|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
356-771 |
3.82e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 60.72 E-value: 3.82e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 356 QERLEQLEGKLLIYESSGETQARHLAQRLQRELQLEKDLKELADRVELLIEQNAQLEEAKCEFEEAENDTRLHLQRNEVE 435
Cdd:COG1196 343 EEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEE 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 436 LEILRQRNVELEFGKEALGAKYQDCRAEVLILREDLAAAETQLEHLQAERKQARKELQDLRRSLPLLLIFRLLSLAKMGN 515
Cdd:COG1196 423 LEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEAD 502
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 516 EESSPGG---------SPRLSSGYTSSIHQDRDFSAKIQTTEFDLGQAGFTDSGE--EREIVYLKEEVKSLRSQLKELNA 584
Cdd:COG1196 503 YEGFLEGvkaalllagLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEvaAAAIEYLKAAKAGRATFLPLDKI 582
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 585 RHYEAMETADSHWVD------LEQQYKEREEAQQAKEASLKQKIAQLQDCLREDSRAATEKIQQLE-----EGELSLKSC 653
Cdd:COG1196 583 RARAALAAALARGAIgaavdlVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREvtlegEGGSAGGSL 662
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 654 LVRMTKEHRDLLTENRTLQCSLESLMAKMEKEAEHKmplTEALENERRKTQALMDDLIFAKKVQQNTEDQLRQETDALRT 733
Cdd:COG1196 663 TGGSRRELLAALLEAEAELEELAERLAEEELELEEA---LLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLE 739
|
410 420 430
....*....|....*....|....*....|....*...
gi 78706710 734 QIFNIKKDYLHIEVTNGELKEEVGTLENKIRQMENQMR 771
Cdd:COG1196 740 ELLEEEELLEEEALEELPEPPDLEELERELERLEREIE 777
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
355-651 |
6.25e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.95 E-value: 6.25e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 355 YQERLEQLEGKLLiyessgetqARHLAQRLQRELQLEKDLKELADRVELLIEQNAQLEEAKCEFEEAENDTRLHLQRNEV 434
Cdd:COG1196 218 LKEELKELEAELL---------LLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQA 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 435 ELEILRQRNVELEFGKEALGAKYQDCRAEVLILREDLAAAETQLEHLQAERKQARKELQDLRRSLPLLLIFRLLSLAKMG 514
Cdd:COG1196 289 EEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALL 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 515 NEESSpggsprlssgytssihqdrdfSAKIQTTEFDLGQAGFTDSGEEREIVYLKEEVKSLRSQLKELNARHYEAMETAD 594
Cdd:COG1196 369 EAEAE---------------------LAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELE 427
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 78706710 595 SHWVDLEQQYKEREEAQQAKEASLKQKIAQLQDcLREDSRAATEKIQQLEEGELSLK 651
Cdd:COG1196 428 EALAELEEEEEEEEEALEEAAEEEAELEEEEEA-LLELLAELLEEAALLEAALAELL 483
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
386-706 |
1.40e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.79 E-value: 1.40e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 386 RELQLEKDLKELADRVELLIEQNAQLEEAKCEFEEAENDtrlhLQRNEVELEILRQRNVELEFGKEALGAKYQDCRAEVL 465
Cdd:COG1196 216 RELKEELKELEAELLLLKLRELEAELEELEAELEELEAE----LEELEAELAELEAELEELRLELEELELELEEAQAEEY 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 466 ILREDLAAAETQLEHLQAERKQARKELQDLRrslplllifrllslakmgneesspggsprlssgytssihqdrdfsAKIQ 545
Cdd:COG1196 292 ELLAELARLEQDIARLEERRRELEERLEELE---------------------------------------------EELA 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 546 TTEFDLGQAGFTDSGEEREIVYLKEEVKSLRSQLKELNARHYEA---METADSHWVDLEQQYKEREEAQQAKEASLKQKI 622
Cdd:COG1196 327 ELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAeaeLAEAEEELEELAEELLEALRAAAELAAQLEELE 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 623 AQLQDCLREDSRAATEK------IQQLEEGELSLKSCLVRMTKEHRDLLTENRTLQCSLESLMAKMEKEAEHKMPLTEAL 696
Cdd:COG1196 407 EAEEALLERLERLEEELeeleeaLAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEEL 486
|
330
....*....|
gi 78706710 697 ENERRKTQAL 706
Cdd:COG1196 487 AEAAARLLLL 496
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
351-626 |
1.65e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.41 E-value: 1.65e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 351 HLQFYQERLEQLEGKLLIYESSGETQARHLAQRLQRELQLEKDLKELADRVELLIEQNAQLEEAKCEFEEAENDTRLHLQ 430
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRR 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 431 RNEVELEILRQRNVELEFGKEALGAKYQDCRAEVLILREDLAAAETQLEHLQAERKQARKELQDLRRSLPLLLIFRLLSL 510
Cdd:COG1196 313 ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEAL 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 511 AKMGNEEsspggsprlssgytSSIHQDRDFSAKIQTTEFDLGQAGFTDSGEEREIVYLKEEVKSLRSQLKELNARHYEAM 590
Cdd:COG1196 393 RAAAELA--------------AQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEE 458
|
250 260 270
....*....|....*....|....*....|....*.
gi 78706710 591 ETADSHWVDLEQQYKEREEAQQAKEASLKQKIAQLQ 626
Cdd:COG1196 459 EALLELLAELLEEAALLEAALAELLEELAEAAARLL 494
|
|
| JAKMIP_CC3 |
pfam16034 |
JAKMIP CC3 domain; This domain is found at the C-terminus of proteins belonging to the JAKMIP ... |
131-210 |
4.22e-08 |
|
JAKMIP CC3 domain; This domain is found at the C-terminus of proteins belonging to the JAKMIP family (Janus kinase and microtubule-interacting proteins) and is predicted to be a coiled coil. It interacts with the Janus family kinases Tyk2 and Jak1.
