|
Name |
Accession |
Description |
Interval |
E-value |
| BicD |
pfam09730 |
Microtubule-associated protein Bicaudal-D; BicD proteins consist of three coiled-coiled ... |
83-797 |
0e+00 |
|
Microtubule-associated protein Bicaudal-D; BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER). For full functioning they bind with GSK-3beta pfam05350 to maintain the anchoring of microtubules to the centromere. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells.
Pssm-ID: 462863 [Multi-domain] Cd Length: 717 Bit Score: 1050.99 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 83 GQAHTNHKKVAADGESREESLIQESASKEQYYVRKVLELQTELKQLRNVLINTQSENERLTSVAQELKEINQNVEIQRGR 162
Cdd:pfam09730 1 GQSVSSHKKVAADGESREESLLQESASKEAYYAQRILELQNELKQARAVLSNTQAENERLASLSQELKEECECVELQRGR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 163 LRDDIKEYKFREARLLQDYSELEEENISLQKQVSVLRQNQVEFEGLKHEIKRLEEETEYLNSQLEDAIRLKEISERQLEE 242
Cdd:pfam09730 81 MRDEIKEYKVREARLLQDYSELEEENISLQKQVSVLKQNQVEFEGLKHEITRKEEETELLNSQLEEAIRLREIAERQLDE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 243 ALETLKTEREQKNNLRKELSHYMSINDSFYTSHLQVSLDGLKFSDD-AVTAEPNNDAEALvNGFEHS--GLVKASLDNKT 319
Cdd:pfam09730 161 ALETLKTEREQKNSLRKELSHYMTLNDFDYVSHLSISLDGLKFSEDeGAGTEPNNDGEAM-DGGENGggGLKNSGLDNRT 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 320 STPRKDGLAPPSPSLVSDLLSELHISEIQKLKQQLVQMEREKVGLLATLQDTQKQLEQARGTLSEQHEKVSRLTENLSAL 399
Cdd:pfam09730 240 STPRKSEVFPPAPSLVSDLLSELNISEIQKLKQQLIQVEREKVSLLSTLQESQKQLEQAKGALSEQQEKVNRLTENLEAM 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 400 RRLQAGKERQTSLDNEKDRDSHEDGDYYEVDINGPEILSCKYHVAVAEAGELREQLKALHSTHEAREAQLAEEKGRYEAE 479
Cdd:pfam09730 320 RGLQASKERQDALDSEKDRDSHEDGDYYEVDINGPEILECKYRVAVEEAGELREELKALKARYNTLEERYKEEKTRWEAE 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 480 VQALTEKVSLLEKASHQDQELLAQLEKELRKVSDVAGETQGSLNVAQDELVTFSEELANLYHHVCMCNNETPNRVMLDYY 559
Cdd:pfam09730 400 AQDLAEKIRQLEKASHQDQERIAHLEKELGKTRKVAGESEGSLSVAQDELVTFSEELANLYHHVCMCNNETPNRVMLDYY 479
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 560 REGQGK-AGRTSPEGRGRRSPVLLPKGLLSTEIGRADGGtGDNSPSPSSSLPSPLSDPRREPMNIYNLIAIIRDQIKHLQ 638
Cdd:pfam09730 480 REGAGArARKSHQEPRGLRSPRLLTRGLFMGEVGTADTT-SNSPSPCSSCPGSPTSDFRREPMNIYNLVAIIRDQIKHLQ 558
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 639 AAVDRTTELSRQRIASQELGPAVDKDKEALMEEILKLKSLLSTKREQITTLRTVLKANKQTAEVALANLKSKYENEKAMV 718
Cdd:pfam09730 559 VAVDRTTELSRQRGAALELSTESDKDKEALMEEILKLKSLLSTKREQIATLRTVLKANKQTAEVALANLKSKYENEKAMV 638
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 76008363 719 TETMMKLRNELKALKEDAATFSSLRAMFATRCDEYITQLDEMQRQLAAAEDEKKTLNSLLRMAIQQKLALTQRLELLEL 797
Cdd:pfam09730 639 TETMMKLRNELKALKEDAATFSSLRAMFATRCDEYVTQLDEMQRQLAAAEDEKKTLNSLLRMAIQQKLALTQRLEDLEF 717
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
5-510 |
1.26e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.89 E-value: 1.26e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 5 SEEEEYARLVMEAQPEWLRAEVKRLSHELAETTREKIQAAEyglavleEKHQLKLQFEELEVDYEAIRSEMEQLKEAFGQ 84
