212
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 974230697 254 EIASLAQEMKRQGLS-IPALGNVGMYSDDLIKQGGDAVEG-WVTlSNFWPTNPDLKVQNFNKQF 315
Cdd:cd06339 213 QARLIAPQLAFYGAGdVPLLGTSLWYSGKLNLLRDPDLNGaWFA-DPPWLLSPRAFPLRYRLAY 275
|
|
| PBP1_Nba-like |
cd06359 |
type 1 periplasmic binding component of active transport systems predicted to be involved in ... |
46-340 |
1.96e-09 |
|
type 1 periplasmic binding component of active transport systems predicted to be involved in 2-nitrobenzoic acid degradation pathway; This group includes the type 1 periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Pssm-ID: 380582 [Multi-domain] Cd Length: 333 Bit Score: 58.42 E-value: 1.96e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 46 KIGVLTSLTGKGTDWGKKQKVALEM-VEQEtnaSGGINGSPVKFVIYDTGGENQQAVILTRKLASEDKVLAILGPYFSGE 124
Cdd:cd06359 1 KIGFITTLSGPAAVLGQDMRDGFNLaLEQL---GGKLGGLPVEVVVEDDQLKPDVAKQAAERLIERDKVDFVTGIIFSNV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 125 CEVAFPQGNELKIPIISAtSAKPGISAANR--PWAFRNTMTDDKM-IKVGLpiFLKKYPVQNTALVA----DLKDAVStS 197
Cdd:cd06359 78 MLAVVKPVVDSKVFYISA-NAGPSDLAGKGcnPNFFVTSWQNDQLhEAAGK--YANDKGYKRVYLLApnyqAGKDALA-G 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 198 FANgtlpsAMKG-ISGlsilndgksITYNT-GDTDFSAQVTTLKQLGPQALGI---GGLYqeiASLAQEMKRQGLS--IP 270
Cdd:cd06359 154 FKR-----TYKGeVVG---------EIYTPlGQLDFSAELAQIRAAKPDAVFAfypGGMG---VNFVKQYAQAGLKkkIP 216
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 974230697 271 ALGNVGMYSDDLIKQGGDAVEGwVTLSNFWptNPDLKVQNfNKQFsiVA---LKNGlkdSSPDAFSVSMYDTA 340
Cdd:cd06359 217 LYTVGTLDDEDLLPAMGDAALG-VLSVSQW--SPDLDNPE-NKRF--VAafrKKYG---RPPSNYAAQGYDAA 280
|
|
| ANF_receptor |
pfam01094 |
Receptor family ligand binding region; This family includes extracellular ligand binding ... |
67-398 |
4.22e-09 |
|
Receptor family ligand binding region; This family includes extracellular ligand binding domains of a wide range of receptors. This family also includes the bacterial amino acid binding proteins of known structure.
Pssm-ID: 460062 [Multi-domain] Cd Length: 347 Bit Score: 57.78 E-value: 4.22e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 67 ALEMVEQETNASGGIN-GSPVKFVIYDTGGENQQAVILTRKLaSEDKVLAILGPYFSGECEVAFPQGNELKIPIISATSA 145
Cdd:pfam01094 5 AVRLAVEDINADPGLLpGTKLEYIILDTCCDPSLALAAALDL-LKGEVVAIIGPSCSSVASAVASLANEWKVPLISYGST 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 146 KPGISAANRPWAFRNTMTDDKMIKVGLPIFLKKYPVQNTALVADlkdavSTSFANGTLPSAMKGISGLSI-LNDGKSITY 224
Cdd:pfam01094 84 SPALSDLNRYPTFLRTTPSDTSQADAIVDILKHFGWKRVALIYS-----DDDYGESGLQALEDALRERGIrVAYKAVIPP 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 225 NTGDTDFSAQVTTLKQLGPQALGIGGLYQEIASLAQEMKRQGLSIP-----ALGNVGMYSDDLIKQGGDAVEGWVTLSNF 299
Cdd:pfam01094 159 AQDDDEIARKLLKEVKSRARVIVVCCSSETARRLLKAARELGMMGEgyvwiATDGLTTSLVILNPSTLEAAGGVLGFRLH 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 300 WPTNPdlKVQNFNKQFSIVALKNGLKDS-SPDAFSVSMYDTAKITLEVIEKNKITPATPLEQARTEIKDGWAKVKDY--- 375
Cdd:pfam01094 239 PPDSP--EFSEFFWEKLSDEKELYENLGgLPVSYGALAYDAVYLLAHALHNLLRDDKPGRACGALGPWNGGQKLLRYlkn 316
|
330 340
....*....|....*....|....*.