Pssm-ID: 464986 [Multi-domain] Cd Length: 199 Bit Score: 54.50 E-value: 4.22e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 131 EAEMYQKENERLQTEVQLMKQELDAAEKAAISRA-------KKQAQIG---ELMQRIKELEEMQSSLEDEASELREQNEL 200
Cdd:pfam16034 101 DAEREAKTREQLQAELRRAQSRIEDLESALAQKGqdskwveEKQALIRrnqELVEKIRIMEQEEGRLKNEIQDARDQNEL 180
|
90
....*....|
gi 78706710 201 LEFRILELED 210
Cdd:pfam16034 181 LEFRILELEE 190
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
562-803 |
1.06e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.84 E-value: 1.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 562 EREIVYLKEEVKSLRSQLKELNARHYEA---METADSHWVDLEQQ---YKEREEAQQAKEASLKQKIAQL---QDCLRED 632
Cdd:TIGR02169 687 KRELSSLQSELRRIENRLDELSQELSDAsrkIGEIEKEIEQLEQEeekLKERLEELEEDLSSLEQEIENVkseLKELEAR 766
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 633 SRAATEKIQQLEEGELSLKSCLVR-MTKEHRDLLTENRTLQCSLESLMAKMEKEAEHKMPLTEALENERRKTQALMDDLi 711
Cdd:TIGR02169 767 IEELEEDLHKLEEALNDLEARLSHsRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDL- 845
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 712 fakkvqQNTEDQLRQETDALRTQIFNIKKDYLHIEVTNGELKEEVGTLENKIRQMENQMRDSEERARCLEDELRTKDEQC 791
Cdd:TIGR02169 846 ------KEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRL 919
|
250
....*....|..
gi 78706710 792 QLLERKLGVMPE 803
Cdd:TIGR02169 920 SELKAKLEALEE 931
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
409-710 |
2.26e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.06 E-value: 2.26e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 409 AQLEEAKCEFEEAENDTRLHLQRNEVELEILRQRNVELEFGKEALGAKYQDCRAEVLILREDLAAAETQLEHLQAERKQA 488
Cdd:TIGR02168 680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTEL 759
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 489 RKELQDLRRSLPLLLIFRLLSLAKMGNEESSPGgspRLSSGYTSSIHQDRDFSAKIQTTEFDLGQAGFTDSGEEREIVYL 568
Cdd:TIGR02168 760 EAEIEELEERLEEAEEELAEAEAEIEELEAQIE---QLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAAT 836
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 569 KEEVKSLRSQLKELNARHYEAMETADSHWVDLEQQYKEREEAQQAKE------ASLKQKIAQLQDCLREDSRAATEKIQQ 642
Cdd:TIGR02168 837 ERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERAsleealALLRSELEELSEELRELESKRSELRRE 916
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 78706710 643 LEEGELSLKSCLVRMTKehrdllTENRtLQCSLESLMAKMEKEAEHKMPLTEALENERRKTQALMDDL 710
Cdd:TIGR02168 917 LEELREKLAQLELRLEG------LEVR-IDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRL 977
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
356-646 |
2.71e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.68 E-value: 2.71e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 356 QERLEQLEGKLLIYESSGETQARHLAQRLQRELQLEKDLKELADRVELLIEQNAQLEEAKCEFEEAENDTRLhlqrnevE 435
Cdd:TIGR02168 697 EKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEE-------R 769
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 436 LEILRQRNVELEFGKEALGAKYQDCRAEVLILREDLAAAETQLEHLQAERKQARKELQDLRRSLPLLLIFRLLSLAKMGN 515
Cdd:TIGR02168 770 LEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEE 849
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 516 EESSpggsprlSSGYTSSIHQDRDFSAKIqttefdlgqagftdsgeEREIVYLKEEVKSLRSQLKELNARHYEAMET--- 592
Cdd:TIGR02168 850 LSED-------IESLAAEIEELEELIEEL-----------------ESELEALLNERASLEEALALLRSELEELSEElre 905
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 78706710 593 ADSHWVDLEQQYKEREEAQ---QAKEASLKQKIAQLQDCLREDSRAATEKIQQLEEG 646
Cdd:TIGR02168 906 LESKRSELRRELEELREKLaqlELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENK 962
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
395-773 |
3.86e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 54.30 E-value: 3.86e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 395 KELADRVELLIEQNAQLEEAKCEFEEAEndtrLHLQRNEVELEILRQRNVELEFGKEALgAKYQDCRA-----EVLILRE 469
Cdd:TIGR02169 156 RKIIDEIAGVAEFDRKKEKALEELEEVE----ENIERLDLIIDEKRQQLERLRREREKA-ERYQALLKekreyEGYELLK 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 470 DLAAAETQLEHLQAERKQARKELQDL--RRSLPLLLIFRLLSLAKMGNEESSPGGSPRLssgytssihqdRDFSAKIQTT 547
Cdd:TIGR02169 231 EKEALERQKEAIERQLASLEEELEKLteEISELEKRLEEIEQLLEELNKKIKDLGEEEQ-----------LRVKEKIGEL 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 548 EFDLGQAgftdsgeEREIVYLKEEVKSLRSQLKELNARHYEAMETADSHWVDLEQQYKERE---EAQQAKEASLKQKIAQ 624
Cdd:TIGR02169 300 EAEIASL-------ERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDkltEEYAELKEELEDLRAE 372
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 625 LQDcLREDSRAATEKIQQLEEGelslkscLVRMTKEHRDLLTENRTLQcslESLMAKMEKEAEHKMPLtEALENERRKTQ 704
Cdd:TIGR02169 373 LEE-VDKEFAETRDELKDYREK-------LEKLKREINELKRELDRLQ---EELQRLSEELADLNAAI-AGIEAKINELE 440
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 78706710 705 ALMDDLIFAKKVQQNTEDQLRQETDALRTQIFNIKKDYLHIEVTNGELKEEVGTLENKIRQMENQMRDS 773
Cdd:TIGR02169 441 EEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGG 509
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
356-795 |
1.55e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 51.96 E-value: 1.55e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 356 QERLEQLEGKLLIYESSGETQARHLAQRLQRELQLEKDLKELADRVEL-------LIEQNAQLEEAKCEFEEAENDTRLH 428
Cdd:PRK02224 257 EAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLddadaeaVEARREELEDRDEELRDRLEECRVA 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 429 LQRNEVELEILRQ-------RNVELEFGKEALGAKYQDCRAEVLILREDLAAAETQLEHLQA-------ERKQARKELQD 494
Cdd:PRK02224 337 AQAHNEEAESLREdaddleeRAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRErfgdapvDLGNAEDFLEE 416
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 495 LRRSLPLLLIFRLLSLAKMGNEESSPGGSPRLSSgytssihqdrdfSAKIQTTEFDLGQAGFTDSGEERE--IVYLKEEV 572
Cdd:PRK02224 417 LREERDELREREAELEATLRTARERVEEAEALLE------------AGKCPECGQPVEGSPHVETIEEDRerVEELEAEL 484
