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Conserved domains on  [gi|72000244|ref|NP_001024090|]
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Protein quiver [Caenorhabditis elegans]

Protein Classification

Ly-6-related family protein( domain architecture ID 10534954)

Ly-6-related family protein may be required for olfaction

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ly-6_related pfam06579
Caenorhabditis elegans ly-6-related protein; This family consists of several Caenorhabditis ...
 34-156 2.00e-42

Caenorhabditis elegans ly-6-related protein; This family consists of several Caenorhabditis elegans specific ly-6-related HOT and ODR proteins. These proteins are involved in the olfactory system. Odr-2 mutants are known to be defective in the ability to chemotax to odorants that are recognized by the two AWC olfactory neurons. Odr-2 encodes a membrane-associated protein related to the Ly-6 superfamily of GPI-linked signaling proteins.


:

Pssm-ID: 399524  Cd Length: 125  Bit Score: 137.86  E-value: 2.00e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72000244    34 CMSPYLEDHYPYISHLYRKPLSFDTHCDKHSLEtSYLYSKNCSDMCVTLRINDVVGGRRR-HGYMRGCLSDL--HGYN-H 109
Cdd:pfam06579   1 CMSEYYEALWPYLSRIYNEPKNFTDRCDDPQLS-SHIPTVPCSSICVTLFEPDVIAGVRIgGKYIRGCADSVfrHGFNaP 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 72000244   110 SLIRTLAERQGCLDTTARELFLPTAQRQeLEPSRLSLCACHNNLCNF 156
Cdd:pfam06579  80 RTLRAFHRDDICRDLPASQLFPPERGDR-PESSTVQLCSCYGDRCNG 125
 
Name Accession Description Interval E-value
Ly-6_related pfam06579
Caenorhabditis elegans ly-6-related protein; This family consists of several Caenorhabditis ...
 34-156 2.00e-42

Caenorhabditis elegans ly-6-related protein; This family consists of several Caenorhabditis elegans specific ly-6-related HOT and ODR proteins. These proteins are involved in the olfactory system. Odr-2 mutants are known to be defective in the ability to chemotax to odorants that are recognized by the two AWC olfactory neurons. Odr-2 encodes a membrane-associated protein related to the Ly-6 superfamily of GPI-linked signaling proteins.


Pssm-ID: 399524  Cd Length: 125  Bit Score: 137.86  E-value: 2.00e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72000244    34 CMSPYLEDHYPYISHLYRKPLSFDTHCDKHSLEtSYLYSKNCSDMCVTLRINDVVGGRRR-HGYMRGCLSDL--HGYN-H 109
Cdd:pfam06579   1 CMSEYYEALWPYLSRIYNEPKNFTDRCDDPQLS-SHIPTVPCSSICVTLFEPDVIAGVRIgGKYIRGCADSVfrHGFNaP 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 72000244   110 SLIRTLAERQGCLDTTARELFLPTAQRQeLEPSRLSLCACHNNLCNF 156
Cdd:pfam06579  80 RTLRAFHRDDICRDLPASQLFPPERGDR-PESSTVQLCSCYGDRCNG 125
 
Name Accession Description Interval E-value
Ly-6_related pfam06579
Caenorhabditis elegans ly-6-related protein; This family consists of several Caenorhabditis ...
 34-156 2.00e-42

Caenorhabditis elegans ly-6-related protein; This family consists of several Caenorhabditis elegans specific ly-6-related HOT and ODR proteins. These proteins are involved in the olfactory system. Odr-2 mutants are known to be defective in the ability to chemotax to odorants that are recognized by the two AWC olfactory neurons. Odr-2 encodes a membrane-associated protein related to the Ly-6 superfamily of GPI-linked signaling proteins.


Pssm-ID: 399524  Cd Length: 125  Bit Score: 137.86  E-value: 2.00e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 72000244    34 CMSPYLEDHYPYISHLYRKPLSFDTHCDKHSLEtSYLYSKNCSDMCVTLRINDVVGGRRR-HGYMRGCLSDL--HGYN-H 109
Cdd:pfam06579   1 CMSEYYEALWPYLSRIYNEPKNFTDRCDDPQLS-SHIPTVPCSSICVTLFEPDVIAGVRIgGKYIRGCADSVfrHGFNaP 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 72000244   110 SLIRTLAERQGCLDTTARELFLPTAQRQeLEPSRLSLCACHNNLCNF 156
Cdd:pfam06579  80 RTLRAFHRDDICRDLPASQLFPPERGDR-PESSTVQLCSCYGDRCNG 125
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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