|
Name |
Accession |
Description |
Interval |
E-value |
| PRK14974 |
PRK14974 |
signal recognition particle-docking protein FtsY; |
2-308 |
2.75e-143 |
|
signal recognition particle-docking protein FtsY;
Pssm-ID: 237875 [Multi-domain] Cd Length: 336 Bit Score: 407.05 E-value: 2.75e-143
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 2 EKSIETELEHTLRAKKSIEEVVKAEKKPTP---------RISEEKLDDLLWDLEIGLLESDVAYSVIESIKKDIKEELRY 72
Cdd:PRK14974 18 EKIEEEEEEEAPEAEEEEEEEDEEEKKEKPgffdkakitEIKEKDIEDLLEELELELLESDVALEVAEEILESLKEKLVG 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 73 ASFERGK-IGEVVEKVLKNAISHVLKSNKL-DFMEFIEQNKKPIVIMFVGVNGSGKTLAIAKIATLLKKYGKSSVMAAGD 150
Cdd:PRK14974 98 KKVKRGEdVEEIVKNALKEALLEVLSVGDLfDLIEEIKSKGKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGD 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 151 TFRAGAIEQLSIHAENIGVKIIKHGSGADPAAVAYDAIDHAKAKHKDVVLLDTAGRVQTNINLMDEMAKIKRVAKPNMII 230
Cdd:PRK14974 178 TFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVI 257
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1008837765 231 FVGDALSGNDAVEQAKRFNEIVGIDGVILTKVDTDAKGGSALSVAYTIGKPLLFVGIGQGYEDHIPFDPQWMIDNIFG 308
Cdd:PRK14974 258 FVGDALAGNDAVEQAREFNEAVGIDGVILTKVDADAKGGAALSIAYVIGKPILFLGVGQGYDDLIPFDPDWFVDKLLG 335
|
|
| FtsY |
COG0552 |
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular ... |
17-310 |
1.29e-122 |
|
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440318 [Multi-domain] Cd Length: 303 Bit Score: 353.17 E-value: 1.29e-122
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 17 KSIEEVVKAEKKPTpriseeklDDLLWDLEIGLLESDVAYSVIESIKKDIKEELRyasFERGKIGEVVEKVLKNAISHVL 96
Cdd:COG0552 18 EKLKSLFSGKKKID--------EDLLEELEELLIEADVGVETTEEIIEELRERVK---RKKLKDPEELKEALKEELLEIL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 97 KSNKLdfmEFIEQNKKPIVIMFVGVNGSGKTLAIAKIATLLKKYGKSSVMAAGDTFRAGAIEQLSIHAENIGVKIIKHGS 176
Cdd:COG0552 87 DPVDK---PLAIEEKKPFVILVVGVNGVGKTTTIGKLAHRLKAEGKSVLLAAGDTFRAAAIEQLEVWGERVGVPVIAQKE 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 177 GADPAAVAYDAIDHAKAKHKDVVLLDTAGRVQTNINLMDEMAKIKRVAK------PNMIIFVGDALSGNDAVEQAKRFNE 250
Cdd:COG0552 164 GADPAAVAFDAIQAAKARGADVVIIDTAGRLHNKKNLMEELKKIKRVIKkldpdaPHEVLLVLDATTGQNALSQAKVFNE 243
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 251 IVGIDGVILTKVDTDAKGGSALSVAYTIGKPLLFVGIGQGYEDHIPFDPQWMIDNIFGKS 310
Cdd:COG0552 244 AVGVTGIVLTKLDGTAKGGVVLAIADELGIPIKFIGVGEGIDDLRPFDAEEFVDALFGEE 303
|
|
| ftsY |
TIGR00064 |
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and ... |
39-307 |
4.86e-114 |
|
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 272883 [Multi-domain] Cd Length: 277 Bit Score: 330.76 E-value: 4.86e-114
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 39 DDLLWDLEIGLLESDVAYSVIESIKKDIKEEL-RYASFERGKIGEVVEKVLKNAISHVLKSNKLDfmEFIEQNKKPIVIM 117
Cdd:TIGR00064 4 EDFFEELEEILLESDVGYEVVEKIIEALKKELkGKKVKDAEKLKEILKEYLKEILKEDLLKNTDL--ELIVEENKPNVIL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 118 FVGVNGSGKTLAIAKIATLLKKYGKSSVMAAGDTFRAGAIEQLSIHAENIGVKIIKHGSGADPAAVAYDAIDHAKAKHKD 197
Cdd:TIGR00064 82 FVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARNID 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 198 VVLLDTAGRVQTNINLMDEMAKIKRVAK------PNMIIFVGDALSGNDAVEQAKRFNEIVGIDGVILTKVDTDAKGGSA 271
Cdd:TIGR00064 162 VVLIDTAGRLQNKVNLMDELKKIKRVIKkvdkdaPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGTAKGGII 241
|
250 260 270
....*....|....*....|....*....|....*.
gi 1008837765 272 LSVAYTIGKPLLFVGIGQGYEDHIPFDPQWMIDNIF 307
Cdd:TIGR00064 242 LSIAYELKLPIKFIGVGEKIDDLAPFDADWFVEALF 277
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
113-308 |
2.69e-99 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 290.08 E-value: 2.69e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 113 PIVIMFVGVNGSGKTLAIAKIATLLKKYGKSSVM-AAGDTFRAGAIEQLSIHAENIGVKIIKHGSGADPAAVAYDAIDHA 191
Cdd:smart00962 1 PGVILLVGPNGVGKTTTIAKLAARLKLKGGKKVLlVAADTFRAAAVEQLKTYAEILGVVPVAGGEGADPVAVAKDAVELA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 192 KAKHKDVVLLDTAGRVQTNINLMDEMAKIKRVAKPNMIIFVGDALSGNDAVEQAKRFNEIVGIDGVILTKVDTDAKGGSA 271
Cdd:smart00962 81 KARGYDVVLIDTAGRLHNDENLMEELKKIKRVIKPDEVLLVSDATTGQDAVEQAKAFNEALGLTGIILTKLDGTAKGGAA 160
|
170 180 190
....*....|....*....|....*....|....*..
gi 1008837765 272 LSVAYTIGKPLLFVGIGQGYEDHIPFDPQWMIDNIFG 308
Cdd:smart00962 161 LSIAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLLG 197
|
|
| FtsY |
cd17874 |
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle ... |
115-306 |
5.98e-99 |
|
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle (SRP) receptor (SR), is homologous to the SRP receptor alpha-subunit (SRalpha) of the eukaryotic SR. It interacts with the signal-recognition particle (SRP) and is required for the co-translational membrane targeting of proteins.