gi 974230697 376 ---KGVMGNSTIDGVGDGIMEVYALI 398
Cdd:pfam01094 317 vnfTGLTGNVQFDENGDRINPDYDIL 342
|
|
| PBP1_SBP-like |
cd06328 |
periplasmic substrate-binding domain of active transport proteins (substrate binding proteins ... |
46-308 |
6.11e-08 |
|
periplasmic substrate-binding domain of active transport proteins (substrate binding proteins or SBPs); Periplasmic substrate-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Pssm-ID: 380551 [Multi-domain] Cd Length: 336 Bit Score: 53.84 E-value: 6.11e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 46 KIGVLTSLTGKGTDWGKKQKVALEM-VEQETNASGGINGSPVKFVIYDTGGENQQAVILTRKLASEDKVLAILGPYFSGE 124
Cdd:cd06328 1 KIGVITSLTGPLAAYGKQTERGFELgLEYATDGTMEVDGRKIEVIVKDDQGDPDTAKAAATELIGDDGVDILVGTVSSAV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 125 CEVAFPQGNELKIPIISATSAKPGISAAN-RPWAFR---NTMTDDKmikvGLPIFLKKYPVQNTALVadlkdAVSTSFAN 200
Cdd:cd06328 81 ALALAPVAEQNKKILIVGPAAADSITGENwNKYTFRtsrNSWQDAI----AGAKALADPLGKSVAFL-----AQDYAFGQ 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 201 GTLpSAMKGISGlsiLNDGKSIT---YNTGDTDFSAQVTTLKQLGPQALGIGGLYQEIASLAQEMKRQGL--------SI 269
Cdd:cd06328 152 DGV-AAFKKALE---AKGGKIVGeelVPVTTTDFTPYLQRILDAKPDVLFVAWAGTGALTLWQQLADQGVlddikvvtGG 227
|
250 260 270
....*....|....*....|....*....|....*....
gi 974230697 270 PALGNVGMYSDDLIKQGGdavegwvtLSNFWPTNPDLKV 308
Cdd:cd06328 228 PDIATLAALGDALPGIEG--------LTYYYYGLPKNPV 258
|
|
| PBP1_AmiC |
cd06357 |
periplasmic binding domain of amidase (AmiC) that belongs to the type 1 periplasmic binding ... |
46-122 |
6.75e-08 |
|
periplasmic binding domain of amidase (AmiC) that belongs to the type 1 periplasmic binding fold protein family; This group includes the periplasmic binding domain of amidase (AmiC) that belongs to the type 1 periplasmic binding fold protein family. AmiC controls expression of the amidase operon by the ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon are induced.
