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Conserved domains on  [gi|996646468|gb|KXH65446|]
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hypothetical protein CNYM01_09956 [Colletotrichum nymphaeae SA-01]

Protein Classification

KCH domain-containing protein( domain architecture ID 11246454)

KCH domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
KCH pfam16944
Fungal potassium channel; KHC is a family of fungal proteins carrying three transmembrane ...
 18-272 1.11e-155

Fungal potassium channel; KHC is a family of fungal proteins carrying three transmembrane domains. It is a member of the fungal potassium channel family of transporters, and includes a pair of homologous sequences that localize to distinct zones of the yeast plasma membrane and are induced during the response to mating pheromones. Together KCH1 and KCH2 promote low-affinity K+ uptake and are essential for K+-dependent activation of HACS - a high-affinity Ca2+ influx system that activates calcineurin and is essential for cell survival - in S. cerevisiae cells responding to mating pheromones.


:

Pssm-ID: 435670  Cd Length: 251  Bit Score: 446.96  E-value: 1.11e-155
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996646468   18 KWDYINLNDFKSRGCLTPFAYFYLWLMLIISLAVYGVDMFTAINLLAFDRWSSEIDPAIDFKISKWIFSISIIASFVNLA 97
Cdd:pfam16944   1 KFDFIDLDDFKNTSCWTPFSYIFLWILLLLSFAVYASDIYTAVNLLAFNRWSSQIKPAIPFKISKWIFSGCIIFSFVLLA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996646468   98 FEHFRAHRVMKRGNVAECYLDTIAVRLESIRfgkgqGWKRFLVFAELTKSKKGAEYIALFTYFSFQSWIRVLVCSGPRQV 177
Cdd:pfam16944  81 YEWIRAIRIYRTRNIALAYLNNLARRLYSIR-----GYRRFCVFAEITKSKKGFDYIAFFTYFEFKSWKRLLLADGPRQV 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996646468  178 VNALTLKSVYDAKLAVHEVSVEGSLLGFFDKIKTLATEDYQQALILSGMVFTLLIWVFSALYLIMAVLFYVFFLFHWIPK 257
Cdd:pfam16944 156 INGLTLYSVLLAKLSPGGENALESFSGFFSNIKAIAETNHREAVILSFMLFSFVIWVFSFLKLILAMILYIPFLWHIIPR 235

                         250
                  ....*....|....*
gi 996646468  258 ADGGLSGYCERKVTK 272
Cdd:pfam16944 236 GDGGLKEYCCRKVNK 250
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 292-593 4.11e-06

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 50.32  E-value: 4.11e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996646468  292 SKRKAEMKAAKKNGEKMPLERQATLPTLPNVGDPDKLAEMPMFGRNDTFATLPAYESRPGTPGsielnsmdqkrPLPSRM 371
Cdd:PHA03247 2662 SRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPG-----------PAAARQ 2730

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996646468  372 GTTTSTASYSSRAPLVGGAADFGYQRSGSP-APSLPPmdlNNYPPQRPGTSNSQRSFRPQISHVQTNSQSSLRGGFSESP 450
Cdd:PHA03247 2731 ASPALPAAPAPPAVPAGPATPGGPARPARPpTTAGPP---APAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADP 2807

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996646468  451 STYSPDTMPPFPPPVRSNTG--------RSVESFRSQRQNTYQSDRGTPAPRGtydDYSSQSNGRASPAPSAYSGRAPAP 522
Cdd:PHA03247 2808 PAAVLAPAAALPPAASPAGPlppptsaqPTAPPPPPGPPPPSLPLGGSVAPGG---DVRRRPPSRSPAAKPAAPARPPVR 2884

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 996646468  523 MPRGPGPLNNTPYQAYQPFNPQRSAT--GPVPPRGPPNAPTRNMTAP---VPPRPQDDYFNRPGTSQSQRPSPRGP 593
Cdd:PHA03247 2885 RLARPAVSRSTESFALPPDQPERPPQpqAPPPPQPQPQPPPPPQPQPpppPPPRPQPPLAPTTDPAGAGEPSGAVP 2960
 
Name Accession Description Interval E-value
KCH pfam16944
Fungal potassium channel; KHC is a family of fungal proteins carrying three transmembrane ...
 18-272 1.11e-155

Fungal potassium channel; KHC is a family of fungal proteins carrying three transmembrane domains. It is a member of the fungal potassium channel family of transporters, and includes a pair of homologous sequences that localize to distinct zones of the yeast plasma membrane and are induced during the response to mating pheromones. Together KCH1 and KCH2 promote low-affinity K+ uptake and are essential for K+-dependent activation of HACS - a high-affinity Ca2+ influx system that activates calcineurin and is essential for cell survival - in S. cerevisiae cells responding to mating pheromones.


