|
Name |
Accession |
Description |
Interval |
E-value |
| flgD |
PRK06792 |
flagellar basal body rod modification protein; Validated |
1-190 |
3.28e-125 |
|
flagellar basal body rod modification protein; Validated
Pssm-ID: 180695 [Multi-domain] Cd Length: 190 Bit Score: 350.47 E-value: 3.28e-125
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003878282 1 MPTVGLNTTSTNHIPLQAGAQNRNAPVNGAQPAVGQMNGVSAGEQKTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMN 80
Cdd:PRK06792 1 MPTVGLNTTSTNHIPLQAGAQTKNASVTGAQSTAQQANGVSASTQKTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003878282 81 QTAQLSLMEQVQNMTKAVDSLRTTMYSTALDGGMKFLGKYVRGIDGDGKKVTGQVETVRLAENNDVQLVIDNKIVSLRFV 160
Cdd:PRK06792 81 QTAQLSLMEQVQNMTKAVDKLQSTMYSTALDGGMKFLGKYVRGVSNDGKQVTGQVETVRLAENNDVQLIVDNQVVSLRFV 160
|
170 180 190
....*....|....*....|....*....|
gi 1003878282 161 ERVSDKPIGETNPEDAKKDDQKVAEEEKTT 190
Cdd:PRK06792 161 ERVSDKPITETNPEDEKKDDIEKNEEVKPD 190
|
|
| FlgD |
COG1843 |
Flagellar hook-capping protein FlgD [Cell motility]; |
41-152 |
6.34e-18 |
|
Flagellar hook-capping protein FlgD [Cell motility];
Pssm-ID: 441448 [Multi-domain] Cd Length: 223 Bit Score: 78.12 E-value: 6.34e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003878282 41 SAGEQKTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDSLRTTMYSTALDGGMKFLGKY 120
Cdd:COG1843 18 TSSSSSSSSSLGKDDFLKLLVAQLQNQDPLNPMDNTEFIAQLAQFSTVEQIENLNTTLESLASSLTSSQALQASSLIGKE 97
|
90 100 110
....*....|....*....|....*....|....*.
gi 1003878282 121 VR----GIDGDGKKVTGQVETVRLAENndVQLVIDN 152
Cdd:COG1843 98 VLvegnTISLDGGSASGGFELPSAADS--VTVTITD 131
|
|
| FlgD |
pfam03963 |
Flagellar hook capping protein - N-terminal region; FlgD is known to be absolutely required ... |
30-100 |
1.02e-17 |
|
Flagellar hook capping protein - N-terminal region; FlgD is known to be absolutely required for hook assembly, yet it has not been detected in the mature flagellum. It appears to act as a hook-capping protein to enable assembly of hook protein subunits. FlgD regulates the assembly of the hook cap structure to prevent leakage of hook monomers into the medium and hook monomer polymerization and also plays a role in determination of the correct hook length, with the help of the FliK protein. This family represents the N-terminal conserved region of FlgD. A recent crystal structure showed that this region was likely to be flexible and was cleaved off during crystallization.
Pssm-ID: 427619 [Multi-domain] Cd Length: 75 Bit Score: 73.82 E-value: 1.02e-17
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1003878282 30 AQPAVGQMNGVSAGEQKTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDS 100
Cdd:pfam03963 5 NSSSTTSTSSSSSTSAKSSSTLGKDDFLKLLTTQLQNQDPLNPMDNTQFTSQLAQFSSVEQIEKLNKTLDS 75
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| flgD |
PRK06792 |
flagellar basal body rod modification protein; Validated |
1-190 |
3.28e-125 |
|
flagellar basal body rod modification protein; Validated
Pssm-ID: 180695 [Multi-domain] Cd Length: 190 Bit Score: 350.47 E-value: 3.28e-125
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003878282 1 MPTVGLNTTSTNHIPLQAGAQNRNAPVNGAQPAVGQMNGVSAGEQKTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMN 80