Pssm-ID: 380580 [Multi-domain] Cd Length: 357 Bit Score: 54.12 E-value: 6.75e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 974230697 46 KIGVLTSLTGKGTDWGKKQKVALEMVEQETNASGGINGSPVKFVIYDTGGENQQAVILTRKLASEDKVLAILGPYFS 122
Cdd:cd06357 1 RVGLLFSQTGVTAIIEQSMLNGALLAIEEINAAGGVNGRPIEPVVYDPASDPDRYRELAERLLLEDGVRHIFGCYTS 77
|
|
| PBP1_alkylbenzenes-like |
cd06360 |
type 1 periplasmic binding component of active transport systems predicted be involved in ... |
46-405 |
1.01e-07 |
|
type 1 periplasmic binding component of active transport systems predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; This group includes the type 1 periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Pssm-ID: 380583 [Multi-domain] Cd Length: 357 Bit Score: 53.45 E-value: 1.01e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 46 KIGVLTSLTGKGTDWGKKQKVALEMVEQEtnASGGINGSPVKFVIYDTGGENQQAVILTRKLASEDKVLAILGPYFSGEC 125
Cdd:cd06360 1 KIGVLLPLTGPLAVNGEDVRDGFELYFDE--IGNQVAGRKIELIVEDDEGKPDVGLTKARKLVERDKVHVLAGIVSSAVA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 126 EVAFPQGNELKIPIISATSAKPGISAANR-PWAFRNTMTDDKMIKVGLPIFLKKYPVQNTALVAdlKDAVSTSFANGTLP 204
Cdd:cd06360 79 YAVRDYVVEQKIPLVISNAGAAPLTQELAsPYIFRTSFSNGQYDAPFGQYAYEKLGYRRIAVMA--SDYAAGHEQAGAFA 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 205 SAMKGISGLSIlndgKSITYNTGDTDFSAQVTTLKQLGPQALGIgglyQEIASLAQEMKRQ----GL--SIPALGNVGMY 278
Cdd:cd06360 157 RTFKQAGGKVV----QEIYPPLGTADFAPYLARIQQDAADAVWA----FFAGADAIRFVKQydeyGLkgKLPLVGIGGLV 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 279 SDDLIKQGGDAVEGWVTLSNFWPTN--PDLK--VQNFNKQFsivalknglkDSSPDAFSVSMYDTAKITLEVIE--KNKI 352
Cdd:cd06360 229 DDAILPEQGDAALGIVSYLHYSAALdtPENKafVQAYRKKY----------GRDPGLYAEGGYVAARAIAEALEavKGNV 298
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 974230697 353 TPATPLEQARteikdgwAKVKdYKGVMGNSTIDGVGDGIMEVYALIVK--NGKWQ 405
Cdd:cd06360 299 EDKEAFLEAL-------RKVR-FEAPRGPFRFDPYQQAVVTTYIRRVEkvDGKLV 345
|
|
| Peripla_BP_5 |
pfam13433 |
Periplasmic binding protein domain; This domain is found in a variety of bacterial periplasmic ... |
45-122 |
4.60e-07 |
|
Periplasmic binding protein domain; This domain is found in a variety of bacterial periplasmic binding proteins.
Pssm-ID: 463875 [Multi-domain] Cd Length: 363 Bit Score: 51.44 E-value: 4.60e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 974230697 45 LKIGVLTSLTGKGTDWGKKQKVALEMVEQETNASGGINGSPVKFVIYDTGGENQQAVILTRKLASEDKVLAILGPYFS 122
Cdd:pfam13433 1 IKVGVLHSLTGTMAISERSLKDATLMAIEEINAAGGVLGRKIEPVVVDPASDWPLFAEKARKLIDQDKVRVVFGCWTS 78
|
|
| PBP1_GABAb_receptor_plant |
cd19990 |
periplasmic ligand-binding domain of Arabidopsis thaliana glutamate receptors and its close ... |
46-147 |
7.00e-07 |
|
periplasmic ligand-binding domain of Arabidopsis thaliana glutamate receptors and its close homologs in other plants; This group includes the ligand-binding domain of Arabidopsis thaliana glutamate receptors, which have sequence similarity with animal ionotropic glutamate receptor and its close homologs in other plants. The ligand-binding domain of GABAb receptors are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb receptor or GABAbR). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha-i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Pssm-ID: 380645 [Multi-domain] Cd Length: 373 Bit Score: 50.69 E-value: 7.00e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 46 KIGVLTSLTgkgTDWGKKQKVALEMVEQETNASGgiNGSPVKFVIY--DTGGENQQAVILTRKLASEDKVLAILGPYFSG 123
Cdd:cd19990 1 KIGAILDLN---SRVGKEAKVAIEMAVSDFNSDS--SSYGTKLVLHvrDSKGDPLQAASAALDLIKNKKVEAIIGPQTSE 75
|
90 100
....*....|....*....|....