Pssm-ID: 435670  Cd Length: 251  Bit Score: 446.96  E-value: 1.11e-155
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996646468   18 KWDYINLNDFKSRGCLTPFAYFYLWLMLIISLAVYGVDMFTAINLLAFDRWSSEIDPAIDFKISKWIFSISIIASFVNLA 97
Cdd:pfam16944   1 KFDFIDLDDFKNTSCWTPFSYIFLWILLLLSFAVYASDIYTAVNLLAFNRWSSQIKPAIPFKISKWIFSGCIIFSFVLLA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996646468   98 FEHFRAHRVMKRGNVAECYLDTIAVRLESIRfgkgqGWKRFLVFAELTKSKKGAEYIALFTYFSFQSWIRVLVCSGPRQV 177
Cdd:pfam16944  81 YEWIRAIRIYRTRNIALAYLNNLARRLYSIR-----GYRRFCVFAEITKSKKGFDYIAFFTYFEFKSWKRLLLADGPRQV 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996646468  178 VNALTLKSVYDAKLAVHEVSVEGSLLGFFDKIKTLATEDYQQALILSGMVFTLLIWVFSALYLIMAVLFYVFFLFHWIPK 257
Cdd:pfam16944 156 INGLTLYSVLLAKLSPGGENALESFSGFFSNIKAIAETNHREAVILSFMLFSFVIWVFSFLKLILAMILYIPFLWHIIPR 235

                         250
                  ....*....|....*
gi 996646468  258 ADGGLSGYCERKVTK 272
Cdd:pfam16944 236 GDGGLKEYCCRKVNK 250
PHA03247 PHA03247
large tegument protein UL36; Provisional
 292-593 4.11e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 50.32  E-value: 4.11e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996646468  292 SKRKAEMKAAKKNGEKMPLERQATLPTLPNVGDPDKLAEMPMFGRNDTFATLPAYESRPGTPGsielnsmdqkrPLPSRM 371
Cdd:PHA03247 2662 SRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPG-----------PAAARQ 2730

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996646468  372 GTTTSTASYSSRAPLVGGAADFGYQRSGSP-APSLPPmdlNNYPPQRPGTSNSQRSFRPQISHVQTNSQSSLRGGFSESP 450
Cdd:PHA03247 2731 ASPALPAAPAPPAVPAGPATPGGPARPARPpTTAGPP---APAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADP 2807

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996646468  451 STYSPDTMPPFPPPVRSNTG--------RSVESFRSQRQNTYQSDRGTPAPRGtydDYSSQSNGRASPAPSAYSGRAPAP 522
Cdd:PHA03247 2808 PAAVLAPAAALPPAASPAGPlppptsaqPTAPPPPPGPPPPSLPLGGSVAPGG---DVRRRPPSRSPAAKPAAPARPPVR 2884

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 996646468  523 MPRGPGPLNNTPYQAYQPFNPQRSAT--GPVPPRGPPNAPTRNMTAP---VPPRPQDDYFNRPGTSQSQRPSPRGP 593
Cdd:PHA03247 2885 RLARPAVSRSTESFALPPDQPERPPQpqAPPPPQPQPQPPPPPQPQPpppPPPRPQPPLAPTTDPAGAGEPSGAVP 2960
DUF3824 pfam12868
Domain of unknwon function (DUF3824); This is a repeating domain found in fungal proteins. It ...
 512-607 6.38e-04

Domain of unknwon function (DUF3824); This is a repeating domain found in fungal proteins. It is proline-rich, and the function is not known.


Pssm-ID: 372351 [Multi-domain]  Cd Length: 145  Bit Score: 40.49  E-value: 6.38e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996646468  512 PSAYSGRAPAPMPRGPGPlnntPYQAYQPFNPQRSATGPVPPRGPPNAPTRNMTAPVPPRPQDDYFNRPGTSQSQRPSPR 591
Cdd:pfam12868  50 DYYEDPYSPSPYPPSPAG----PYASQGQYYPETNYFPPPPGSTPQPPVDPQPNAPPPPYNPADYPPPPGAAPPPQPYQY 125

                          90
                  ....*....|....*.
gi 996646468  592 GPGYGYNNDVESQRDP 607
Cdd:pfam12868 126 PPPPGPDPYAPRPRRA 141
PABP-1234 TIGR01628
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ...
 503-608 1.24e-03

polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range.