Cdd:COG1196 220 EELKELEAELLLLKLRELEAELEELEAELEELEAELEELEA-------ELAELEAELEELRLELEELELELEEAQAEEYE 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 85 AHTNHKKVAADGESREESLIQESASKEqyyvrkvlELQTELKQLRNVLINTQSE----NERLTSVAQELKEINQNVEIQR 160
Cdd:COG1196 293 LLAELARLEQDIARLEERRRELEERLE--------ELEEELAELEEELEELEEEleelEEELEEAEEELEEAEAELAEAE 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 161 GRLRDDIKEYKFREARLLQDYSELEEENISLQKQVSVLRQNQVEFEGLKHEIKRLEEETEYLNSQLEDAIRLKEISERQL 240
Cdd:COG1196 365 EALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEAL 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 241 EEALETLKTEREQKNNLRKELShymSINDSFYTSHLQVSLDGLKFSDDAVTAEPNNDAEALVNGFEHSGLVKASLDNKTS 320
Cdd:COG1196 445 EEAAEEEAELEEEEEALLELLA---ELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRG 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 321 TPRKDGLAPPSPSLVSDLLSELhiseiqkLKQQLVQMEREKVGLLATLQDTQKQLEQARGT-LSEQHEKVSRLTENLSAL 399
Cdd:COG1196 522 LAGAVAVLIGVEAAYEAALEAA-------LAAALQNIVVEDDEVAAAAIEYLKAAKAGRATfLPLDKIRARAALAAALAR 594
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 400 RRLQAGKERQTSLDNEKDRDSHEDGDYYEVDINGPEILSCKYHVAVAEAGELREQLKALHSTHEAREAQLAEEKGRYEAE 479
Cdd:COG1196 595 GAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAAL 674
|
490 500 510
....*....|....*....|....*....|.
gi 76008363 480 VQALTEKVSLLEKASHQDQELLAQLEKELRK 510
Cdd:COG1196 675 LEAEAELEELAERLAEEELELEEALLAEEEE 705
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
23-262 |
1.36e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.46 E-value: 1.36e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 23 RAEVKRLSHELAETTrEKIQAAEYGLAVLEEKHQ-LKLQFEELEVDYEAIRSEMEQLKEAFGQAHTNHKKVAADGEsREE 101
Cdd:TIGR02168 676 RREIEELEEKIEELE-EKIAELEKALAELRKELEeLEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIA-QLS 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 102 SLIQESASKEQYYVRKVLELQTELKQLRNVLINTQSENERLTSVAQELKEINQNVEIQRGRLRDDIKEYKFREARLLQDY 181
Cdd:TIGR02168 754 KELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRI 833
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 182 SELEEENISLQKQvsvLRQNQVEFEGLKHEIKRLEEETEYLNSQLEDAIRLKEISERQLEEALETLKTEREQKNNLRKEL 261
Cdd:TIGR02168 834 AATERRLEDLEEQ---IEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKR 910
|
.
gi 76008363 262 S 262
Cdd:TIGR02168 911 S 911
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
6-264 |
1.45e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.00 E-value: 1.45e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 6 EEEEYARLVMEAQPEWLRAEVKRLSHELAETTREkIQAAEYGLAVLEEKH-QLKLQFEELEVDYEAIRSEMEQLK----- 79
Cdd:TIGR02168 221 ELRELELALLVLRLEELREELEELQEELKEAEEE-LEELTAELQELEEKLeELRLEVSELEEEIEELQKELYALAneisr 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 80 -EAFGQAHTNHKKVAADGESREESLIQESASKEQYYVRKVLELQTELKQLRNVLINTQSENERLTSVAQELKEINQNVEI 158
Cdd:TIGR02168 300 lEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEE 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 159 QRGRLRDDIKEYKFREARLLQDYSELEEENISLQKQVSVLRQNQ--VEFEGLKHEIKRLEEETEYLNSQLEDAIRLKEIS 236
Cdd:TIGR02168 380 QLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIeeLLKKLEEAELKELQAELEELEEELEELQEELERL 459
|
250 260
....*....|....*....|....*...