Pssm-ID: 349783 Cd Length: 199 Bit Score: 289.47 E-value: 5.98e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 115 VIMFVGVNGSGKTLAIAKIATLLKKYGKSSVMAAGDTFRAGAIEQLSIHAENIGVKIIKHGSGADPAAVAYDAIDHAKAK 194
Cdd:cd17874 2 VILFVGVNGVGKTTTIGKLAHYLKNQGKKVVLAAGDTFRAAAVEQLEEWAERLGVPVISQNEGADPAAVAFDAIQAAKAR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 195 HKDVVLLDTAGRVQTNINLMDEMAKIKRVAK------PNMIIFVGDALSGNDAVEQAKRFNEIVGIDGVILTKVDTDAKG 268
Cdd:cd17874 82 GIDVVLIDTAGRLHTKKNLMEELKKIKRVIKkkdpeaPHEVLLVLDATTGQNALEQAKEFNEAVGLTGIILTKLDGTAKG 161
|
170 180 190
....*....|....*....|....*....|....*...
gi 1008837765 269 GSALSVAYTIGKPLLFVGIGQGYEDHIPFDPQWMIDNI 306
Cdd:cd17874 162 GIVLSIADELKIPVKFVGVGEGIDDLRPFDPEAFVEAL 199
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
115-306 |
6.86e-95 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 279.04 E-value: 6.86e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 115 VIMFVGVNGSGKTLAIAKIATLLKKYGKSSVMAAGDTFRAGAIEQLSIHAENIGVKIIKHGSGADPAAVAYDAIDHAKAK 194
Cdd:pfam00448 2 VILLVGLQGSGKTTTIAKLAAYLKKKGKKVLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKTGADPAAVAFDAVEKAKAE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 195 HKDVVLLDTAGRVQTNINLMDEMAKIKRVAKPNMIIFVGDALSGNDAVEQAKRFNEIVGIDGVILTKVDTDAKGGSALSV 274
Cdd:pfam00448 82 NYDVVLVDTAGRLQNDKNLMDELKKIKRVVAPDEVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDGDAKGGAALSI 161
|
170 180 190
....*....|....*....|....*....|..
gi 1008837765 275 AYTIGKPLLFVGIGQGYEDHIPFDPQWMIDNI 306
Cdd:pfam00448 162 VAETGKPIKFIGVGEKIDDLEPFDPERFVSRL 193
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK14974 |
PRK14974 |
signal recognition particle-docking protein FtsY; |
2-308 |
2.75e-143 |
|
signal recognition particle-docking protein FtsY;
Pssm-ID: 237875 [Multi-domain] Cd Length: 336 Bit Score: 407.05 E-value: 2.75e-143
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 2 EKSIETELEHTLRAKKSIEEVVKAEKKPTP---------RISEEKLDDLLWDLEIGLLESDVAYSVIESIKKDIKEELRY 72
Cdd:PRK14974 18 EKIEEEEEEEAPEAEEEEEEEDEEEKKEKPgffdkakitEIKEKDIEDLLEELELELLESDVALEVAEEILESLKEKLVG 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 73 ASFERGK-IGEVVEKVLKNAISHVLKSNKL-DFMEFIEQNKKPIVIMFVGVNGSGKTLAIAKIATLLKKYGKSSVMAAGD 150
Cdd:PRK14974 98 KKVKRGEdVEEIVKNALKEALLEVLSVGDLfDLIEEIKSKGKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGD 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 151 TFRAGAIEQLSIHAENIGVKIIKHGSGADPAAVAYDAIDHAKAKHKDVVLLDTAGRVQTNINLMDEMAKIKRVAKPNMII 230
Cdd:PRK14974 178 TFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVI 257
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1008837765 231 FVGDALSGNDAVEQAKRFNEIVGIDGVILTKVDTDAKGGSALSVAYTIGKPLLFVGIGQGYEDHIPFDPQWMIDNIFG 308
Cdd:PRK14974 258 FVGDALAGNDAVEQAREFNEAVGIDGVILTKVDADAKGGAALSIAYVIGKPILFLGVGQGYDDLIPFDPDWFVDKLLG 335
|
|
| FtsY |
COG0552 |
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular ... |
17-310 |
1.29e-122 |
|
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440318 [Multi-domain] Cd Length: 303 Bit Score: 353.17 E-value: 1.29e-122
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 17 KSIEEVVKAEKKPTpriseeklDDLLWDLEIGLLESDVAYSVIESIKKDIKEELRyasFERGKIGEVVEKVLKNAISHVL 96
Cdd:COG0552 18 EKLKSLFSGKKKID--------EDLLEELEELLIEADVGVETTEEIIEELRERVK---RKKLKDPEELKEALKEELLEIL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 97 KSNKLdfmEFIEQNKKPIVIMFVGVNGSGKTLAIAKIATLLKKYGKSSVMAAGDTFRAGAIEQLSIHAENIGVKIIKHGS 176
Cdd:COG0552 87 DPVDK---PLAIEEKKPFVILVVGVNGVGKTTTIGKLAHRLKAEGKSVLLAAGDTFRAAAIEQLEVWGERVGVPVIAQKE 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 177 GADPAAVAYDAIDHAKAKHKDVVLLDTAGRVQTNINLMDEMAKIKRVAK------PNMIIFVGDALSGNDAVEQAKRFNE 250
Cdd:COG0552 164 GADPAAVAFDAIQAAKARGADVVIIDTAGRLHNKKNLMEELKKIKRVIKkldpdaPHEVLLVLDATTGQNALSQAKVFNE 243
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 251 IVGIDGVILTKVDTDAKGGSALSVAYTIGKPLLFVGIGQGYEDHIPFDPQWMIDNIFGKS 310
Cdd:COG0552 244 AVGVTGIVLTKLDGTAKGGVVLAIADELGIPIKFIGVGEGIDDLRPFDAEEFVDALFGEE 303
|
|
| ftsY |
TIGR00064 |
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and ... |
39-307 |
4.86e-114 |
|
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 272883 [Multi-domain] Cd Length: 277 Bit Score: 330.76 E-value: 4.86e-114
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 39 DDLLWDLEIGLLESDVAYSVIESIKKDIKEEL-RYASFERGKIGEVVEKVLKNAISHVLKSNKLDfmEFIEQNKKPIVIM 117
Cdd:TIGR00064 4 EDFFEELEEILLESDVGYEVVEKIIEALKKELkGKKVKDAEKLKEILKEYLKEILKEDLLKNTDL--ELIVEENKPNVIL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 118 FVGVNGSGKTLAIAKIATLLKKYGKSSVMAAGDTFRAGAIEQLSIHAENIGVKIIKHGSGADPAAVAYDAIDHAKAKHKD 197
Cdd:TIGR00064 82 FVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARNID 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 198 VVLLDTAGRVQTNINLMDEMAKIKRVAK------PNMIIFVGDALSGNDAVEQAKRFNEIVGIDGVILTKVDTDAKGGSA 271
Cdd:TIGR00064 162 VVLIDTAGRLQNKVNLMDELKKIKRVIKkvdkdaPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGTAKGGII 241
|
250 260 270
....*....|....*....|....*....|....*.