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 573 KSLRSQLKELNARH---YEAMETAD---------SHWVDLEQQYKEREEAQQAKEASLKQKIAQLQDCLREDSRAATEKI 640
Cdd:PRK02224 485 EDLEEEVEEVEERLeraEDLVEAEDrierleerrEDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAE 564
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 641 QQLEEGELSLKSCLVRMT--KEHRDLLTENRTLQCSLESLMAKMEKEAEHKMPLTEaLENERRKTQALMDDLI--FAKKV 716
Cdd:PRK02224 565 EEAEEAREEVAELNSKLAelKERIESLERIRTLLAAIADAEDEIERLREKREALAE-LNDERRERLAEKRERKreLEAEF 643
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 78706710 717 QQNTEDQLRQETDALRTQIFNIKKDYLHIEVTNGELKEEVGTLENKIRQMENqmrdseerarcLEDELRTKDEQCQLLE 795
Cdd:PRK02224 644 DEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEE-----------LRERREALENRVEALE 711
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
123-772 |
3.57e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.09 E-value: 3.57e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 123 QDLDKLQKEAEMYQKENERLQTEVQLMKQELDAAEKAAISRAKK----QAQIGELMQRIKELEEMQSSLEDEASELREQN 198
Cdd:COG1196 246 AELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEeyelLAELARLEQDIARLEERRRELEERLEELEEEL 325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 199 ELLEFRILELEDDSDKMESTCEGHCQSLQDLLEQSAQRLEDRDKRCLQQLLQCVQQLDLdtmmpgdQNRTETPKRHNSTH 278
Cdd:COG1196 326 AELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEEL-------AEELLEALRAAAEL 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 279 SHSHSHSHSQSHNHrivatvqpysncatptapptpskrhcnqvsswqssslsesgvfvecdllsnpnpighphlqfyQER 358
Cdd:COG1196 399 AAQLEELEEAEEAL---------------------------------------------------------------LER 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 359 LEQLEGKLLIYESSGETQARHLAQRLQRELQLEKDLKELADRVELLIEQNAQLEEAKCEFEEAENDTRLHLQRNEVELEI 438
Cdd:COG1196 416 LERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLL 495
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 439 LRQRNVELEF-----GKEALGAKYQDCRAEVLILREDLAAAETQLEHLQAER------------KQARKELQDLRRSLPL 501
Cdd:COG1196 496 LLEAEADYEGflegvKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAAlqnivveddevaAAAIEYLKAAKAGRAT 575
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 502 LLIFRLLSLAKMGNEESSPGGSPRLSSGYTSSIHQDRDFSAKIQTTEFDLGQAGFTDSGEEREIVYLKEEVKSLRSQLKE 581
Cdd:COG1196 576 FLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEG 655
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 582 LNARhyeAMETADShwvdlEQQYKEREEAQQAKEASLKQKIAQLQDCLREDSRAATEKIQQLEEGELSLKSCLVRMTKEH 661
Cdd:COG1196 656 GSAG---GSLTGGS-----RRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALE 727
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 662 RDLLTENR---TLQCSLESLMAKMEKEAEHKMPLTEALENERRKTQALMDDLifaKKVQQNTEDQLRQET---DALRTQi 735
Cdd:COG1196 728 EQLEAEREellEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL---GPVNLLAIEEYEELEeryDFLSEQ- 803
|
650 660 670
....*....|....*....|....*....|....*..
gi 78706710 736 fniKKDylhievtngeLKEEVGTLENKIRQMENQMRD 772
Cdd:COG1196 804 ---RED----------LEEARETLEEAIEEIDRETRE 827
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
353-687 |
4.31e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.83 E-value: 4.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 353 QFYQERLEQLEGKLLIYESSGETQARHLAQRLQRELQLEKDLKELADRVELLIEQNAQLEEAKCEFEEAENDTRLHLQRN 432
Cdd:TIGR02168 743 EQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANL 822
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 433 EVELEILRQRnvelefgKEALGAKYQDCRAEVLILREDLAAAETQLEHLQAERKQARKELQDLRRSLPLLLIFRLLSLAK 512
Cdd:TIGR02168 823 RERLESLERR-------IAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSE 895
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 513 MgneesspggsprlssgytssihqdRDFSAKIQTTEFDLGQAgftdsgeEREIVYLKEEVKSLRSQLKELNARHYEAMET 592
Cdd:TIGR02168 896 L------------------------EELSEELRELESKRSEL-------RRELEELREKLAQLELRLEGLEVRIDNLQER 944
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 593 ADSHWVDLEQQYKEREEAQQAKEASLKQKIAQLQDCLREDSRAATEKIQQLEEgelsLKSCLVRMTKEHRDlLTENRTlq 672
Cdd:TIGR02168 945 LSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEE----LKERYDFLTAQKED-LTEAKE-- 1017
|
330
....*....|....*
gi 78706710 673 cSLESLMAKMEKEAE 687
Cdd:TIGR02168 1018 -TLEEAIEEIDREAR 1031
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
352-631 |
5.06e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.44 E-value: 5.06e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 352 LQFYQERLEQLEGKLLIYESsgETQARHLAQRLQRELQLEKDLKELADRVELLIEQNAQLEEAKCEFEEAEND--TRLH- 428
Cdd:TIGR02168 215 YKELKAELRELELALLVLRL--EELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEElqKELYa 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 429 ----LQRNEVELEILRQRNVELEFGKEALGAKYQDCRAEVLILREDLAAAETQLEHLQAERKQARKELQDLRRSLPLLLI 504
Cdd:TIGR02168 293 laneISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELES 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 505 FRLLSLAKMGneesspggspRLSSGYTSSIHQDRDFSAKIQTTEFDLGQAG-----FTDSGEEREIVYLKEEVKSLRSQL 579
Cdd:TIGR02168 373 RLEELEEQLE----------TLRSKVAQLELQIASLNNEIERLEARLERLEdrrerLQQEIEELLKKLEEAELKELQAEL 442
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 78706710 580 KELNARHYEAMETADSHWVDLEQQYKEREEAQQA------KEASLKQKIAQLQDCLRE 631
Cdd:TIGR02168 443 EELEEELEELQEELERLEEALEELREELEEAEQAldaaerELAQLQARLDSLERLQEN 500
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
351-498 |
1.19e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 49.28 E-value: 1.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 351 HLQFYQERLEQLEGKLLIYEssgetqarhlAQRLQRELQLEKDLKELADRVELLIEQNAQLEEAKCEFEEAENdtrlhlq 430
Cdd:TIGR02168 303 QKQILRERLANLERQLEELE----------AQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEA------- 365
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 78706710 431 rnevELEILRQRNVELEFGKEALGAKYQDCRAEVLILREDLAAAETQLEHLQAERKQARKELQDLRRS 498