Pssm-ID: 130689 [Multi-domain]  Cd Length: 562  Bit Score: 41.72  E-value: 1.24e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996646468  503 QSNGRASPAPSAYSGRAPAPMPRGPGPLNNTPyqaYQPFNPQRSAtgPVPPRGPPNAPTRNMTaPVPPRPQddyfNRPGT 582
Cdd:TIGR01628 379 QPRMRQLPMGSPMGGAMGQPPYYGQGPQQQFN---GQPLGWPRMS--MMPTPMGPGGPLRPNG-LAPMNAV----RAPSR 448

                          90       100
                  ....*....|....*....|....*..
gi 996646468  583 SQSQRPSPRGPG-YGYNNDVESQRDPR 608
Cdd:TIGR01628 449 NAQNAAQKPPMQpVMYPPNYQSLPLSQ 475
 
Name Accession Description Interval E-value
KCH pfam16944
Fungal potassium channel; KHC is a family of fungal proteins carrying three transmembrane ...
 18-272 1.11e-155

Fungal potassium channel; KHC is a family of fungal proteins carrying three transmembrane domains. It is a member of the fungal potassium channel family of transporters, and includes a pair of homologous sequences that localize to distinct zones of the yeast plasma membrane and are induced during the response to mating pheromones. Together KCH1 and KCH2 promote low-affinity K+ uptake and are essential for K+-dependent activation of HACS - a high-affinity Ca2+ influx system that activates calcineurin and is essential for cell survival - in S. cerevisiae cells responding to mating pheromones.


Pssm-ID: 435670  Cd Length: 251  Bit Score: 446.96  E-value: 1.11e-155
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996646468   18 KWDYINLNDFKSRGCLTPFAYFYLWLMLIISLAVYGVDMFTAINLLAFDRWSSEIDPAIDFKISKWIFSISIIASFVNLA 97
Cdd:pfam16944   1 KFDFIDLDDFKNTSCWTPFSYIFLWILLLLSFAVYASDIYTAVNLLAFNRWSSQIKPAIPFKISKWIFSGCIIFSFVLLA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996646468   98 FEHFRAHRVMKRGNVAECYLDTIAVRLESIRfgkgqGWKRFLVFAELTKSKKGAEYIALFTYFSFQSWIRVLVCSGPRQV 177
Cdd:pfam16944  81 YEWIRAIRIYRTRNIALAYLNNLARRLYSIR-----GYRRFCVFAEITKSKKGFDYIAFFTYFEFKSWKRLLLADGPRQV 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996646468  178 VNALTLKSVYDAKLAVHEVSVEGSLLGFFDKIKTLATEDYQQALILSGMVFTLLIWVFSALYLIMAVLFYVFFLFHWIPK 257
Cdd:pfam16944 156 INGLTLYSVLLAKLSPGGENALESFSGFFSNIKAIAETNHREAVILSFMLFSFVIWVFSFLKLILAMILYIPFLWHIIPR 235

                         250
                  ....*....|....*
gi 996646468  258 ADGGLSGYCERKVTK 272
Cdd:pfam16944 236 GDGGLKEYCCRKVNK 250
PHA03247 PHA03247
large tegument protein UL36; Provisional
 292-593 4.11e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 50.32  E-value: 4.11e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996646468  292 SKRKAEMKAAKKNGEKMPLERQATLPTLPNVGDPDKLAEMPMFGRNDTFATLPAYESRPGTPGsielnsmdqkrPLPSRM 371
Cdd:PHA03247 2662 SRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPG-----------PAAARQ 2730

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996646468  372 GTTTSTASYSSRAPLVGGAADFGYQRSGSP-APSLPPmdlNNYPPQRPGTSNSQRSFRPQISHVQTNSQSSLRGGFSESP 450
Cdd:PHA03247 2731 ASPALPAAPAPPAVPAGPATPGGPARPARPpTTAGPP---APAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADP 2807

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996646468  451 STYSPDTMPPFPPPVRSNTG--------RSVESFRSQRQNTYQSDRGTPAPRGtydDYSSQSNGRASPAPSAYSGRAPAP 522
Cdd:PHA03247 2808 PAAVLAPAAALPPAASPAGPlppptsaqPTAPPPPPGPPPPSLPLGGSVAPGG---DVRRRPPSRSPAAKPAAPARPPVR 2884