gi 1008837765 272 LSVAYTIGKPLLFVGIGQGYEDHIPFDPQWMIDNIF 307
Cdd:TIGR00064 242 LSIAYELKLPIKFIGVGEKIDDLAPFDADWFVEALF 277
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
113-308 |
2.69e-99 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 290.08 E-value: 2.69e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 113 PIVIMFVGVNGSGKTLAIAKIATLLKKYGKSSVM-AAGDTFRAGAIEQLSIHAENIGVKIIKHGSGADPAAVAYDAIDHA 191
Cdd:smart00962 1 PGVILLVGPNGVGKTTTIAKLAARLKLKGGKKVLlVAADTFRAAAVEQLKTYAEILGVVPVAGGEGADPVAVAKDAVELA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 192 KAKHKDVVLLDTAGRVQTNINLMDEMAKIKRVAKPNMIIFVGDALSGNDAVEQAKRFNEIVGIDGVILTKVDTDAKGGSA 271
Cdd:smart00962 81 KARGYDVVLIDTAGRLHNDENLMEELKKIKRVIKPDEVLLVSDATTGQDAVEQAKAFNEALGLTGIILTKLDGTAKGGAA 160
|
170 180 190
....*....|....*....|....*....|....*..
gi 1008837765 272 LSVAYTIGKPLLFVGIGQGYEDHIPFDPQWMIDNIFG 308
Cdd:smart00962 161 LSIAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLLG 197
|
|
| FtsY |
cd17874 |
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle ... |
115-306 |
5.98e-99 |
|
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle (SRP) receptor (SR), is homologous to the SRP receptor alpha-subunit (SRalpha) of the eukaryotic SR. It interacts with the signal-recognition particle (SRP) and is required for the co-translational membrane targeting of proteins.
Pssm-ID: 349783 Cd Length: 199 Bit Score: 289.47 E-value: 5.98e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 115 VIMFVGVNGSGKTLAIAKIATLLKKYGKSSVMAAGDTFRAGAIEQLSIHAENIGVKIIKHGSGADPAAVAYDAIDHAKAK 194
Cdd:cd17874 2 VILFVGVNGVGKTTTIGKLAHYLKNQGKKVVLAAGDTFRAAAVEQLEEWAERLGVPVISQNEGADPAAVAFDAIQAAKAR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 195 HKDVVLLDTAGRVQTNINLMDEMAKIKRVAK------PNMIIFVGDALSGNDAVEQAKRFNEIVGIDGVILTKVDTDAKG 268
Cdd:cd17874 82 GIDVVLIDTAGRLHTKKNLMEELKKIKRVIKkkdpeaPHEVLLVLDATTGQNALEQAKEFNEAVGLTGIILTKLDGTAKG 161
|
170 180 190
....*....|....*....|....*....|....*...
gi 1008837765 269 GSALSVAYTIGKPLLFVGIGQGYEDHIPFDPQWMIDNI 306
Cdd:cd17874 162 GIVLSIADELKIPVKFVGVGEGIDDLRPFDPEAFVEAL 199
|
|
| PRK10416 |
PRK10416 |
signal recognition particle-docking protein FtsY; Provisional |
33-311 |
6.73e-98 |
|
signal recognition particle-docking protein FtsY; Provisional
Pssm-ID: 236686 [Multi-domain] Cd Length: 318 Bit Score: 291.23 E-value: 6.73e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 33 ISEEKLDDLLWD-LEIGLLESDVAYSVIESIKKDIKEELRyasFERGKIGEVVEKVLKNAISHVLK--SNKLDFmefieQ 109
Cdd:PRK10416 39 FAKKKIDEDLLEeLEELLIEADVGVETTEEIIEELRERVK---RKNLKDPEELKELLKEELAEILEpvEKPLNI-----E 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 110 NKKPIVIMFVGVNGSGKTLAIAKIATLLKKYGKSSVMAAGDTFRAGAIEQLSIHAENIGVKIIKHGSGADPAAVAYDAID 189
Cdd:PRK10416 111 EKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQ 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 190 HAKAKHKDVVLLDTAGRVQTNINLMDEMAKIKRVAK------PNMIIFVGDALSGNDAVEQAKRFNEIVGIDGVILTKVD 263
Cdd:PRK10416 191 AAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKkadpdaPHEVLLVLDATTGQNALSQAKAFHEAVGLTGIILTKLD 270
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 1008837765 264 TDAKGGSALSVAYTIGKPLLFVGIGQGYEDHIPFDPQWMIDNIFGKSE 311
Cdd:PRK10416 271 GTAKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAEEFVDALLGGED 318
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
115-306 |
6.86e-95 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 279.04 E-value: 6.86e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 115 VIMFVGVNGSGKTLAIAKIATLLKKYGKSSVMAAGDTFRAGAIEQLSIHAENIGVKIIKHGSGADPAAVAYDAIDHAKAK 194
Cdd:pfam00448 2 VILLVGLQGSGKTTTIAKLAAYLKKKGKKVLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKTGADPAAVAFDAVEKAKAE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 195 HKDVVLLDTAGRVQTNINLMDEMAKIKRVAKPNMIIFVGDALSGNDAVEQAKRFNEIVGIDGVILTKVDTDAKGGSALSV 274
Cdd:pfam00448 82 NYDVVLVDTAGRLQNDKNLMDELKKIKRVVAPDEVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDGDAKGGAALSI 161
|
170 180 190
....*....|....*....|....*....|..