Cdd:TIGR02168 366 ----ELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKK 429
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
408-785 |
1.72e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.90 E-value: 1.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 408 NAQLEEAKCEFEEAENDTRLHLQRNEVELEILRQRnvelefgkEALgAKYQDCRAEVlilredlaaaETQLEHLQAERKQ 487
Cdd:TIGR02168 151 EAKPEERRAIFEEAAGISKYKERRKETERKLERTR--------ENL-DRLEDILNEL----------ERQLKSLERQAEK 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 488 ArKELQDLRRSLPLLLIFRLLSLAKMGNEESSpggspRLSSGYTSSIHQDRDFSAKIQTTEFDLGQAGFTDSGEEREIVY 567
Cdd:TIGR02168 212 A-ERYKELKAELRELELALLVLRLEELREELE-----ELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEE 285
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 568 LKEEVKSLRSQLKELNAR---HYEAMETADSHWVDLE---QQYKEREEAQQAKEASLKQKIAQLQDCLREDSRAATEKIQ 641
Cdd:TIGR02168 286 LQKELYALANEISRLEQQkqiLRERLANLERQLEELEaqlEELESKLDELAEELAELEEKLEELKEELESLEAELEELEA 365
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 642 QLEEGELSLKSClvrmTKEHRDLLTENRTLQCSLESLMAKMEKEAEHKMPLTEALENERRKTQALMDDLIFAKKvqqnte 721
Cdd:TIGR02168 366 ELEELESRLEEL----EEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAEL------ 435
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 78706710 722 DQLRQETDALRTQIFNIKKDYLHIEVTNGELKEEVGTLENKIRQMENQMRDSEERARCLEDELR 785
Cdd:TIGR02168 436 KELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQE 499
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
562-798 |
3.93e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 47.62 E-value: 3.93e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 562 EREIVYLKEEVKSLRSQLKELNARhyeaMETADSHWVDLEQQYKERE---EAQQAKEASLKQKIAQLQ---DCLREDSRA 635
Cdd:COG1196 238 EAELEELEAELEELEAELEELEAE----LAELEAELEELRLELEELElelEEAQAEEYELLAELARLEqdiARLEERRRE 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 636 ATEKIQQLEEGELSLKSCLVRMTKEHRDLLTENRTLQCSLESLMAKMEKEAEhkmpLTEALENERRKTQALMDDLIFAKK 715
Cdd:COG1196 314 LEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEE----ALLEAEAELAEAEEELEELAEELL 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 716 VQQNTEDQLRQETDALRTQIFNIKKDYLHIEVTNGELKEEVGTLENKIRQMENQMRDSEERARCLEDELRTKDEQCQLLE 795
Cdd:COG1196 390 EALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELL 469
|
...
gi 78706710 796 RKL 798
Cdd:COG1196 470 EEA 472
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
356-798 |
4.44e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 47.34 E-value: 4.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 356 QERLEQLEGKLliyessGETQARHLAQRLQRELQLEKDLKELADRVELLIEQNAQLEEAKCEFEEAENDTRLHLQRNEVE 435
Cdd:PRK02224 186 RGSLDQLKAQI------EEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAE 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 436 LEILRQRNVELEFGKEALGAKYQDCRAEVLILREDL--AAAETQLEHLQAERKQARKELQDLRRSLPLLLIFRLLSLAKM 513
Cdd:PRK02224 260 IEDLRETIAETEREREELAEEVRDLRERLEELEEERddLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQA 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 514 GNEEsspggsprlSSGYTSSIHQDRDFSAKIQTTEFDLgqagftdsgeEREIVYLKEEVKSLRSQLKELNARHYEAMETA 593
Cdd:PRK02224 340 HNEE---------AESLREDADDLEERAEELREEAAEL----------ESELEEAREAVEDRREEIEELEEEIEELRERF 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 594 DSHWVDLEQQYKEREEAQQAKEAsLKQKIAQLQDCLREDSRAATEKIQQLEEGEL-----SLK-SCLVRMTKEHRDLLTE 667
Cdd:PRK02224 401 GDAPVDLGNAEDFLEELREERDE-LREREAELEATLRTARERVEEAEALLEAGKCpecgqPVEgSPHVETIEEDRERVEE 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 668 NRTLQCSLESLMAKMEKEAEHKMPLTEA------LENERRKTQALMDDLIFAKKVQQNTEDQLRQETDALRTQIFNIKKD 741
Cdd:PRK02224 480 LEAELEDLEEEVEEVEERLERAEDLVEAedrierLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREA 559
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 78706710 742 YLHIEVTNGELKEEVGTLENKiRQMENQMRDSEERARCLEDELRTKDEQCQLLERKL 798
Cdd:PRK02224 560 AAEAEEEAEEAREEVAELNSK-LAELKERIESLERIRTLLAAIADAEDEIERLREKR 615
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
374-497 |
5.93e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.83 E-value: 5.93e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 374 ETQARHLAQRLQrelQLEKDLKELADRVELLIEQNAQLEEAKcEFEEAENDT---RLHLQRNEVELEILRQRNVELefgk 450
Cdd:COG4913 616 EAELAELEEELA---EAEERLEALEAELDALQERREALQRLA-EYSWDEIDVasaEREIAELEAELERLDASSDDL---- 687
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 78706710 451 EALGAKYQDCRAEVLILREDLAAAETQLEHLQAERKQARKELQDLRR 497
Cdd:COG4913 688 AALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQD 734
|
|
| RecN |
COG0497 |
DNA repair ATPase RecN [Replication, recombination and repair]; |
370-495 |
6.48e-05 |
|
DNA repair ATPase RecN [Replication, recombination and repair];
Pssm-ID: 440263 [Multi-domain] Cd Length: 555 Bit Score: 46.61 E-value: 6.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 370 ESSGETQARHLAQRLQRELQLEKDLKELADRvellieqnaqLEEAKCEFEEAENDTRLHLQR---NEVELEILRQRNVEL 446
Cdd:COG0497 239 EGGALDLLGQALRALERLAEYDPSLAELAER----------LESALIELEEAASELRRYLDSlefDPERLEEVEERLALL 308
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 78706710 447 EfgkeALGAKYQDCRAEVLILREDLAA-------AETQLEHLQAERKQARKELQDL 495
Cdd:COG0497 309 R----RLARKYGVTVEELLAYAEELRAelaelenSDERLEELEAELAEAEAELLEA 360
|
|
| HlpA |
COG2825 |
Periplasmic chaperone for outer membrane proteins, Skp family [Cell wall/membrane/envelope ... |
127-202 |
1.42e-04 |
|
Periplasmic chaperone for outer membrane proteins, Skp family [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 442073 [Multi-domain] Cd Length: 171 Bit Score: 43.29 E-value: 1.42e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 78706710 127 KLQKEAEMYQKENERLQTEVQLMKQELDaAEKAAISRAKKQAQIGELMQRIKELEEMQSSLEDEASelREQNELLE 202
Cdd:COG2825 47 KLEKEFKKRQAELQKLEKELQALQEKLQ-KEAATLSEEERQKKERELQKKQQELQRKQQEAQQDLQ--KRQQELLQ 119