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 996646468  523 MPRGPGPLNNTPYQAYQPFNPQRSAT--GPVPPRGPPNAPTRNMTAP---VPPRPQDDYFNRPGTSQSQRPSPRGP 593
Cdd:PHA03247 2885 RLARPAVSRSTESFALPPDQPERPPQpqAPPPPQPQPQPPPPPQPQPpppPPPRPQPPLAPTTDPAGAGEPSGAVP 2960
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 387-609 3.24e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 46.90  E-value: 3.24e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996646468 387 VGGAADFGYQRSGSPAPSLPPMDLNNYPPQRPGTSNSQrsfrpqishvqtnsQSSLRGGFSESPSTYSPDTMPPFPPPVR 466
Cdd:PRK07764 587 VVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAP--------------AAPAPAGAAAAPAEASAAPAPGVAAPEH 652

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996646468 467 SNTGRSVESFRSQRQNTYQSDRGTP--APRGTYDDYSSQSNGRASPAPSAYSGRAPAPMPRGPGPLNNTPYQAYQPFNPQ 544
Cdd:PRK07764 653 HPKHVAVPDASDGGDGWPAKAGGAApaAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPS 732

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 996646468 545 RSATGPVPPRGPPNAPTRNMTAPVPPRPQDDYFNRPGTSQSQRPSPRGPgygynnDVESQRDPRY 609
Cdd:PRK07764 733 PAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSE------EEEMAEDDAP 791
PHA03247 PHA03247
large tegument protein UL36; Provisional
 398-593 1.85e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 44.93  E-value: 1.85e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996646468  398 SGSPAPSLPPMDL-----NNYPPQRP-----GTSNSQRSFRPQISHVQTNSQSSL--RGGF--SESPSTYSPDTMPPFP- 462
Cdd:PHA03247 2548 AGDPPPPLPPAAPpaapdRSVPPPRPaprpsEPAVTSRARRPDAPPQSARPRAPVddRGDPrgPAPPSPLPPDTHAPDPp 2627

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996646468  463 PPVRSNTGRSVESFRSQRQNTYQSDRGTPAPRGTYDDYSSQSNGRASPAPSAYSGRAPAPMPRGPGPLNNtpyqayqpfn 542
Cdd:PHA03247 2628 PPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTS---------- 2697

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 996646468  543 pqrSATGPVPPRGPPNAPTRNMTA-PVPPRPQDDYFNRPGT--SQSQRPSPRGP 593
Cdd:PHA03247 2698 ---LADPPPPPPTPEPAPHALVSAtPLPPGPAAARQASPALpaAPAPPAVPAGP 2748
PHA03379 PHA03379
EBNA-3A; Provisional
 492-593 6.33e-04

EBNA-3A; Provisional


Pssm-ID: 223066 [Multi-domain]  Cd Length: 935  Bit Score: 42.74  E-value: 6.33e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996646468 492 APRGTYDDYSSqsnGRASPAP--SAYSGRAPAPMPRGP------GPLNNTPYQAYQPFNPQRSATGPVPprgppnAPTRN 563
Cdd:PHA03379 470 LPPGPLQDLEP---GDQLPGVvqDGRPACAPVPAPAGPivrpweASLSQVPGVAFAPVMPQPMPVEPVP------VPTVA 540

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 996646468 564 MTAPVPPRPQDDYFNRPG-------TSQSQRPSPRGP 593
Cdd:PHA03379 541 LERPVCPAPPLIAMQGPGetsgivrVRERWRPAPWTP 577
DUF3824 pfam12868
Domain of unknwon function (DUF3824); This is a repeating domain found in fungal proteins. It ...
 512-607 6.38e-04

Domain of unknwon function (DUF3824); This is a repeating domain found in fungal proteins. It is proline-rich, and the function is not known.