gi 1008837765 275 AYTIGKPLLFVGIGQGYEDHIPFDPQWMIDNI 306
Cdd:pfam00448 162 VAETGKPIKFIGVGEKIDDLEPFDPERFVSRL 193
|
|
| Ffh |
COG0541 |
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular ... |
32-308 |
8.55e-82 |
|
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440307 [Multi-domain] Cd Length: 423 Bit Score: 253.40 E-value: 8.55e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 32 RISEEKLDDLLWDLEIGLLESDVAYSVIESIKKDIKEELryasfergkIGEVVEKVLKNAiSHVLK-------------S 98
Cdd:COG0541 21 RLTEENIKEALREVRRALLEADVNLKVVKDFIERVKERA---------LGEEVLKSLTPG-QQVIKivhdelvellggeN 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 99 NKLDFmefieQNKKPIVIMFVGVNGSGKTLAIAKIATLLKKYGKSSVMAAGDTFRAGAIEQLSIHAENIGVKIIKHGSGA 178
Cdd:COG0541 91 EELNL-----AKKPPTVIMMVGLQGSGKTTTAAKLAKYLKKKGKKPLLVAADVYRPAAIEQLKTLGEQIGVPVFPEEDGK 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 179 DPAAVAYDAIDHAKAKHKDVVLLDTAGRVQTNINLMDEMAKIKRVAKPNMIIFVGDALSGNDAVEQAKRFNEIVGIDGVI 258
Cdd:COG0541 166 DPVDIAKRALEYAKKNGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDETLLVVDAMTGQDAVNVAKAFNEALGLTGVI 245
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 1008837765 259 LTKVDTDAKGGSALSVAYTIGKPLLFVGIGQGYEDHIPFDPQWMIDNIFG 308
Cdd:COG0541 246 LTKLDGDARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFHPDRMASRILG 295
|
|
| SRP_G_like |
cd03115 |
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition ... |
115-300 |
7.22e-75 |
|
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognate receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349769 [Multi-domain] Cd Length: 193 Bit Score: 228.03 E-value: 7.22e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 115 VIMFVGVNGSGKTLAIAKIATLLKKYGKSSVMAAGDTFRAGAIEQLSIHAENIGVKIIKHGSGADPAAVAYDAIDHAKAK 194
Cdd:cd03115 2 VILLVGLQGSGKTTTLAKLARYYQEKGKKVLLIAADTFRAAAVEQLKTLAEKLGVPVFESYTGTDPASIAQEAVEKAKLE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 195 HKDVVLLDTAGRVQTNINLMDEMAKIKRVAKPNMIIFVGDALSGNDAVEQAKRFNEIVGIDGVILTKVDTDAKGGSALSV 274
Cdd:cd03115 82 GYDVLLVDTAGRLQKDEPLMEELKKVKEVESPDEVLLVLDATTGQEALSQAKAFNEAVGLTGVILTKLDGTAKGGAALSI 161
|
170 180
....*....|....*....|....*.
gi 1008837765 275 AYTIGKPLLFVGIGQGYEDHIPFDPQ 300
Cdd:cd03115 162 VAETKKPIKFIGVGEKPEDLEPFDPE 187
|
|
| SRalpha_C |
cd17876 |
C-terminal domain of signal recognition particle receptor alpha subunit; The ... |
115-306 |
1.53e-73 |
|
C-terminal domain of signal recognition particle receptor alpha subunit; The signal-recognition particle (SRP) receptor (SR) alpha-subunit (SRalpha) of the eukaryotic SR interacts with the signal-recognition particle (SRP) and is essential for the co-translational membrane targeting of proteins.
Pssm-ID: 349785 Cd Length: 204 Bit Score: 225.19 E-value: 1.53e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 115 VIMFVGVNGSGKTLAIAKIATLLKKYGKSSVMAAGDTFRAGAIEQLSIHAENIGVKIIKHGSGADPAAVAYDAIDHAKAK 194
Cdd:cd17876 2 VIVFCGVNGVGKSTNLAKIAYWLLSNGFRVLIAACDTFRSGAVEQLRTHARRLGVELYEKGYGKDPAAVAKEAIKYARDQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 195 HKDVVLLDTAGRVQTNINLMDEMAKIKRVAKPNMIIFVGDALSGNDAVEQAKRFNEIV----------GIDGVILTKVDT 264
Cdd:cd17876 82 GFDVVLIDTAGRMQNNEPLMRALAKLIKENNPDLVLFVGEALVGNDAVDQLKKFNQALadyspsdnprLIDGIVLTKFDT 161
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1008837765 265 -DAKGGSALSVAYTIGKPLLFVGIGQGYEDHIPFDPQWMIDNI 306
Cdd:cd17876 162 iDDKVGAALSMVYATGQPIVFVGTGQTYTDLKKLNVKAVVNSL 204
|
|
| SRP_G |
cd18539 |
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) ... |
115-306 |
6.17e-69 |
|
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349786 Cd Length: 193 Bit Score: 212.84 E-value: 6.17e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 115 VIMFVGVNGSGKTLAIAKIATLLKKYGKSSVMAAGDTFRAGAIEQLSIHAENIGVKIIKHGSGADPAAVAYDAIDHAKAK 194
Cdd:cd18539 2 VILLVGLQGSGKTTTAAKLALYLKKKGKKVLLVAADVYRPAAIEQLQTLGEQVGVPVFESGDGQSPVDIAKRALEKAKEE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 195 HKDVVLLDTAGRVQTNINLMDEMAKIKRVAKPNMIIFVGDALSGNDAVEQAKRFNEIVGIDGVILTKVDTDAKGGSALSV 274
Cdd:cd18539 82 GFDVVIVDTAGRLHIDEELMDELKEIKEVLNPDEVLLVVDAMTGQDAVNVAKAFNERLGLTGVVLTKLDGDARGGAALSI 161
|
170 180 190
....*....|....*....|....*....|..