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
568-777 |
1.79e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.75 E-value: 1.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 568 LKEEVKSLRSQLKELNARHYEAMETADSHWVDLEQQyKEREEAQQAKEASLKQKIAQLQDCLREDSRAATEKIQQLEEGE 647
Cdd:COG4942 25 AEAELEQLQQEIAELEKELAALKKEEKALLKQLAAL-ERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 648 LSLKSCLVRMTKEHR-----------DLLTENRTLQcSLESLMAKMEKEAEHKMPLTEALENERRKTQALMDDLIFAKKV 716
Cdd:COG4942 104 EELAELLRALYRLGRqpplalllspeDFLDAVRRLQ-YLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAE 182
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 78706710 717 QQNTEDQLRQETDALRTQIFNIKKDYLHIEVTNGELKEEVGTLENKIRQMENQMRDSEERA 777
Cdd:COG4942 183 LEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
562-798 |
2.31e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.05 E-value: 2.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 562 EREIVYLKEEVKSLRSQLKELNARHYEAMETADSHWVDLEQQYKEREEAQQaKEASLKQKIAQLQDCLREDSRAATEKIQ 641
Cdd:TIGR02168 690 EEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEA-EVEQLEERIAQLSKELTELEAEIEELEE 768
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 642 QLEEGELSLKSCLVRMTKEHRDLLTENRTLQCSLESLMakmEKEAEHKmplteALENERRKTQALMDDLIFAKKVQQNTE 721
Cdd:TIGR02168 769 RLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALD---ELRAELT-----LLNEEAANLRERLESLERRIAATERRL 840
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 78706710 722 DQLRQETDALRTQIFNIKKDYLHIEVTNGELKEEVGTLENKIRQMENQMRDSEERARCLEDELRTKDEQCQLLERKL 798
Cdd:TIGR02168 841 EDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRREL 917
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
376-586 |
3.52e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.52 E-value: 3.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 376 QARHLAQRLQRELQLEKDLKELADRVELLIEQNAQLEEAKcefeeaendTRLHLQRNEVELEILRQRNVELEFGKEALGA 455
Cdd:COG4913 239 RAHEALEDAREQIELLEPIRELAERYAAARERLAELEYLR---------AALRLWFAQRRLELLEAELEELRAELARLEA 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 456 KYQDCRAEVLILREDLAAAETQ--------LEHLQAERKQARKELQDLRRSLPLLLIFRLLSLAKMGNEEsspggsprls 527
Cdd:COG4913 310 ELERLEARLDALREELDELEAQirgnggdrLEQLEREIERLERELEERERRRARLEALLAALGLPLPASA---------- 379
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 78706710 528 SGYTSSIHQDRDFSAKIQTTEFDLGQAGFTDSGEEREivyLKEEVKSLRSQLKELNARH 586
Cdd:COG4913 380 EEFAALRAEAAALLEALEEELEALEEALAEAEAALRD---LRRELRELEAEIASLERRK 435
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
123-778 |
3.59e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 44.28 E-value: 3.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 123 QDLDKLQKEAEMYQKENERLQTEVQLMKQELDAAEKaaiSRAKKQAQIGELMQRIKELEEMQSSLEDEASELREQNELLE 202
Cdd:TIGR02168 295 NEISRLEQQKQILRERLANLERQLEELEAQLEELES---KLDELAEELAELEEKLEELKEELESLEAELEELEAELEELE 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 203 FRILELEDDSDKMES----------TCEGHCQSLQDLLEQSAQRLEDRDKRCLQQLLQCVQQLDLDTMMPGDQNRTETPK 272
Cdd:TIGR02168 372 SRLEELEEQLETLRSkvaqlelqiaSLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEE 451
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 273 RHNSTHSHSHSHSHSQSHNHRIVATVQPYSNCAtptapptpsKRHCNQVSSWQSSSLSESGVFVECDLLSNPNPIGHPHL 352
Cdd:TIGR02168 452 LQEELERLEEALEELREELEEAEQALDAAEREL---------AQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGIL 522
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 353 QFYQERLE-----------QLEGKLLIYESSGETQAR----HLAQ-RLQR----ELQLEKDLKELADRVELLIEQNAQLE 412
Cdd:TIGR02168 523 GVLSELISvdegyeaaieaALGGRLQAVVVENLNAAKkaiaFLKQnELGRvtflPLDSIKGTEIQGNDREILKNIEGFLG 602
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 413 EAKcEFEEAENDTRLHLQ----------RNEVELEILRQ-----RNVELE-----------FGKEALGAKYQDCRAEVLI 466
Cdd:TIGR02168 603 VAK-DLVKFDPKLRKALSyllggvlvvdDLDNALELAKKlrpgyRIVTLDgdlvrpggvitGGSAKTNSSILERRREIEE 681
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 467 LREDLAAAETQLEHLQAERKQARKELQDLRRSLPLLLIFRLLSLAKMGNEESspggsprlssgytssihQDRDFSAKIQT 546
Cdd:TIGR02168 682 LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRK-----------------DLARLEAEVEQ 744
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 547 TEFDLGQagftdsgEEREIVYLKEEVKSLRSQLKELNarhyEAMETADSHWVDLEQQYKEREEAQQAKEASLKQKIAQLQ 626
Cdd:TIGR02168 745 LEERIAQ-------LSKELTELEAEIEELEERLEEAE----EELAEAEAEIEELEAQIEQLKEELKALREALDELRAELT 813
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 627 DcLREDSRAATEKIQQLEEGELSLKSCLVRMTKEHRDL---LTENRTLQCSLESLMAKMEKEAEHkmplteaLENERRKT 703
Cdd:TIGR02168 814 L-LNEEAANLRERLESLERRIAATERRLEDLEEQIEELsedIESLAAEIEELEELIEELESELEA-------LLNERASL 885
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 78706710 704 QALMDDLIFAKKVQQNTEDQLRQETDALRTQIfnikkdylhievtnGELKEEVGTLENKIRQMENQMRDSEERAR 778
Cdd:TIGR02168 886 EEALALLRSELEELSEELRELESKRSELRREL--------------EELREKLAQLELRLEGLEVRIDNLQERLS 946
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
369-643 |
5.09e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.85 E-value: 5.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 369 YESSGETQARHLAQRLQR---ELQLEKDLKELADRVELLieqNAQLEEAKCEFEEAENdtrlhlqrnevELEILRQRNVE 445
Cdd:COG3206 142 YTSPDPELAAAVANALAEaylEQNLELRREEARKALEFL---EEQLPELRKELEEAEA-----------ALEEFRQKNGL 207
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 446 LEFGKEALgakyqdcraevlILREDLAAAETQLEHLQAERKQARKELQDLRRslplllifrllSLAKMGNEESSPGGSPR 525
Cdd:COG3206 208 VDLSEEAK------------LLLQQLSELESQLAEARAELAEAEARLAALRA-----------QLGSGPDALPELLQSPV 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 526 LSsgytssihqdrDFSAKIQTTEFDLGQAGFTDSGEEREIVYLKEEVKSLRSQLKELNARHYEAMETADSHWVDLEQQYK 605
Cdd:COG3206 265 IQ-----------QLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQ 333
|
250 260 270
....*....|....*....|....*....|....*...