Pssm-ID: 372351 [Multi-domain]  Cd Length: 145  Bit Score: 40.49  E-value: 6.38e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996646468  512 PSAYSGRAPAPMPRGPGPlnntPYQAYQPFNPQRSATGPVPPRGPPNAPTRNMTAPVPPRPQDDYFNRPGTSQSQRPSPR 591
Cdd:pfam12868  50 DYYEDPYSPSPYPPSPAG----PYASQGQYYPETNYFPPPPGSTPQPPVDPQPNAPPPPYNPADYPPPPGAAPPPQPYQY 125

                          90
                  ....*....|....*.
gi 996646468  592 GPGYGYNNDVESQRDP 607
Cdd:pfam12868 126 PPPPGPDPYAPRPRRA 141
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 390-593 9.08e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 42.47  E-value: 9.08e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996646468  390 AADFGYQRSGSP--APSLPPMDLNNYPPQRPGTSNSQRSFRPQISHVQTNSQSSLRGGFSESPSTYSPDTMPPFPPPVRS 467
Cdd:PHA03307   13 AAAEGGEFFPRPpaTPGDAADDLLSGSQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSL 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996646468  468 NTgRSVESFRsQRQNTYQSDRGTPAPRGtyddyssQSNGRASPAPSAYSGRAPAPMPRGPGPLNNTPYQAYQPFNPQRSA 547
Cdd:PHA03307   93 ST-LAPASPA-REGSPTPPGPSSPDPPP-------PTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVA 163

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 996646468  548 TGPVPPRGP--PNAPTRNMTAPVPPRPQDDYFNRPGTSQSQRPSPRGP 593
Cdd:PHA03307  164 SDAASSRQAalPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSS 211
PHA03269 PHA03269
envelope glycoprotein C; Provisional
 491-590 1.11e-03

envelope glycoprotein C; Provisional


Pssm-ID: 165527 [Multi-domain]  Cd Length: 566  Bit Score: 42.02  E-value: 1.11e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996646468 491 PAPRGTYDDYSSQSNGRASPAPSAYSGRAPAPMP---------RGPGPLNNTPYQAYQPFNP-----QRSATGPVPPRGP 556
Cdd:PHA03269  23 NTNIPIPELHTSAATQKPDPAPAPHQAASRAPDPavaptsaasRKPDLAQAPTPAASEKFDPapaphQAASRAPDPAVAP 102

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 996646468 557 PNAPTRNMTAPVP----PRPQDDYFNRPGTSQSQRPSP 590
Cdd:PHA03269 103 QLAAAPKPDAAEAftsaAQAHEAPADAGTSAASKKPDP 140
PABP-1234 TIGR01628
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ...
 503-608 1.24e-03

polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range.


Pssm-ID: 130689 [Multi-domain]  Cd Length: 562  Bit Score: 41.72  E-value: 1.24e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996646468  503 QSNGRASPAPSAYSGRAPAPMPRGPGPLNNTPyqaYQPFNPQRSAtgPVPPRGPPNAPTRNMTaPVPPRPQddyfNRPGT 582
Cdd:TIGR01628 379 QPRMRQLPMGSPMGGAMGQPPYYGQGPQQQFN---GQPLGWPRMS--MMPTPMGPGGPLRPNG-LAPMNAV----RAPSR 448

                          90       100
                  ....*....|....*....|....*..
gi 996646468  583 SQSQRPSPRGPG-YGYNNDVESQRDPR 608
Cdd:TIGR01628 449 NAQNAAQKPPMQpVMYPPNYQSLPLSQ 475
PHA03247 PHA03247
large tegument protein UL36; Provisional
 309-574 2.21e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.46  E-value: 2.21e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996646468  309 PLERQATLPTLPNVGDPDKLAEMPMFGRNDTFATLPAYESRPGTPGSIELNSMDQKRPLPSRMGTTTSTASYSSRAP--- 385
Cdd:PHA03247 2725 PAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPwdp 2804

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996646468  386 ----LVGGAADFGYQRSGSPAPSLPPmDLNNYPPQRPGTSNSQRSFRPQISHVQTNSQSSLRGGFSESPSTYSPDTMPPF 461
Cdd:PHA03247 2805 adppAAVLAPAAALPPAASPAGPLPP-PTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPV 2883

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996646468  462 PPPVRSNTGRSVESFrSQRQNTYQSDRGTPAPRGTYDDYSSQSNGRASPAPSAySGRAPAPMPRGPGPLNNTPYQAYQPf 541
Cdd:PHA03247 2884 RRLARPAVSRSTESF-ALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPP-PPRPQPPLAPTTDPAGAGEPSGAVP- 2960

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 996646468  542 NPQRSATGP----VP-PRGPPNAPTRNMTAPVPPRPQD 574
Cdd:PHA03247 2961 QPWLGALVPgrvaVPrFRVPQPAPSREAPASSTPPLTG 2998
PHA02682 PHA02682
ORF080 virion core protein; Provisional
 501-593 5.35e-03