gi 1008837765 275 AYTIGKPLLFVGIGQGYEDHIPFDPQWMIDNI 306
Cdd:cd18539 162 RHVTGKPIKFIGVGEKIEDLEPFHPDRMASRI 193
|
|
| PRK00771 |
PRK00771 |
signal recognition particle protein Srp54; Provisional |
32-308 |
5.03e-57 |
|
signal recognition particle protein Srp54; Provisional
Pssm-ID: 179118 [Multi-domain] Cd Length: 437 Bit Score: 190.03 E-value: 5.03e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 32 RISEEKLDDLLWDLEIGLLESDVAYSVIESIKKDIKEELRYasfergkigevvEKVLK--NAISHVLK---SNKLDFM-- 104
Cdd:PRK00771 17 RIDEKTVKEVVKDIQRALLQADVNVKLVKELSKSIKERALE------------EEPPKglTPREHVIKivyEELVKLLge 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 105 --EFIEQNKKPIVIMFVGVNGSGKTLAIAKIATLLKKYGKSSVMAAGDTFRAGAIEQLSIHAENIGVKIIKHGSGADPAA 182
Cdd:PRK00771 85 etEPLVLPLKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVE 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 183 VAYDAIDhaKAKHKDVVLLDTAGRVQTNINLMDEMAKIKRVAKPNMIIFVGDALSGNDAVEQAKRFNEIVGIDGVILTKV 262
Cdd:PRK00771 165 IAKEGLE--KFKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAFHEAVGIGGIIITKL 242
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 1008837765 263 DTDAKGGSALSVAYTIGKPLLFVGIGQGYEDHIPFDPQWMIDNIFG 308
Cdd:PRK00771 243 DGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLG 288
|
|
| SRP54_G |
cd17875 |
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) ... |
115-300 |
6.60e-53 |
|
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349784 Cd Length: 193 Bit Score: 171.99 E-value: 6.60e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 115 VIMFVGVNGSGKTLAIAKIATLLKKYGKSSVMAAGDTFRAGAIEQLSIHAENIGVKIIKHGSGADPAAVAYDAIDHAKAK 194
Cdd:cd17875 2 VIMFVGLQGSGKTTTAAKLAYYYQKKGYKVGLVCADTFRAGAFDQLKQNATKARVPFYGSYTEKDPVKIAKEGVEKFKKE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 195 HKDVVLLDTAGRVQTNINLMDEMAKIKRVAKPNMIIFVGDALSGNDAVEQAKRFNEIVGIDGVILTKVDTDAKGGSALSV 274
Cdd:cd17875 82 KFDIIIVDTSGRHKQEEELFEEMKQISDAVKPDEVILVIDASIGQAAEDQAKAFKEAVDIGSVIITKLDGHAKGGGALSA 161
|
170 180
....*....|....*....|....*.
gi 1008837765 275 AYTIGKPLLFVGIGQGYEDHIPFDPQ 300
Cdd:cd17875 162 VAATGAPIIFIGTGEHIDDLEPFDPK 187
|
|
| SRP54_euk |
TIGR01425 |
signal recognition particle protein SRP54; This model represents examples from the eukaryotic ... |
33-308 |
2.37e-44 |
|
signal recognition particle protein SRP54; This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Pssm-ID: 273615 [Multi-domain] Cd Length: 428 Bit Score: 156.53 E-value: 2.37e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 33 ISEEKLDDLLWDLEIGLLESDVAYSVIESIKKDIK-----EELRYASFERGKIGEVVEKVLKNAISHVLKSnkldfmeFI 107
Cdd:TIGR01425 22 IDEEVINTMLKEICTALLESDVNPKLVRQMRNNIKkkinlEDIASGINKRKLIQDAVFEELCNLVDPGVEA-------FT 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 108 EQNKKPIVIMFVGVNGSGKTLAIAKIATLLKKYGKSSVMAAGDTFRAGAIEQLSIHAENIGVKIIKHGSGADPAAVAYDA 187
Cdd:TIGR01425 95 PKKGKTCVIMFVGLQGAGKTTTCTKLAYYYKRRGFKPALVCADTFRAGAFDQLKQNATKAGIPFYGSYEESDPVKIASEG 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 188 IDHAKAKHKDVVLLDTAGRVQTNINLMDEMAKIKRVAKPNMIIFVGDALSGNDAVEQAKRFNEIVGIDGVILTKVDTDAK 267
Cdd:TIGR01425 175 VEKFRKEKFDIIIVDTSGRHKQEKELFEEMQQVREAIKPDSIIFVMDGSIGQAAFGQAKAFKDSVEVGSVIITKLDGHAK 254
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 1008837765 268 GGSALSVAYTIGKPLLFVGIGQGYEDHIPFDPQWMIDNIFG 308
Cdd:TIGR01425 255 GGGALSAVAATKSPIIFIGTGEHVDEFEIFDAEPFVSKLLG 295
|
|
| FlhF |
COG1419 |
Flagellar biosynthesis GTPase FlhF [Cell motility]; |
2-312 |
8.52e-40 |
|
Flagellar biosynthesis GTPase FlhF [Cell motility];
Pssm-ID: 441029 [Multi-domain] Cd Length: 361 Bit Score: 142.70 E-value: 8.52e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 2 EKSIETELEHTLRA-KKSIEEVVKAEKKPTPRISEEKldDLLWDLeigLLESDVAYSVIESIKKDIKEELRyasfergki 80
Cdd:COG1419 72 EEEELEELRRELAElKELLEEQLSGLAGESARLPPEL--AELLER---LLEAGVSPELARELLEKLPEDLS--------- 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 81 GEVVEKVLKNAISHVLKSNKLDFmefIEQNKkpiVIMFVGVNGSGKTLAIAKIATLLKKYGKSSVM---AagDTFRAGAI 157
Cdd:COG1419 138 AEEAWRALLEALARRLPVAEDPL---LDEGG---VIALVGPTGVGKTTTIAKLAARFVLRGKKKVAlitT--DTYRIGAV 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 158 EQLSIHAENIGVkiikhgsgadPAAVAYDAIDHAKA----KHKDVVLLDTAGRVQTNINLMDEMAKIKRVAKPNMIIFVg 233
Cdd:COG1419 210 EQLKTYARILGV----------PVEVAYDPEELKEAlerlRDKDLVLIDTAGRSPRDPELIEELKALLDAGPPIEVYLV- 278
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 234 daLSGN----DAVEQAKRFNEIvGIDGVILTKVDTDAKGGSALSVAYTIGKPLLFVGIGQGYEDHI-PFDPQWMIDNIFG 308
Cdd:COG1419 279 --LSATtkyeDLKEIVEAFSSL-GLDGLILTKLDETASLGSILNLLIRTGLPLSYITNGQRVPEDIeVADPERLARLLLG 355
|
....
gi 1008837765 309 KSEE 312
Cdd:COG1419 356 GLEE 359
|
|
| FlhF |
cd17873 |
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP) ... |
115-298 |
5.68e-31 |
|
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP)-type GTPase that is essential for the placement and assembly of polar flagella. It is similar to the 54 kd subunit (SRP54) of the signal recognition particle (SRP) that mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR).
