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Conserved domains on  [gi|996646478|gb|KXH65456|]
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hypothetical protein CNYM01_09966 [Colletotrichum nymphaeae SA-01]

Protein Classification

RXT2 domain-containing protein( domain architecture ID 10554280)

RXT2 domain-containing protein similar to Saccharomyces cerevisiae transcriptional regulatory protein RXT2, a component of the RPD3C(L) histone deacetylase complex (HDAC) responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RXT2_N pfam08595
RXT2-like, N-terminal; The family represents the N-terminal region of RXT2-like proteins. In S. ...
 37-177 1.39e-66

RXT2-like, N-terminal; The family represents the N-terminal region of RXT2-like proteins. In S. cerevisiae, RXT2 has been demonstrated to be involved in conjugation with cellular fusion (mating) and invasive growth. A high throughput localization study has localized RXT2 to the nucleus.


:

Pssm-ID: 430097  Cd Length: 139  Bit Score: 210.16  E-value: 1.39e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996646478   37 NRGHKLQKRALFAHKGQLAPPSGPEVYNEVIDYAGQQRTIISRNPPIVDEEGYEIDSDDDEERiqeAVASATELDPYANI 116
Cdd:pfam08595   2 NRGNKLKKRARFVHRGRLGSPNGPDAYKEVVEYAGYERNILSRNPPLYDEDGDEIDSDDDDER---VDAAAAEENPYKLI 78

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 996646478  117 RIEQILAPLTASIDLPQHPTLSKPFTAKTLDEIAEQSCDVRRKENASLWRVRHLFTKICGD 177
Cdd:pfam08595  79 RLEELLAPLTHPSDLPTHPSLSRPFKSKALTELALQAIEMIEKEQNSLWKLKKLLTVLLGD 139
 
Name Accession Description Interval E-value
RXT2_N pfam08595
RXT2-like, N-terminal; The family represents the N-terminal region of RXT2-like proteins. In S. ...
 37-177 1.39e-66

RXT2-like, N-terminal; The family represents the N-terminal region of RXT2-like proteins. In S. cerevisiae, RXT2 has been demonstrated to be involved in conjugation with cellular fusion (mating) and invasive growth. A high throughput localization study has localized RXT2 to the nucleus.


Pssm-ID: 430097  Cd Length: 139  Bit Score: 210.16  E-value: 1.39e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996646478   37 NRGHKLQKRALFAHKGQLAPPSGPEVYNEVIDYAGQQRTIISRNPPIVDEEGYEIDSDDDEERiqeAVASATELDPYANI 116
Cdd:pfam08595   2 NRGNKLKKRARFVHRGRLGSPNGPDAYKEVVEYAGYERNILSRNPPLYDEDGDEIDSDDDDER---VDAAAAEENPYKLI 78

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 996646478  117 RIEQILAPLTASIDLPQHPTLSKPFTAKTLDEIAEQSCDVRRKENASLWRVRHLFTKICGD 177
Cdd:pfam08595  79 RLEELLAPLTHPSDLPTHPSLSRPFKSKALTELALQAIEMIEKEQNSLWKLKKLLTVLLGD 139
 
Name Accession Description Interval E-value
RXT2_N pfam08595
RXT2-like, N-terminal; The family represents the N-terminal region of RXT2-like proteins. In S. ...
 37-177 1.39e-66

RXT2-like, N-terminal; The family represents the N-terminal region of RXT2-like proteins. In S. cerevisiae, RXT2 has been demonstrated to be involved in conjugation with cellular fusion (mating) and invasive growth. A high throughput localization study has localized RXT2 to the nucleus.


Pssm-ID: 430097  Cd Length: 139  Bit Score: 210.16  E-value: 1.39e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996646478   37 NRGHKLQKRALFAHKGQLAPPSGPEVYNEVIDYAGQQRTIISRNPPIVDEEGYEIDSDDDEERiqeAVASATELDPYANI 116
Cdd:pfam08595   2 NRGNKLKKRARFVHRGRLGSPNGPDAYKEVVEYAGYERNILSRNPPLYDEDGDEIDSDDDDER---VDAAAAEENPYKLI 78

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 996646478  117 RIEQILAPLTASIDLPQHPTLSKPFTAKTLDEIAEQSCDVRRKENASLWRVRHLFTKICGD 177
Cdd:pfam08595  79 RLEELLAPLTHPSDLPTHPSLSRPFKSKALTELALQAIEMIEKEQNSLWKLKKLLTVLLGD 139
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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