gi 974230697 124 ECEVAFPQGNELKIPIISATSAKP 147
Cdd:cd19990 76 EASFVAELGNKAQVPIISFSATSP 99
|
|
| PBP1_FmdD-like |
cd06355 |
periplasmic component (FmdD) of an active transport system for short-chain amides and urea ... |
46-118 |
1.23e-06 |
|
periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF); This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type 1 periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Pssm-ID: 380578 [Multi-domain] Cd Length: 347 Bit Score: 49.88 E-value: 1.23e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 974230697 46 KIGVLTSLTGKGTDWGKKQKVALEMVEQETNASGGINGSPVKFVIYDTGGENQQAVILTRKLASEDKVLAILG 118
Cdd:cd06355 1 KVGILHSLSGTMAISERPLVDATLLAIDEINAAGGLLGRKIEPVIEDGASDWPTFAEKAEKLITQDKVAVIFG 73
|
|
| PBP1_NHase |
cd06358 |
type 1 periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively ... |
46-118 |
1.85e-06 |
|
type 1 periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides; This group includes the type 1 periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified into two subgroups: ferric NHases and cobalt NHases.
Pssm-ID: 380581 [Multi-domain] Cd Length: 333 Bit Score: 49.51 E-value: 1.85e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 974230697 46 KIGVLTSLTGKGTDWGKKQKVALEMVEQETNASGGINGSPVKFVIYDTGGENQQAVILTRKLASEDKVLAILG 118
Cdd:cd06358 1 RIGLLIPLSGPAGLWGPSCEACAELAAAEINAAGGILGREVELVLIDAGGPPAEVAAAARRLVDDGAVDAIVG 73
|
|
| PBP1_NPR_GC-like |
cd06352 |
ligand-binding domain of membrane guanylyl-cyclase receptors; Ligand-binding domain of ... |
46-403 |
2.33e-06 |
|
ligand-binding domain of membrane guanylyl-cyclase receptors; Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type 1 periplasmic binding fold protein family.
Pssm-ID: 380575 [Multi-domain] Cd Length: 391 Bit Score: 49.28 E-value: 2.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 46 KIGVLTSLTGKGTDWGKKQ-----KVALEMVEQETNASGGINgspVKFVIYDTGGENQQAVILTRKLASEDKVLAILGPY 120
Cdd:cd06352 1 KVGVLAPSNSQSLPVGYARsapaiDIAIERINSEGLLLPGFN---FEFTYRDSCCDESEAVGAAADLIYKRNVDVFIGPA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 121 FSGECEVAFPQGNELKIPIISATSAKPGISAANRPWAFRNTMTDDKMIKVGLPIFLKKYPVQNTALVADLKDAVSTSFAN 200
Cdd:cd06352 78 CSAAADAVGRLATYWNIPIITWGAVSASFLDKSRYPTLTRTSPNSLSLAEALLALLKQFNWKRAAIIYSDDDSKCFSIAN 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 201 GTLpSAMKGISGLSILndGKSITYNTGDTDFSAQVTTLKQ------------------LGPQALG-IGGLYQEIASlaqE 261
Cdd:cd06352 158 DLE-DALNQEDNLTIS--YYEFVEVNSDSDYSSILQEAKKrariivlcfdsetvrqfmLAAHDLGmTNGEYVFIFI---E 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 262 MKRQGLS--IPALGNVGMYSDDLIKQggdAVEGWVTLSNFWPTNPDLKvqNFNKQFSIVALKN-----GLKDSSPDAFSV 334
Cdd:cd06352 232 LFKDGFGgnSTDGWERNDGRDEDAKQ---AYESLLVISLSRPSNPEYD--NFSKEVKARAKEPpfycyDASEEEVSPYAA 306
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 335 SMYDT----AKITLEVIEKNKItpatpleqarteIKDGWAKVKD-----YKGVMGNSTIDGVGDG--IMEVYALIVKNGK 403