Pssm-ID: 349782 [Multi-domain] Cd Length: 189 Bit Score: 114.95 E-value: 5.68e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 115 VIMFVGVNGSGKTLAIAKIATLLK-KYGKSSVMAAGDTFRAGAIEQLSIHAENIGVkiikhgsgadPAAVAYDAIDHAKA 193
Cdd:cd17873 2 VIALVGPTGVGKTTTLAKLAARYVlKKGKKVALITTDTYRIGAVEQLKTYAEIMGI----------PVEVAEDPEDLADA 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 194 ----KHKDVVLLDTAGRVQTNINLMDEMAKIKRVAKPNMIIFVGDA-LSGNDAVEQAKRFnEIVGIDGVILTKVDTDAKG 268
Cdd:cd17873 72 lerlSDRDLILIDTAGRSPRDKEQLEELKELLGAGEDIEVHLVLSAtTKAKDLKEIIERF-SPLGYRGLILTKLDETTSL 150
|
170 180 190
....*....|....*....|....*....|
gi 1008837765 269 GSALSVAYTIGKPLLFVGIGQgyedHIPFD 298
Cdd:cd17873 151 GSVLSVLAESQLPVSYVTTGQ----RVPED 176
|
|
| flhF |
PRK05703 |
flagellar biosynthesis protein FlhF; |
17-289 |
1.35e-28 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235570 [Multi-domain] Cd Length: 424 Bit Score: 113.84 E-value: 1.35e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 17 KSIEEVVKAEKKPTprISEEKLDDLLWDLEIGLLESDVAYSVIESIKKDIKEELryasferGKIGEVVEKVLKNAISHVL 96
Cdd:PRK05703 140 KELKNLLEDQLSGL--RQVERIPPEFAELYKRLKRSGLSPEIAEKLLKLLLEHM-------PPRERTAWRYLLELLANMI 210
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 97 KSNKLDFmefIEQNKkpiVIMFVGVNGSGKTLAIAKIATLLK-KYGKSSVmaaG----DTFRAGAIEQLSIHAENIGVKI 171
Cdd:PRK05703 211 PVRVEDI---LKQGG---VVALVGPTGVGKTTTLAKLAARYAlLYGKKKV---AlitlDTYRIGAVEQLKTYAKIMGIPV 281
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 172 IkhgsgadpaaVAYDAIDHAKA----KHKDVVLLDTAGRVQTNINLMDEMAKIKRVAKPNMIIF-VgdaLSGN----DAV 242
Cdd:PRK05703 282 E----------VVYDPKELAKAleqlRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYlV---LSATtkyeDLK 348
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 1008837765 243 EQAKRFNeIVGIDGVILTKVDTDAKGGSALSVAYTIGKPLLFVGIGQ 289
Cdd:PRK05703 349 DIYKHFS-RLPLDGLIFTKLDETSSLGSILSLLIESGLPISYLTNGQ 394
|
|
| FlhF |
TIGR03499 |
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility] |
16-205 |
1.16e-16 |
|
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility]
Pssm-ID: 274609 [Multi-domain] Cd Length: 282 Bit Score: 78.53 E-value: 1.16e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 16 KKSIEEVVKAEKKPTPRISEEKLDDLLWDLEIGLLESDVAYSVIESIKKDIKEELRYasfergkigEVVEKVLKNAISHV 95
Cdd:TIGR03499 110 RKELEALRELLERLLAGLAWLQRPPERAKLYERLLEAGVSEELARELLEKLPEDADA---------EDAWRWLREALEGM 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 96 LKSNKLDfmEFIEQNKKpiVIMFVGVNGSGKTLAIAKIATLLK-KYGKSSV-MAAGDTFRAGAIEQLSIHAENIGVkiik 173
Cdd:TIGR03499 181 LPVKPEE--DPILEQGG--VIALVGPTGVGKTTTLAKLAARFAlEHGKKKVaLITTDTYRIGAVEQLKTYAEILGI---- 252
|
170 180 190
....*....|....*....|....*....|....*.
gi 1008837765 174 hgsgadPAAVAYDAIDHAKA----KHKDVVLLDTAG 205
Cdd:TIGR03499 253 ------PVKVARDPKELREAldrlRDKDLILIDTAG 282
|
|
| flhF |
PRK11889 |
flagellar biosynthesis protein FlhF; |
6-295 |
4.08e-15 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 183360 [Multi-domain] Cd Length: 436 Bit Score: 75.49 E-value: 4.08e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 6 ETELEHTLRAKKSIEEVVKAEKKPTPrISEEKLDDLLWDLE--IGLLE-SDVAYSVIESIKKDIKEELRYASFERGKigE 82
Cdd:PRK11889 142 QTEETKVTKKQKAVKKVVPVKKEEVV-VKKEKQESVPFIIQkvIRMLEqNDVEQYFIHAYAEKLKVKFENATMITEE--E 218
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 83 VVEKVLKNAISHVLKSNKLDfmefieqnKKPIVIMFVGVNGSGKTLAIAKIATLLKKYGKSSVMAAGDTFRAGAIEQLSI 162
Cdd:PRK11889 219 VIEYILEDMRSHFNTENVFE--------KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQD 290
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 163 HAENIGVKIIkhgSGADPAAVAyDAIDHAKAKHK-DVVLLDTAGRVQTNINLMDEMAKIKRVAKPNMIIFVGDA-LSGND 240
Cdd:PRK11889 291 YVKTIGFEVI---AVRDEAAMT-RALTYFKEEARvDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSAsMKSKD 366
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 1008837765 241 AVEQAKRFNEIvGIDGVILTKVDTDAKGGSALSVAYTIGKPLLFVGIGQGYEDHI 295
Cdd:PRK11889 367 MIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDVKKNI 420
|
|
| flhF |
PRK14723 |
flagellar biosynthesis regulator FlhF; Provisional |
115-295 |
1.13e-14 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 237802 [Multi-domain] Cd Length: 767 Bit Score: 74.45 E-value: 1.13e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 115 VIMFVGVNGSGKTLAIAKIAT-LLKKYGKSSV-MAAGDTFRAGAIEQLSIHAENIGVkiikhgsgadPAAVAYDAIDH-- 190
Cdd:PRK14723 187 VLALVGPTGVGKTTTTAKLAArCVAREGADQLaLLTTDSFRIGALEQLRIYGRILGV----------PVHAVKDAADLrf 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 191 --AKAKHKDVVLLDTAGRVQTNINLMDEMAKIKRVAKPNMIIFV------GDALsgnDAVEQAKRFNEIVGIDGVILTKV 262
Cdd:PRK14723 257 alAALGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLlnaashGDTL---NEVVHAYRHGAGEDVDGCIITKL 333
|
170 180 190
....*....|....*....|....*....|...
