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Conserved domains on  [gi|71996103|ref|NP_001021806|]
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Conserved oligomeric Golgi complex subunit 3 [Caenorhabditis elegans]

Protein Classification

conserved oligomeric Golgi complex subunit 3( domain architecture ID 10514189)

conserved oligomeric Golgi complex subunit 3 (COG3) is a component of the conserved oligomeric Golgi complex which is composed of eight different subunits and is required for normal Golgi morphology and localization

Gene Ontology:  GO:0006886|GO:0006486|GO:0006888|GO:0006886|GO:0007030

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Sec34 pfam04136
Sec34-like family; Sec34 and Sec35 form a sub-complex, in a seven protein complex that ...
 79-205 2.02e-35

Sec34-like family; Sec34 and Sec35 form a sub-complex, in a seven protein complex that includes Dor1 (pfam04124). This complex is thought to be important for tethering vesicles to the Golgi.


:

Pssm-ID: 461190  Cd Length: 146  Bit Score: 131.08  E-value: 2.02e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71996103    79 QIDNSKATMNELREAYESVSSRTCSLHDACDRALAEQTSLSTGSQLIKTNLYYFKQADAIMKKLSVAKL-MVTGHSFAAI 157
Cdd:pfam04136  18 QTDETLDLLSSLLESFNSVSEKTSSFHEACEQLLEEQRRLSELAEEINERLHYFDELDPITRRLNSPGSsLVNSESFKEM 97

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 71996103   158 LVSIDECLTYLRAHPEYKESEAYISKFEQCLSRAMTWVRVAVLADLEA 205
Cdd:pfam04136  98 LSKLDECIDFLESHPNFKEAETYLIRFRQCLTRALTLIKNYFVNTLKE 145
 
Name Accession Description Interval E-value
Sec34 pfam04136
Sec34-like family; Sec34 and Sec35 form a sub-complex, in a seven protein complex that ...
 79-205 2.02e-35

Sec34-like family; Sec34 and Sec35 form a sub-complex, in a seven protein complex that includes Dor1 (pfam04124). This complex is thought to be important for tethering vesicles to the Golgi.


Pssm-ID: 461190  Cd Length: 146  Bit Score: 131.08  E-value: 2.02e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71996103    79 QIDNSKATMNELREAYESVSSRTCSLHDACDRALAEQTSLSTGSQLIKTNLYYFKQADAIMKKLSVAKL-MVTGHSFAAI 157
Cdd:pfam04136  18 QTDETLDLLSSLLESFNSVSEKTSSFHEACEQLLEEQRRLSELAEEINERLHYFDELDPITRRLNSPGSsLVNSESFKEM 97

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 71996103   158 LVSIDECLTYLRAHPEYKESEAYISKFEQCLSRAMTWVRVAVLADLEA 205
Cdd:pfam04136  98 LSKLDECIDFLESHPNFKEAETYLIRFRQCLTRALTLIKNYFVNTLKE 145
 
Name Accession Description Interval E-value
Sec34 pfam04136
Sec34-like family; Sec34 and Sec35 form a sub-complex, in a seven protein complex that ...
 79-205 2.02e-35

Sec34-like family; Sec34 and Sec35 form a sub-complex, in a seven protein complex that includes Dor1 (pfam04124). This complex is thought to be important for tethering vesicles to the Golgi.


Pssm-ID: 461190  Cd Length: 146  Bit Score: 131.08  E-value: 2.02e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71996103    79 QIDNSKATMNELREAYESVSSRTCSLHDACDRALAEQTSLSTGSQLIKTNLYYFKQADAIMKKLSVAKL-MVTGHSFAAI 157
Cdd:pfam04136  18 QTDETLDLLSSLLESFNSVSEKTSSFHEACEQLLEEQRRLSELAEEINERLHYFDELDPITRRLNSPGSsLVNSESFKEM 97

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 71996103   158 LVSIDECLTYLRAHPEYKESEAYISKFEQCLSRAMTWVRVAVLADLEA 205
Cdd:pfam04136  98 LSKLDECIDFLESHPNFKEAETYLIRFRQCLTRALTLIKNYFVNTLKE 145
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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