ORF080 virion core protein; Provisional


Pssm-ID: 177464 [Multi-domain]  Cd Length: 280  Bit Score: 39.07  E-value: 5.35e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996646468 501 SSQSNGRASPAPSAYSGRAPAPMPRGPGPLNNTPYQAyqPFNPqrSATGPV-PPRGPPNAPTRNMTA---------PVPP 570
Cdd:PHA02682  77 SGQSPLAPSPACAAPAPACPACAPAAPAPAVTCPAPA--PACP--PATAPTcPPPAVCPAPARPAPAcppstrqcpPAPP 152

                         90       100
                 ....*....|....*....|....*
gi 996646468 571 RPQDDYF--NRPGTSQSQRPSPRGP 593
Cdd:PHA02682 153 LPTPKPApaAKPIFLHNQLPPPDYP 177
PHA03247 PHA03247
large tegument protein UL36; Provisional
 316-594 5.45e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 39.92  E-value: 5.45e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996646468  316 LPTLPNVGDPDKLAEMPMFGRNDTFATLPAYESRPGTPgsielnsmdqkrPLPSRmgtttstasysSRAPlVGGAADFgy 395
Cdd:PHA03247 2555 LPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAP------------PQSAR-----------PRAP-VDDRGDP-- 2608

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996646468  396 qrSGSPAPSLPPMDlnNYPPQRPGTSNSQRSFRPQISHVQTNSQS--------------SLRGGFSESPSTYSPDTMPPF 461
Cdd:PHA03247 2609 --RGPAPPSPLPPD--THAPDPPPPSPSPAANEPDPHPPPTVPPPerprddpapgrvsrPRRARRLGRAAQASSPPQRPR 2684

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996646468  462 PPPVRSNTGRSVESFRSQRQNTYQSDRGTPAPRGTYDDYSSQSNGRASPAPSAysgrAPAPMPRGPGPLnnTPYQAYQPF 541
Cdd:PHA03247 2685 RRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPA----APAPPAVPAGPA--TPGGPARPA 2758

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996646468  542 NPQRSAT--GPVPPRGPPNAPTRNMT-------------APVPPRPQDDYFNRPG------------------TSQSQRP 588
Cdd:PHA03247 2759 RPPTTAGppAPAPPAAPAAGPPRRLTrpavaslsesresLPSPWDPADPPAAVLApaaalppaaspagplpppTSAQPTA 2838


                  ....*.
gi 996646468  589 SPRGPG 594
Cdd:PHA03247 2839 PPPPPG 2844
PHA03378 PHA03378
EBNA-3B; Provisional
 508-593 7.32e-03

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 39.67  E-value: 7.32e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996646468 508 ASPAPSAYSGRAPAPMPRGPGPLNNTPYQAYQPFNPQRSATGPVPPRGPPNAPTRNMTAPVPPRPQDDYFNRPGTSQSQR 587
Cdd:PHA03378 699 RAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGAPTPQP 778


                 ....*.
gi 996646468 588 PSPRGP 593
Cdd:PHA03378 779 PPQAPP 784
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 344-570 9.21e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 39.38  E-value: 9.21e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996646468  344 PAYESRPGTPGSIELNSMDQKRPLPSRMGTTTSTASYSSRAPLVGGAADFGyQRSGSPAPSLPPMDLN---------NYP 414
Cdd:PHA03307  200 AAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWG-PENECPLPRPAPITLPtriweasgwNGP 278

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996646468  415 PQRPGTSNSQRSFRPQISHVqtnSQSSLRGGFSESPSTYSpdtmppfpppvrSNTGRSVESFRSQRQNTYQSDRGTPAPR 494
Cdd:PHA03307  279 SSRPGPASSSSSPRERSPSP---SPSSPGSGPAPSSPRAS------------SSSSSSRESSSSSTSSSSESSRGAAVSP 343

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996646468  495 GTyDDYSSQSNGRASPAPsaysgrAPAPMPRGPGPLNNTPYQAYQPFNPQRSATGPVP-----PRGPPNAPTRNMTAPVP 569
Cdd:PHA03307  344 GP-SPSRSPSPSRPPPPA------DPSSPRKRPRPSRAPSSPAASAGRPTRRRARAAVagrarRRDATGRFPAGRPRPSP 416


                  .
gi 996646468  570 P 570
Cdd:PHA03307  417 L 417
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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