gi 1008837765 263 DTDAKGGSALSVAYTIGKPLLFVGIGQGYEDHI 295
Cdd:PRK14723 334 DEATHLGPALDTVIRHRLPVHYVSTGQKVPEHL 366
|
|
| PRK12724 |
PRK12724 |
flagellar biosynthesis regulator FlhF; Provisional |
33-298 |
6.74e-14 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183703 [Multi-domain] Cd Length: 432 Bit Score: 71.53 E-value: 6.74e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 33 ISEEKLDDLLWDLEIGLLESDVAYSVIESIKKDIKEelRYASFERGKIGEVVEKVLKNAISHVlkSNKLDFMEFIEQNKK 112
Cdd:PRK12724 148 IVRKEKDSPLQRLGERLVREGMSQSYVEEMASKLEE--RLSPVDQGRNHNVTERAVTYLEERV--SVDSDLFSGTGKNQR 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 113 PiVIMFVGVNGSGKTLAIAKIATllkKY----GKSSVMAAGDTFRAGAIEQLSIHAENIGVKIikhgsgadpaavaYDAI 188
Cdd:PRK12724 224 K-VVFFVGPTGSGKTTSIAKLAA---KYflhmGKSVSLYTTDNYRIAAIEQLKRYADTMGMPF-------------YPVK 286
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 189 DHAKAKH------KDVVLLDTAGRVQTNINLMDEMAKIKRV-AKPNMI--IFVGDALSGNDAVEQAKRFNEIVGIDGVIL 259
Cdd:PRK12724 287 DIKKFKEtlardgSELILIDTAGYSHRNLEQLERMQSFYSCfGEKDSVenLLVLSSTSSYHHTLTVLKAYESLNYRRILL 366
|
250 260 270
....*....|....*....|....*....|....*....
gi 1008837765 260 TKVDTDAKGGSALSVAYTIGKPLLFVGIGQgyedHIPFD 298
Cdd:PRK12724 367 TKLDEADFLGSFLELADTYSKSFTYLSVGQ----EVPFD 401
|
|
| PRK12726 |
PRK12726 |
flagellar biosynthesis regulator FlhF; Provisional |
115-308 |
1.69e-13 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183704 [Multi-domain] Cd Length: 407 Bit Score: 70.54 E-value: 1.69e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 115 VIMFVGVNGSGKTLAIAKIATLLKKYGKSSVMAAGDTFRAGAIEQLSIHAENIGVKIIKHGSGAD-PAAVAY----DAID 189
Cdd:PRK12726 208 IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAElEEAVQYmtyvNCVD 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 190 HakakhkdvVLLDTAGRVQTNINLMDEMAKIKRVAKPNMIIFV-GDALSGNDAVEQAKRFNEIvGIDGVILTKVDTDAKG 268
Cdd:PRK12726 288 H--------ILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTfSSGMKSADVMTILPKLAEI-PIDGFIITKMDETTRI 358
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1008837765 269 GSALSVAYTIGKPLLFVGIGQGYEDHIpFDPQ--WMIDNIFG 308
Cdd:PRK12726 359 GDLYTVMQETNLPVLYMTDGQNITENI-FRPKsrWLAERFVG 399
|
|
| PRK12727 |
PRK12727 |
flagellar biosynthesis protein FlhF; |
115-289 |
1.06e-12 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 68.48 E-value: 1.06e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 115 VIMFVGVNGSGKTLAIAKIATLL--KKYGKSSVMAAGDTFRAGAIEQLSIHAENIGVKIIKHGSGADpaavaydaIDHAK 192
Cdd:PRK12727 352 VIALVGPTGAGKTTTIAKLAQRFaaQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAES--------LLDLL 423
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 193 AKHKD--VVLLDTAGRVQTNINLMDEMAKIKRVAKPNMIIFVGDALSGNDAVEQAKRFNEiVGIDGVILTKVDTDAKGGS 270
Cdd:PRK12727 424 ERLRDykLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAHFSDLDEVVRRFAH-AKPQGVVLTKLDETGRFGS 502
|
170
....*....|....*....
gi 1008837765 271 ALSVAYTIGKPLLFVGIGQ 289
Cdd:PRK12727 503 ALSVVVDHQMPITWVTDGQ 521
|
|
| flhF |
PRK06731 |
flagellar biosynthesis regulator FlhF; Validated |
82-295 |
1.76e-12 |
|
flagellar biosynthesis regulator FlhF; Validated
Pssm-ID: 75717 [Multi-domain] Cd Length: 270 Bit Score: 66.31 E-value: 1.76e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 82 EVVEKVLKNAISHVLKSNKLDfmefieqnKKPIVIMFVGVNGSGKTLAIAKIATLLKKYGKSSVMAAGDTFRAGAIEQLS 161
Cdd:PRK06731 52 EVIEYILEDMSSHFNTENVFE--------KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQ 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 162 IHAENIGVKIIkhgSGADPAAVAYDAIDHAKAKHKDVVLLDTAGRVQTNINLMDEMAKIKRVAKPNMI-IFVGDALSGND 240
Cdd:PRK06731 124 DYVKTIGFEVI---AVRDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYIcLTLSASMKSKD 200
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1008837765 241 AVEQAKRFNEIvGIDGVILTKVDTDAKGGSALSVAYTIGKPLLFVGIGQGYEDHI 295
Cdd:PRK06731 201 MIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDVKKNI 254
|
|
| flhF |
PRK14721 |
flagellar biosynthesis regulator FlhF; Provisional |
105-312 |
3.35e-12 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173184 [Multi-domain] Cd Length: 420 Bit Score: 66.51 E-value: 3.35e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 105 EFIEQNKkpiVIMFVGVNGSGKTLAIAKIAT-LLKKYGKSSV-MAAGDTFRAGAIEQLSIHAENIGVKIIKHGSGADPAA 182
Cdd:PRK14721 186 EIIEQGG---VYALIGPTGVGKTTTTAKLAArAVIRHGADKVaLLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQL 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 183 vaydAIDHAKAKHkdVVLLDTAGRVQTNINLMDEMAKIKRVAKPNMIIFVGDALSGNDAVEQAKRFNEIVGIDGVILTKV 262
Cdd:PRK14721 263 ----MLHELRGKH--MVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQGHGIHGCIITKV 336