gi 78706710 606 EREEAQQAKEASLKQKIAQLQDcLREDSRAATEKIQQL 643
Cdd:COG3206 334 AQLAQLEARLAELPELEAELRR-LEREVEVARELYESL 370
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
386-497 |
7.57e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 7.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 386 RELQLEKdlKELADRVELLIEQNAQLEEAKCEFEEAEN--DTRLHLQRNEVELEILRQRNVELEFGKEALGA-----KYQ 458
Cdd:COG4913 214 REYMLEE--PDTFEAADALVEHFDDLERAHEALEDAREqiELLEPIRELAERYAAARERLAELEYLRAALRLwfaqrRLE 291
|
90 100 110
....*....|....*....|....*....|....*....
gi 78706710 459 DCRAEVLILREDLAAAETQLEHLQAERKQARKELQDLRR 497
Cdd:COG4913 292 LLEAELEELRAELARLEAELERLEARLDALREELDELEA 330
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
377-495 |
9.20e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 9.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 377 ARHLAQRLQREL-QLEKDLKELADRVELLIEQNAQLEEAKC------EFEEAENDT---RLHLQRNEVELEILRQRNVE- 445
Cdd:COG4913 608 NRAKLAALEAELaELEEELAEAEERLEALEAELDALQERREalqrlaEYSWDEIDVasaEREIAELEAELERLDASSDDl 687
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 78706710 446 --LEFGKEALGAKYQDCRAEVLILREDLAAAETQLEHLQAERKQARKELQDL 495
Cdd:COG4913 688 aaLEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAA 739
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
351-797 |
1.01e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.83 E-value: 1.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 351 HLQFYQERLEQLEGKLLIYESSgETQARHLAQRLQRELQLEKDLKELAD---RVELLIEQNAQLEEAKCEFEEAENDtrl 427
Cdd:COG4717 89 EYAELQEELEELEEELEELEAE-LEELREELEKLEKLLQLLPLYQELEAleaELAELPERLEELEERLEELRELEEE--- 164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 428 hLQRNEVELEILRQR-NVELEFGKEALGAKYQDCRAEVLILREDLAAAETQLEHLQAERKQARKELQDLRRSLPLLLIFR 506
Cdd:COG4717 165 -LEELEAELAELQEElEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEE 243
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 507 LLSLAkmgneesspggspRLSSGYTSSIHQDRDFSAKIQTTEFDLGQAGFTDSGEEREIVYLKEEVKSLRSQLKELNARH 586
Cdd:COG4717 244 RLKEA-------------RLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQAL 310
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 587 YEAMETADSHWVDLEQQYKEREEAQQAKEASLKQKIAQLQDCLREDSRAATEKIQQLEEGELS--LKSCLVRMTKEHRDL 664
Cdd:COG4717 311 PALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAalLAEAGVEDEEELRAA 390
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 665 LTENRTLQcsleslmaKMEKEAEHkmpLTEALENERRKTQALMDDLifakkvqqnTEDQLRQETDALRTQIFNIKKDYlh 744
Cdd:COG4717 391 LEQAEEYQ--------ELKEELEE---LEEQLEELLGELEELLEAL---------DEEELEEELEELEEELEELEEEL-- 448
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 78706710 745 ievtnGELKEEVGTLENKIRQMENQMRDSEerarcLEDELRTKDEQCQLLERK 797
Cdd:COG4717 449 -----EELREELAELEAELEQLEEDGELAE-----LLQELEELKAELRELAEE 491
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
541-745 |
1.24e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.59 E-value: 1.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 541 SAKIQTTEFDLGQAGFTDSGEEREIVYLKEEVKSLRSQLKELNARHYEAMETADSHWVDLEQQYKEREEAQQAKEASLKQ 620
Cdd:COG4913 266 AARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLER 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 621 KIAQLQDCLREDSRAATEKIQQLEEGELSLksclvrmtKEHRDLLTENRtlqcsleslmakmeKEAEHkmpLTEALENER 700
Cdd:COG4913 346 EIERLERELEERERRRARLEALLAALGLPL--------PASAEEFAALR--------------AEAAA---LLEALEEEL 400
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 78706710 701 RKTQALMDDLIFAKKVQQNTEDQLRQETDALRTQIFNIKKDYLHI 745
Cdd:COG4913 401 EALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLAL 445
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
599-798 |
1.25e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 1.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 599 DLEQQYKEREEAQQAKEASLKQKIAQLQDcLREDSRAATEKIQQLEEGELSLKSCLVRMTKEHRDLLTENRTLQCSLESL 678
Cdd:COG4942 31 QLQQEIAELEKELAALKKEEKALLKQLAA-LERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAEL 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 679 MAKMEKEAEHkmPLTEALENERRKTQALMDDLIFAKKVQQNTE--DQLRQETDALRTQIFNIKKDYLHIEVTNGELKEEV 756
Cdd:COG4942 110 LRALYRLGRQ--PPLALLLSPEDFLDAVRRLQYLKYLAPARREqaEELRADLAELAALRAELEAERAELEALLAELEEER 187
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 78706710 757 GTLENKIRQMENQMRDSEERARCLEDELRTKDEQCQLLERKL 798
Cdd:COG4942 188 AALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALI 229
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
130-202 |
1.70e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 42.12 E-value: 1.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 130 KEAEMYQKENERLQTEVQLMKQELDAAEKAAISRAKKQAQI------GELMQRIKELEEMQSS---------LEDEASEL 194
Cdd:PRK00409 537 EEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQaikeakKEADEIIKELRQLQKGgyasvkaheLIEARKRL 616
|
....*...