Cdd:PRK06792 1 MPTVGLNTTSTNHIPLQAGAQTKNASVTGAQSTAQQANGVSASTQKTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003878282 81 QTAQLSLMEQVQNMTKAVDSLRTTMYSTALDGGMKFLGKYVRGIDGDGKKVTGQVETVRLAENNDVQLVIDNKIVSLRFV 160
Cdd:PRK06792 81 QTAQLSLMEQVQNMTKAVDKLQSTMYSTALDGGMKFLGKYVRGVSNDGKQVTGQVETVRLAENNDVQLIVDNQVVSLRFV 160
|
170 180 190
....*....|....*....|....*....|
gi 1003878282 161 ERVSDKPIGETNPEDAKKDDQKVAEEEKTT 190
Cdd:PRK06792 161 ERVSDKPITETNPEDEKKDDIEKNEEVKPD 190
|
|
| flgD |
PRK11911 |
flagellar basal body rod modification protein; Provisional |
38-164 |
1.58e-25 |
|
flagellar basal body rod modification protein; Provisional
Pssm-ID: 138812 [Multi-domain] Cd Length: 140 Bit Score: 96.06 E-value: 1.58e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003878282 38 NGVSAGEQKTpgvMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDSLRTTMYSTALDGGMKFL 117
Cdd:PRK11911 16 NAVTSSVSKT---LGKDDFMKLFLTSLQYQDPSSPLDTNEMMSQMAQLSLMEQVANMTTAVDKLSEQAQNSALQSAVNFI 92
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1003878282 118 GKYVRGIDGDGKKVTGQVETVRLAENNDVQLVIDN-KIVSLRFVERVS 164
Cdd:PRK11911 93 GKDIKGVSLNGEVISGKVESVQQTTNGVMLKLKDNdSLVPMTYVTEIN 140
|
|
| flgD |
PRK09618 |
flagellar hook assembly protein FlgD; |
27-166 |
9.34e-19 |
|
flagellar hook assembly protein FlgD;
Pssm-ID: 236594 [Multi-domain] Cd Length: 142 Bit Score: 78.50 E-value: 9.34e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003878282 27 VNGAQPAVGQMNGVSAgEQKTPGVM-GKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVdslrTTM 105
Cdd:PRK09618 3 MTGIDSSLWLANSKKA-ERRTGNQNlGKDDFLKLLITQLQNQDPTNPMEDKEFIAQMAQFSSLEQMTNMNKSM----EKL 77
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1003878282 106 YSTaLDGGMKF---LGKYVRGIDGDGKKVTGQVETVRLAENNDVQLVIDNKIVSLRFVERVSDK 166
Cdd:PRK09618 78 VSS-SDGLTKYselIGKEVEWEGEDGEIVSGTVTSVKQKDGDYPLVLDNGTWIVADNVTSVGLK 140
|
|
| FlgD |
COG1843 |
Flagellar hook-capping protein FlgD [Cell motility]; |
41-152 |
6.34e-18 |
|
Flagellar hook-capping protein FlgD [Cell motility];
Pssm-ID: 441448 [Multi-domain] Cd Length: 223 Bit Score: 78.12 E-value: 6.34e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003878282 41 SAGEQKTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDSLRTTMYSTALDGGMKFLGKY 120
Cdd:COG1843 18 TSSSSSSSSSLGKDDFLKLLVAQLQNQDPLNPMDNTEFIAQLAQFSTVEQIENLNTTLESLASSLTSSQALQASSLIGKE 97
|
90 100 110
....*....|....*....|....*....|....*.
gi 1003878282 121 VR----GIDGDGKKVTGQVETVRLAENndVQLVIDN 152
Cdd:COG1843 98 VLvegnTISLDGGSASGGFELPSAADS--VTVTITD 131
|
|
| FlgD |
pfam03963 |
Flagellar hook capping protein - N-terminal region; FlgD is known to be absolutely required ... |
30-100 |
1.02e-17 |
|
Flagellar hook capping protein - N-terminal region; FlgD is known to be absolutely required for hook assembly, yet it has not been detected in the mature flagellum. It appears to act as a hook-capping protein to enable assembly of hook protein subunits. FlgD regulates the assembly of the hook cap structure to prevent leakage of hook monomers into the medium and hook monomer polymerization and also plays a role in determination of the correct hook length, with the help of the FliK protein. This family represents the N-terminal conserved region of FlgD. A recent crystal structure showed that this region was likely to be flexible and was cleaved off during crystallization.