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1008837765 263 DTDAKGGSALSVAYTIGKPLLFVGIGQGY-EDHIPFDPQWMIDNIFGKSEE 312
Cdd:PRK14721 337 DEAASLGIALDAVIRRKLVLHYVTNGQKVpEDLHEANSRYLLHRIFKPSRE 387
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
112-233 |
4.49e-11 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 60.08 E-value: 4.49e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 112 KPIVIMFVGVNGSGKTLAIAKIATLLKKYGKSSVMAAGDTFRAGAIEQLSIHAENIGvkiikhGSGADPAAVAYDAIDHA 191
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGK------KASGSGELRLRLALALA 74
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1008837765 192 KAKHKDVVLLDTAGRVQTNINLMDEMAKIKRVAKPNMIIFVG 233
Cdd:smart00382 75 RKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKN 116
|
|
| flhF |
PRK14722 |
flagellar biosynthesis regulator FlhF; Provisional |
115-289 |
1.11e-09 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173185 [Multi-domain] Cd Length: 374 Bit Score: 58.58 E-value: 1.11e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 115 VIMFVGVNGSGKTLAIAKIAT-LLKKYGKSSV-MAAGDTFRAGAIEQLSIHAENIGVKIIKHGSGADPaavaydAIDHAK 192
Cdd:PRK14722 139 VFALMGPTGVGKTTTTAKLAArCVMRFGASKVaLLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDL------QLALAE 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 193 AKHKDVVLLDTAGRVQTNINLMDEMAKIKRVAKPNMIIFVGDALSGNDAV-EQAKRFNEIVG--------IDGVILTKVD 263
Cdd:PRK14722 213 LRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLnEVVQAYRSAAGqpkaalpdLAGCILTKLD 292
|
170 180
....*....|....*....|....*.
gi 1008837765 264 TDAKGGSALSVAYTIGKPLLFVGIGQ 289
Cdd:PRK14722 293 EASNLGGVLDTVIRYKLPVHYVSTGQ 318
|
|
| flhF |
PRK06995 |
flagellar biosynthesis protein FlhF; |
119-289 |
7.26e-09 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235904 [Multi-domain] Cd Length: 484 Bit Score: 56.51 E-value: 7.26e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 119 VGVNGSGKTLAIAKIA---TLlkKYGKSSV-MAAGDTFRAGAIEQLSIHAENIGVKIikHgsgadpaAVAyDAIDHAKA- 193
Cdd:PRK06995 262 MGPTGVGKTTTTAKLAarcVM--RHGASKVaLLTTDSYRIGGHEQLRIYGKILGVPV--H-------AVK-DAADLRLAl 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 194 ---KHKDVVLLDTAGRVQTNINLMDEMA-------KIKRV----AKPNmiifvGDALsgNDAVEQAKRfneiVGIDGVIL 259
Cdd:PRK06995 330 selRNKHIVLIDTIGMSQRDRMVSEQIAmlhgagaPVKRLlllnATSH-----GDTL--NEVVQAYRG----PGLAGCIL 398
|
170 180 190
....*....|....*....|....*....|
gi 1008837765 260 TKVDTDAKGGSALSVAYTIGKPLLFVGIGQ 289
Cdd:PRK06995 399 TKLDEAASLGGALDVVIRYKLPLHYVSNGQ 428
|
|
| PRK12723 |
PRK12723 |
flagellar biosynthesis regulator FlhF; Provisional |
9-289 |
7.99e-09 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183702 [Multi-domain] Cd Length: 388 Bit Score: 56.06 E-value: 7.99e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 9 LEHTLRAKKSIEEVVKAEKKPTPRISEEKLDDLLwdleiglLESDVAYSVIESIKKDIKEELRYASFERgkigevVEKVL 88
Cdd:PRK12723 85 IEDVLKEVKSLKNELAHKKEEINHPTILKIEDIL-------RENDFSESYIKDINEFIKKEFSLSDLDD------YDKVR 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 89 KNAISHVLKSNKLDFMefIEQNKKPIVIMFVGVNGSGKTLAIAKIATLLKKYGKSSVMAAG----DTFRAGAIEQLSIHA 164
Cdd:PRK12723 152 DSVIIYIAKTIKCSGS--IIDNLKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKiitiDNYRIGAKKQIQTYG 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008837765 165 ENIGVKIIKHGSGADPAAVAYDaidhakAKHKDVVLLDTAGRVQTNINLMDEMAKIKRVA--KPNMIIFVGDALSGNDAV 242
Cdd:PRK12723 230 DIMGIPVKAIESFKDLKEEITQ------SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACgrDAEFHLAVSSTTKTSDVK 303
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 1008837765 243 EQAKRFnEIVGIDGVILTKVDTDAKGGSALSVAYTIGKPLLFVGIGQ 289
Cdd:PRK12723 304 EIFHQF-SPFSYKTVIFTKLDETTCVGNLISLIYEMRKEVSYVTDGQ 349
|
|
| SRP54_N |
smart00963 |
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle ... |
32-96 |
6.85e-07 |
|
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species.
Pssm-ID: 214941 [Multi-domain] Cd Length: 77 Bit Score: 46.01 E-value: 6.85e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1008837765 32 RISEEKLDDLLWDLEIGLLESDVAYSVIESIKKDIKEELRYASFERGKIGEVVEKVLKNAISHVL 96
Cdd:smart00963 13 FLTEKDDEELLEELEEALLEADVGVEVVKEIIERVKEKAKGEVLKGLTPKQEVKKILKEELVKIL 77
|
|
| SRP54_N |
pfam02881 |
SRP54-type protein, helical bundle domain; |
17-92 |
6.89e-06 |
|
SRP54-type protein, helical bundle domain;
Pssm-ID: 460734 [Multi-domain] Cd Length: 75 Bit Score: 43.22 E-value: 6.89e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1008837765 17 KSIEEVVKAEKKpTPRISEEKLDDLLWDLEIGLLESDVAYSVIESIKKDIKEELryASFERGKIGEVVEKVLKNAI 92
Cdd:pfam02881 3 EKLSSLFKGLRG-KGKIDEEDLEEALKELEEALLEADVGVEVVKKIIERLREKA--VGEKKLKPPQEVKKILKEEL 75
|
|
| |