gi 78706710 195 REQNELLE 202
Cdd:PRK00409 617 NKANEKKE 624
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
123-244 |
2.50e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.82 E-value: 2.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 123 QDLDKLQKEAEMYQKENERLQTEVQLMKQELDAAEKAA------ISRAKKQAQIGELMQRIKELEEMQS---SLEDEASE 193
Cdd:COG4913 617 AELAELEEELAEAEERLEALEAELDALQERREALQRLAeyswdeIDVASAEREIAELEAELERLDASSDdlaALEEQLEE 696
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 78706710 194 LREQNELLEFRILELEDDsdkmESTCEGHCQSLQDLLEQSAQRLEDRDKRC 244
Cdd:COG4913 697 LEAELEELEEELDELKGE----IGRLEKELEQAEEELDELQDRLEAAEDLA 743
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
603-843 |
2.59e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.59 E-value: 2.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 603 QYKEREEAQQAKEASLKQKIAQLQDCLREDSRAATEKIQQLEEGELSLksclVRMTKEHRDLLTENRTLQCSLESLMAKM 682
Cdd:TIGR02169 671 SEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKI----GEIEKEIEQLEQEEEKLKERLEELEEDL 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 683 EKeaehkmpLTEALENERRKTQALMDDLifakkvqqnteDQLRQETDALRTQIFNIKKDYLHIEVTN-----GELKEEVG 757
Cdd:TIGR02169 747 SS-------LEQEIENVKSELKELEARI-----------EELEEDLHKLEEALNDLEARLSHSRIPEiqaelSKLEEEVS 808
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 758 TLENKIRQMENQMRDSEERARCLEDELRTKDEQCQLLERKLGvmpegySLADELHDSPAKRAKKD-EVPSLQAASQGLGV 836
Cdd:TIGR02169 809 RIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIK------SIEKEIENLNGKKEELEeELEELEAALRDLES 882
|
....*..
gi 78706710 837 ALLDLEG 843
Cdd:TIGR02169 883 RLGDLKK 889
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
352-734 |
3.30e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 41.26 E-value: 3.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 352 LQFYQERLEQLEGKLLIYESSGETQARHLAQRLQRELQLEKDLKELADRVELLIEQNAQLEEAKCEFEEAENDTRLHLQr 431
Cdd:pfam15921 453 IQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQ- 531
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 432 nevELEILRQ-----RNVELEFgkEALGAKYQDCRAEVLILREDLAAAeTQL--EH------LQAERKQARKELQDLRRS 498
Cdd:pfam15921 532 ---ELQHLKNegdhlRNVQTEC--EALKLQMAEKDKVIEILRQQIENM-TQLvgQHgrtagaMQVEKAQLEKEINDRRLE 605
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 499 LPLLLIFRLLSLAKMGNEESS------------PGGSPRLSSgyTSSIHQDRD-FSAKIQTT---------EFDLGQAGF 556
Cdd:pfam15921 606 LQEFKILKDKKDAKIRELEARvsdlelekvklvNAGSERLRA--VKDIKQERDqLLNEVKTSrnelnslseDYEVLKRNF 683
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 557 TDSGEEREIVY--LKEEVKSLRSQLkELNARHYEAMETADSHWVDLEQQYKEREEAQQAKEASLKQKIAQLQDCLredSR 634
Cdd:pfam15921 684 RNKSEEMETTTnkLKMQLKSAQSEL-EQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAM---TN 759
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 635 AATEKIQQLEEGElslksclvRMTKEHRDLLTENRTLQCSLESLMAKMEKEAEHKMPLTEALENERRKTQALMDdlIFAK 714
Cdd:pfam15921 760 ANKEKHFLKEEKN--------KLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQD--IIQR 829
|
410 420
....*....|....*....|
gi 78706710 715 KVQQNTEDQLRQETDALRTQ 734
Cdd:pfam15921 830 QEQESVRLKLQHTLDVKELQ 849
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
356-703 |
3.60e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.21 E-value: 3.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 356 QERLEQLEGKLLIYESSGETQARHLAQRLQRELQLEKDLKELADRVELLIEQNAQLEEAKCEFEEAENDTRLHLQRNEVe 435
Cdd:TIGR02169 715 SRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRI- 793
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 436 leilrqrnvelefgkEALGAKYQDCRAEVLILREDLAAAETQLEHLQAERKQARKELQDLRRSLPLLLIFRLLSLAKMGN 515
Cdd:TIGR02169 794 ---------------PEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIEN 858
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 516 eesspggsprlssgytsSIHQDRDFSAKIQTTEFDLGQAgftdsgeEREIVYLKEEVKSLRSQLKELNARHYEAMETADs 595
Cdd:TIGR02169 859 -----------------LNGKKEELEEELEELEAALRDL-------ESRLGDLKKERDELEAQLRELERKIEELEAQIE- 913
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 596 hwvdleqQYKEREEAQQAKEASLKQKIAQLQDCLREDS---------RAATEKIQQLEEGELSLKSCLVRMTKEHRDllT 666
Cdd:TIGR02169 914 -------KKRKRLSELKAKLEALEEELSEIEDPKGEDEeipeeelslEDVQAELQRVEEEIRALEPVNMLAIQEYEE--V 984
|
330 340 350
....*....|....*....|....*....|....*..
gi 78706710 667 ENRtlQCSLESLMAKMEKEAEHKMPLTEALENERRKT 703
Cdd:TIGR02169 985 LKR--LDELKEKRAKLEEERKAILERIEEYEKKKREV 1019
|
|
| OmpH |
smart00935 |
Outer membrane protein (OmpH-like); This family includes outer membrane proteins such as OmpH ... |
127-202 |
3.74e-03 |
|
Outer membrane protein (OmpH-like); This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery.
