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Conserved domains on  [gi|982696418|gb|KWT15424|]
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hypothetical protein AL047_08165 [Pseudomonas syringae pv. broussonetiae]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF6388 super family cl45313
Family of unknown function (DUF6388); This entry represents a member of a biosynthetic gene ...
 3-106 6.59e-20

Family of unknown function (DUF6388); This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0001859) is described by MIBiG as an example of the following biosynthetic class, other (unspecified), in particular fosfomycin biosynthetic gene cluster from Pseudomonas syringae. This family is predominantly found in proteobacteria. Some members of this family have been putatively identified as DNA repair proteins.


The actual alignment was detected with superfamily member pfam19925:

Pssm-ID: 437757  Cd Length: 107  Bit Score: 77.42  E-value: 6.59e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 982696418    3 IENRYHAARNKFFGENPGALAQIESVKPAVIEACEMTVDEYREQQRIVVFAEAARSRGLEVDEFVIRLVAESPEQAKEWR 82
Cdd:pfam19925   4 PEEYYAAALDRFLEAHPQLLAEIDELSPLEAQAAGMSLAQLRAQQADRAFEAFAREKGLDGWEFALQLIAESPEEVAAQR 83

                          90       100
                  ....*....|....*....|....
gi 982696418   83 LDQHRKIADALSIDWDEYKQLNRI 106
Cdd:pfam19925  84 LEVHREVAEALGMSWEEYCQKNEL 107
 
Name Accession Description Interval E-value
DUF6388 pfam19925
Family of unknown function (DUF6388); This entry represents a member of a biosynthetic gene ...
 3-106 6.59e-20

Family of unknown function (DUF6388); This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0001859) is described by MIBiG as an example of the following biosynthetic class, other (unspecified), in particular fosfomycin biosynthetic gene cluster from Pseudomonas syringae. This family is predominantly found in proteobacteria. Some members of this family have been putatively identified as DNA repair proteins.


Pssm-ID: 437757  Cd Length: 107  Bit Score: 77.42  E-value: 6.59e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 982696418    3 IENRYHAARNKFFGENPGALAQIESVKPAVIEACEMTVDEYREQQRIVVFAEAARSRGLEVDEFVIRLVAESPEQAKEWR 82
Cdd:pfam19925   4 PEEYYAAALDRFLEAHPQLLAEIDELSPLEAQAAGMSLAQLRAQQADRAFEAFAREKGLDGWEFALQLIAESPEEVAAQR 83

                          90       100
                  ....*....|....*....|....
gi 982696418   83 LDQHRKIADALSIDWDEYKQLNRI 106
Cdd:pfam19925  84 LEVHREVAEALGMSWEEYCQKNEL 107
 
Name Accession Description Interval E-value
DUF6388 pfam19925
Family of unknown function (DUF6388); This entry represents a member of a biosynthetic gene ...
 3-106 6.59e-20

Family of unknown function (DUF6388); This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0001859) is described by MIBiG as an example of the following biosynthetic class, other (unspecified), in particular fosfomycin biosynthetic gene cluster from Pseudomonas syringae. This family is predominantly found in proteobacteria. Some members of this family have been putatively identified as DNA repair proteins.


Pssm-ID: 437757  Cd Length: 107  Bit Score: 77.42  E-value: 6.59e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 982696418    3 IENRYHAARNKFFGENPGALAQIESVKPAVIEACEMTVDEYREQQRIVVFAEAARSRGLEVDEFVIRLVAESPEQAKEWR 82
Cdd:pfam19925   4 PEEYYAAALDRFLEAHPQLLAEIDELSPLEAQAAGMSLAQLRAQQADRAFEAFAREKGLDGWEFALQLIAESPEEVAAQR 83

                          90       100
                  ....*....|....*....|....
gi 982696418   83 LDQHRKIADALSIDWDEYKQLNRI 106
Cdd:pfam19925  84 LEVHREVAEALGMSWEEYCQKNEL 107
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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