Cdd:cd06352 307 ALYDAvylyALALNETLAEGGN------------YRNGTAIAQRmwnrtFQGITGPVTIDSNGDRdpDYALLDLDPSTGK 374
|
|
| PBP1_glutamate_receptors-like |
cd06269 |
ligand-binding domain of family C G-protein couples receptors (GPCRs), membrane bound guanylyl ... |
46-338 |
2.94e-05 |
|
ligand-binding domain of family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as natriuretic peptide receptors (NPRs), and N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of ionotropic glutamate rece; This CD represents the ligand-binding domain of the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine-isoleucine-valine binding protein (LIVBP)-like domain of the ionotropic glutamate receptors, all of which are structurally similar and related to the periplasmic-binding fold type 1 family. The family C GPCRs consists of metabotropic glutamate receptor (mGluR), a calcium-sensing receptor (CaSR), gamma-aminobutyric acid receptor (GABAbR), the promiscuous L-alpha-amino acid receptor GPR6A, families of taste and pheromone receptors, and orphan receptors. Truncated splicing variants of the orphan receptors are not included in this CD. The family C GPCRs are activated by endogenous agonists such as amino acids, ions, and sugar based molecules. Their amino terminal ligand-binding region is homologous to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). The ionotropic glutamate receptors (iGluRs) have an integral ion channel and are subdivided into three major groups based on their pharmacology and structural similarities: NMDA receptors, AMPA receptors, and kainate receptors. The family of membrane bound guanylyl cyclases is further divided into three subfamilies: the ANP receptor (GC-A)/C-type natriuretic peptide receptor (GC-B), the heat-stable enterotoxin receptor (GC-C)/sensory organ specific membrane GCs such as retinal receptors (GC-E, GC-F), and olfactory receptors (GC-D and GC-G).
Pssm-ID: 380493 [Multi-domain] Cd Length: 332 Bit Score: 45.49 E-value: 2.94e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 46 KIGVLTSLTGKGTDWGKKQKVALEMVEQETNASGGINGSPVKFVIYDTGGENQQAVILTRKLASEDKVLAILGPyfsGEC 125
Cdd:cd06269 1 TIGALLPVHDYLESGAKVLPAFELALSDVNSRPDLLPKTTLGLAIRDSECNPTQALLSACDLLAAAKVVAILGP---GCS 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 126 EVAFPQGNEL---KIPIISATSAKPGISAANR-PWAFRNTMTDDKMIKVGLPIFlKKYPVQNTALVADlkdavSTSFANG 201
Cdd:cd06269 78 ASAAPVANLArhwDIPVLSYGATAPGLSDKSRyAYFLRTVPPDSKQADAMLALV-RRLGWNKVVLIYS-----DDEYGEF 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 202 TLPSAMKGISGLSILNDGKSITYNTGDTDFSAQVTTLKQLGPQALGIGGLYQEIASLAQEMKRQGLSIP--ALGNVGMYS 279
Cdd:cd06269 152 GLEGLEELFQEKGGLITSRQSFDENKDDDLTKLLRNLRDTEARVIILLASPDTARSLMLEAKRLDMTSKdyVWFVIDGEA 231