Pssm-ID: 214922 [Multi-domain] Cd Length: 140 Bit Score: 38.72 E-value: 3.74e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 78706710 127 KLQKEAEMYQKENERLQTEVQLMKQELDaAEKAAISRAKKQAQIGELMQRIKELEEMQSSLEDEASelREQNELLE 202
Cdd:smart00935 22 QLEKEFKKRQAELEKLEKELQKLKEKLQ-KDAATLSEAAREKKEKELQKKVQEFQRKQQKLQQDLQ--KRQQEELQ 94
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
351-497 |
3.89e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.05 E-value: 3.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 351 HLQFYQERLEQLEGKLliyessgeTQARHLAQRLQREL-QLEKDLKELADRVELLIEQ-----NAQLEEAKCEFEEAEND 424
Cdd:COG4913 282 RLWFAQRRLELLEAEL--------EELRAELARLEAELeRLEARLDALREELDELEAQirgngGDRLEQLEREIERLERE 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 425 TRLHLQRNEVELEILRQRNVELEFGKEALGAKYQDCRAEVL-------ILREDLAAAETQLEHLQAERKQARKELQDLRR 497
Cdd:COG4913 354 LEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEaleeeleALEEALAEAEAALRDLRRELRELEAEIASLER 433
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
356-634 |
4.97e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.82 E-value: 4.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 356 QERLEQLEGKLLIYE-SSGETQARHLAQRLQR-ELQLEKDLKELADRVELLIEQNAQLEEAKCEFEEAENDTRLHLQRN- 432
Cdd:TIGR02169 217 LKEKREYEGYELLKEkEALERQKEAIERQLASlEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKi 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 433 -EVELEILRQRNVELEFGKEALGAKYQDCRAEVLI--LREDLAAAETQLEHLQAERKQARKELQDLRrslplllIFRLLS 509
Cdd:TIGR02169 297 gELEAEIASLERSIAEKERELEDAEERLAKLEAEIdkLLAEIEELEREIEEERKRRDKLTEEYAELK-------EELEDL 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 510 LAKMGNEESSPGGSPRLSSGYTSSIHQDRDFSAKIQTTEFDLGQAGFTDSGEEREIvylKEEVKSLRSQLKELNARHYEA 589
Cdd:TIGR02169 370 RAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADL---NAAIAGIEAKINELEEEKEDK 446
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 78706710 590 METADSHWVDLEQQYKEREEAQQAKEAsLKQKIAQLQDCLREDSR 634
Cdd:TIGR02169 447 ALEIKKQEWKLEQLAADLSKYEQELYD-LKEEYDRVEKELSKLQR 490
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
382-704 |
5.94e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.44 E-value: 5.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 382 QRLQRELQlEKDLKELADRVELLIEQNAQLEEAKCEFEEaendtrlHLQRNEVELEILRQRNVELEFGKEALGAKYQD-C 460
Cdd:TIGR02169 214 QALLKEKR-EYEGYELLKEKEALERQKEAIERQLASLEE-------ELEKLTEEISELEKRLEEIEQLLEELNKKIKDlG 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 461 RAEVLILREDLAAAETQLEHLQAERKQARKELQDLRRSLPLLLIFRLLSLAKMgneesspggsprlssgytssihqdRDF 540
Cdd:TIGR02169 286 EEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEI------------------------EEL 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 541 SAKIQTtefdlgQAGFTDSGEErEIVYLKEEVKSLRSQLKELNARHYEametadshWVDLEQQYKEREEAQQAKEASLKQ 620
Cdd:TIGR02169 342 EREIEE------ERKRRDKLTE-EYAELKEELEDLRAELEEVDKEFAE--------TRDELKDYREKLEKLKREINELKR 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 621 KIAQLQDCLREdsraATEKIQQLEEGELSLKSCLVRMTKEHRDLLTENRTLQCSLESLMAKMEKEAEHKMPLTE---ALE 697
Cdd:TIGR02169 407 ELDRLQEELQR----LSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEeydRVE 482
|
....*..
gi 78706710 698 NERRKTQ 704
Cdd:TIGR02169 483 KELSKLQ 489
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
564-797 |
6.26e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 40.43 E-value: 6.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 564 EIVYLKEEVKSLRSQLKELNARHYEA---METADSHWVDLEQQYKEREEAQQAKEASLKQKIAQLQDClredsraaTEKI 640
Cdd:TIGR02168 233 RLEELREELEELQEELKEAEEELEELtaeLQELEEKLEELRLEVSELEEEIEELQKELYALANEISRL--------EQQK 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 641 QQLEEGELSLKSCLVRMTKEhrdLLTENRTLQCSLESLmAKMEKEAEHKMPLTEALENERRKTQALMDDLifakkvqQNT 720
Cdd:TIGR02168 305 QILRERLANLERQLEELEAQ---LEELESKLDELAEEL-AELEEKLEELKEELESLEAELEELEAELEEL-------ESR 373
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 78706710 721 EDQLRQETDALRTQIFnikkdylhievtngELKEEVGTLENKIRQMENQMRDSEERARCLEDELRTKDEQCQLLERK 797
Cdd:TIGR02168 374 LEELEEQLETLRSKVA--------------QLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELK 436
|
|
| FtsB |
COG2919 |
Cell division protein FtsB [Cell cycle control, cell division, chromosome partitioning]; |
118-160 |
6.33e-03 |
|
Cell division protein FtsB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442163 [Multi-domain] Cd Length: 96 Bit Score: 36.78 E-value: 6.33e-03
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 78706710 118 IWQTLQDLDKLQKEAEMYQKENERLQTEVQLMKQELDAAEKAA 160
Cdd:COG2919 31 YRELRQEIAELEAENAKLKARNAELEAEVADLKDGPDYIEERA 73
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
352-495 |
7.36e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.00 E-value: 7.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 352 LQFYQERLEQLEGKLLIYES------------SGETQARHLAQRL----QRELQLEKDLKELADRVELLIEQNAQLEEAK 415
Cdd:COG3206 177 LEFLEEQLPELRKELEEAEAaleefrqknglvDLSEEAKLLLQQLseleSQLAEARAELAEAEARLAALRAQLGSGPDAL 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 416 CEFEEAENDTRLHLQRNEVELEI--LRQRN-------VELEFGKEALGAKYQDCRAEVLI-LREDLAAAETQLEHLQAER 485
Cdd:COG3206 257 PELLQSPVIQQLRAQLAELEAELaeLSARYtpnhpdvIALRAQIAALRAQLQQEAQRILAsLEAELEALQAREASLQAQL 336
|
170
....*....|
gi 78706710 486 KQARKELQDL 495
Cdd:COG3206 337 AQLEARLAEL 346
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
120-238 |
9.01e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 40.04 E-value: 9.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78706710 120 QTLQDLDKLQKEAEMYQKENERLQtevQLMKQELDAAEKAAISRAKKQAQIGELMQRIKELEEMQSSLEDEASELREQNE 199
Cdd:TIGR02168 821 NLRERLESLERRIAATERRLEDLE---EQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELE 897
|
90 100 110
....*....|....*....|....*....|....*....
gi 78706710 200 LLEFRILELEDDSDKMestcEGHCQSLQDLLEQSAQRLE 238
Cdd:TIGR02168 898 ELSEELRELESKRSEL----RRELEELREKLAQLELRLE 932
|
|
| |