Pssm-ID: 427619 [Multi-domain] Cd Length: 75 Bit Score: 73.82 E-value: 1.02e-17
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1003878282 30 AQPAVGQMNGVSAGEQKTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDS 100
Cdd:pfam03963 5 NSSSTTSTSSSSSTSAKSSSTLGKDDFLKLLTTQLQNQDPLNPMDNTQFTSQLAQFSSVEQIEKLNKTLDS 75
|
|
| flgD |
PRK06009 |
flagellar hook assembly protein FlgD; |
41-143 |
7.48e-12 |
|
flagellar hook assembly protein FlgD;
Pssm-ID: 235670 [Multi-domain] Cd Length: 140 Bit Score: 60.11 E-value: 7.48e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003878282 41 SAGEQKTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDSLRTTMYSTALDGgmkFLGKY 120
Cdd:PRK06009 23 NSTSAANKASVNYDSFLQLLIAQMKNQDPTDPMDATQYVSQLATFSQVEQSIQTNSKLDTLLASSSLTQAEG---LIGRT 99
|
90 100
....*....|....*....|...
gi 1003878282 121 VRGIDGdgkKVTGQVETVRLAEN 143
Cdd:PRK06009 100 VTSADG---SITGVVKSVTVYSD 119
|
|
| flgD |
PRK12812 |
flagellar basal body rod modification protein; Reviewed |
28-141 |
1.35e-11 |
|
flagellar basal body rod modification protein; Reviewed
Pssm-ID: 139245 [Multi-domain] Cd Length: 259 Bit Score: 61.43 E-value: 1.35e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003878282 28 NGAQPAVGQMNGVSAGEQKTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDSLRTTMYS 107
Cdd:PRK12812 21 SASTSGATRTDSSSSTGSNPNSQLDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLAALEMQENTNTTMQKLVEQMQS 100
|
90 100 110
....*....|....*....|....*....|....
gi 1003878282 108 TALDGGMKFLGKYVrGIDGDGKKVTGQVETVRLA 141
Cdd:PRK12812 101 SMSTSALSALGKMA-TVSDNAVKLTGADELIALK 133
|
|
| flgD |
PRK06655 |
flagellar hook assembly protein FlgD; |
25-107 |
9.38e-09 |
|
flagellar hook assembly protein FlgD;
Pssm-ID: 235847 [Multi-domain] Cd Length: 225 Bit Score: 53.03 E-value: 9.38e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003878282 25 APVNGAQPAVGQMNGVSAGEQKTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDSLRTT 104
Cdd:PRK06655 4 ANTVGSSSTSGLSTTSSSSSSKKGAADLQDDFLTLLVAQLKNQDPLNPMDNSQMTSQLAQFSTVSGIEKLNTTLGSLSSQ 83
|
...
gi 1003878282 105 MYS 107
Cdd:PRK06655 84 MTS 86
|
|
| flgD |
PRK12634 |
flagellar basal body rod modification protein; Reviewed |
46-121 |
3.13e-08 |
|
flagellar basal body rod modification protein; Reviewed
Pssm-ID: 183639 [Multi-domain] Cd Length: 221 Bit Score: 51.47 E-value: 3.13e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1003878282 46 KTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDSLRTTMYSTALDGGMKFLGKYV 121
Cdd:PRK12634 22 KKEEALGQADFLKLMTEQLQHQDPLKPMENSAFLGQLAQFSTVQGIGDLNTKVSNFSDSMSSDQVLKGAALVGHNV 97
|
|
| flgD |
PRK12633 |
flagellar basal body rod modification protein; Provisional |
24-101 |
3.86e-06 |
|
flagellar basal body rod modification protein; Provisional
Pssm-ID: 183638 [Multi-domain] Cd Length: 230 Bit Score: 45.73 E-value: 3.86e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1003878282 24 NAPVNGAQPAVGQMNGVSAGEQKtpgvmgKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDSL 101
Cdd:PRK12633 5 NETTSQAGLALAQAGSNSAAQGI------QDQFLTLLVTQLRNQDPLNPMENAELTSQLAQISTVEGINNLKNTMLAI 76
|
|
| flgD |
PRK09619 |
flagellar hook assembly protein FlgD; |
24-96 |
8.83e-06 |
|
flagellar hook assembly protein FlgD;
Pssm-ID: 181996 [Multi-domain] Cd Length: 218 Bit Score: 44.39 E-value: 8.83e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1003878282 24 NAPVNGAQPAVGQMNGVSAGEQKtpgvmgKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTK 96
Cdd:PRK09619 7 RNSANVGNQSPAPEGGLPGAEQL------NNQFMTLLVAQIQNQDPLNPADGTEFVSQLAQLSQVQSTENMAK 73
|
|
| flgD |
PRK05842 |
flagellar hook assembly protein FlgD; |
53-108 |
3.71e-05 |
|
flagellar hook assembly protein FlgD;
Pssm-ID: 235621 [Multi-domain] Cd Length: 295 Bit Score: 43.06 E-value: 3.71e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 1003878282 53 KDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDSLRTTMYST 108
Cdd:PRK05842 30 KNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEVASAMKSN 85
|
|
|