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 974230697 280 DDLIKQGG---DAVEGWVTLSNFWPTNPD-LKVQNFNKQFSIVALKNGLKDSSPDAFSVSMYD 338
Cdd:cd06269 232 SSSDEHGDearQAAEGAITVTLIFPVVKEfLKFSMELKLKSSKRKQGLNEEYELNNFAAFFYD 294
|
|
| PBP1_SBP-like |
cd06329 |
periplasmic substrate-binding domain of active transport proteins (substrate binding proteins ... |
46-349 |
6.39e-05 |
|
periplasmic substrate-binding domain of active transport proteins (substrate binding proteins or SBPs); Periplasmic substrate-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Pssm-ID: 380552 [Multi-domain] Cd Length: 343 Bit Score: 44.57 E-value: 6.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 46 KIGVLTSLTGKGTDWGKKQKVALEMVEQETNASGGINGSPVKFVIYDTGGENQQAVILTRKLASeDKVLAIL---GPYFS 122
Cdd:cd06329 1 KIAFIDPLSGPFASVGEIYLKGLQFAIEEINAGGGLLGRKIELVPFDNKGSPQEALIQLKKAID-QGIRFVLqgnSSAVA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 123 GECEVAFPQGNEL----KIPIISATSAKPGISAAN-RPWAFRnTMTDDKMIKVGLPIFLKKYPvqntalvaDLKDAVS-- 195
Cdd:cd06329 80 GALIDAIEKHNQRnpdkRVLFLNYGAEAPELTGAKcSFWHFR-FDANADMKMAALADYMKKDG--------SIKKVYLin 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 196 --TSFANGTLPSAMKGIS----GLSILND-----GKSityntgdTDFSAQVTTLKQLGPQALGIGGLYQEIASLAQEMKR 264
Cdd:cd06329 151 qdYSFGRDVAAAAKKNLKkkrpDIEIVGEdlhplGKV-------KDFSPYIAKIKASGADTVITGNWGNDLTLLMKAARD 223
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 265 QGLSIPaLGNVGMYSDDLIKQGGDAVEGWVTLSNFWPTNPDLK-----VQNFNKQFSivalknglkdSSPDAFSVSMYDT 339
Cdd:cd06329 224 SGLKAP-FYTYYADGPGAPAAIGEAGVGRLVAVAYWHPNPKTPelekfAEAFRAKYG----------RYPDFNIGRTYMG 292
|
330
....*....|
gi 974230697 340 AKITLEVIEK 349
Cdd:cd06329 293 VEMLAAAIKK 302
|
|
| PBP1_ABC_ligand_binding-like |
cd06337 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
46-304 |
6.14e-04 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Pssm-ID: 380560 [Multi-domain] Cd Length: 354 Bit Score: 41.52 E-value: 6.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 46 KIGVLTSLTG------KGTDWGKKQkvaleMVEQETNASGGINGS--PVKFVIYDTGGENQQAVILTRKLASEDKV---L 114
Cdd:cd06337 1 KIGRVSPLTGplaafgEADPWVLEQ-----IREAFADGGIKVGGKkyPVEIVVRDSQSDPNRAGEAARDLILRDKVdlmL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 115 AILGPyfsgecEVAFP---QGNELKIPIISATS-------AKPGISAANRPWAFRNTMTDDKMIKVGLPIFlkkYPVQNT 184
Cdd:cd06337 76 ASGTP------DTVNPvadQCEANGVPCISTDApwqawffGRGGDPAKGFKWTFHFFWGLEDIAANFLGMW---DQVPTN 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974230697 185 ALVADL--KDAVSTSFANGTLPSAMKGisGLSILNDGKsitYNTGDTDFSAQVTTLKQLGPQALgIGGLY-QEIASLAQE 261
Cdd:cd06337 147 KVVGLLwpNDPDGTAFADAFLGLPAAA--GYTLVDPGR---FPPGTDDFSSIINAFKKAGVEIV-TGVMIpPDFATFWRQ 220
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 974230697 262 MKRQGLS--IPALGNVGMYSDDlIKQGGDAVEGwVTLSNFW-PTNP 304
Cdd:cd06337 221 AAQQGFKpkVVTIGKALLFPSA-VAALGDLGDG-LSTEVWWsPAHP 264
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