gi 76008363 237 ERQLEEALETLKTEREQKNNLRKELSHY 264
Cdd:TIGR02168 460 EEALEELREELEEAEQALDAAERELAQL 487
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
38-261 |
2.96e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 57.64 E-value: 2.96e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 38 REKIQAAEYgLAVLEEKHQLK-----LQFEELEVDYEAIRSEMEQLKEAFGQAHTNHKKVAADGESREESLIQESASKEq 112
Cdd:COG1196 207 RQAEKAERY-RELKEELKELEaelllLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELE- 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 113 yyvrkvlELQTELKQLRNVLINTQSENERLTSVAQELKEINQNVEIQRGRLRDDIKEYKFREARLLQDYSELEEENISLQ 192
Cdd:COG1196 285 -------EAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAE 357
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 76008363 193 KQVSVLRQNQVEFEGLKHEIKRLEEETEYLNSQLEDAIRLKEISERQLEEALETLKTEREQKNNLRKEL 261
Cdd:COG1196 358 AELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEEL 426
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
6-539 |
7.63e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.48 E-value: 7.63e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 6 EEEEYARLVMEAQPEWLRAEVKRLSHELAET------TREKIQAAEYGLAVLEEK-HQLKLQFEELEVDYEAIRSEMEQL 78
Cdd:COG1196 256 EELEAELAELEAELEELRLELEELELELEEAqaeeyeLLAELARLEQDIARLEERrRELEERLEELEEELAELEEELEEL 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 79 KEAFGQAHTNHKKVAADGESREESLIQESASKEQyYVRKVLELQTELKQLRNVLINTQSENERLTSVAQELKEINQNVEI 158
Cdd:COG1196 336 EEELEELEEELEEAEEELEEAEAELAEAEEALLE-AEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLE 414
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 159 QRGRLRDDIKEykfREARLLQDYSELEEENISLQKQVSVLRQNQVEFEGLKHEIKRLEEETEYLNSQLEDAiRLKEISER 238
Cdd:COG1196 415 RLERLEEELEE---LEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAEL-LEELAEAA 490
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 239 QLEEALETLKTEREQKNNLRKELSHyMSINDSFYTSHLQVSLDGLKFSDDAVTA----------EPNNDAEALVNGFEHS 308
Cdd:COG1196 491 ARLLLLLEAEADYEGFLEGVKAALL-LAGLRGLAGAVAVLIGVEAAYEAALEAAlaaalqnivvEDDEVAAAAIEYLKAA 569
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 309 GLVKASLDNKTSTPRKDGLAPPSPSLVSDLLSELHISEIQKLKQQLVQMEREKVGLLATLQDTQKQLEQARGTLSEQHEK 388
Cdd:COG1196 570 KAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREV 649
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 389 VSRLTENLSALRRLQAGKERQTSLDNEKDRDSHEdgdyyevdingpeilsckyhvAVAEAGELREQLKALHSTHEAREAQ 468
Cdd:COG1196 650 TLEGEGGSAGGSLTGGSRRELLAALLEAEAELEE---------------------LAERLAEEELELEEALLAEEEEERE 708
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 76008363 469 LAEEKGRYEAEVQALTEKVSLLEKASHQDQELLAQLEKELRKVSDVAGETQGSLNVAQDELVTFSEELANL 539
Cdd:COG1196 709 LAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
5-264 |
1.97e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.07 E-value: 1.97e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 5 SEEEEYARLVMEAQPEWLRAEVKRLSHELaETTREKIQAAEYGLAVLE-EKHQLKLQFEELEVDYEAIRSEMEQLKeafg 83
Cdd:TIGR02169 204 RREREKAERYQALLKEKREYEGYELLKEK-EALERQKEAIERQLASLEeELEKLTEEISELEKRLEEIEQLLEELN---- 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 84 qahtnhKKVAADGESREESL---IQESASKEQYYVRKVLELQTELKQLRNVLINTQSENERLTSVAQELKEinqNVEIQR 160
Cdd:TIGR02169 279 ------KKIKDLGEEEQLRVkekIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELER---EIEEER 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 161 GRLRDDIKEYKFREARLLQDYSELEEENISLQKQVSVLRQNQVEFEGLKHEI--------------KRLEEETEYLNSQL 226
Cdd:TIGR02169 350 KRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREInelkreldrlqeelQRLSEELADLNAAI 429
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 76008363 227 EDAI--------RLKEI------SERQLEEALETLKTEREQKNNLRKELSHY 264
Cdd:TIGR02169 430 AGIEakineleeEKEDKaleikkQEWKLEQLAADLSKYEQELYDLKEEYDRV 481
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
22-264 |
2.50e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 54.69 E-value: 2.50e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 22 LRAEVKRLSHELAETTREKIQAAEYGLAVLEEKHQLKLQFEELEVDYEAIRSEMEQLKEAFGQAHTNHKKVAADGESREE 101
Cdd:TIGR02169 707 LSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEA 786
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 102 SLiqeSASKEQYYVRKVLELQTELKQLRNVLINTQSENERLTSVAQELKEINQNVEIQRGRLRDDIKEYKFREARLLQDY 181
Cdd:TIGR02169 787 RL---SHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKK 863
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 182 SELEEENISLQKQVSVLRQnqvEFEGLKHEIKRLEEETEYLNSQLEDAirlkeisERQLEEALETLKTEREQKNNLRKEL 261
Cdd:TIGR02169 864 EELEEELEELEAALRDLES---RLGDLKKERDELEAQLRELERKIEEL-------EAQIEKKRKRLSELKAKLEALEEEL 933
|
...
gi 76008363 262 SHY 264
Cdd:TIGR02169 934 SEI 936
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
102-513 |
3.55e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.29 E-value: 3.55e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 102 SLIQESASKEQYYVRKvleLQTELKqlrnvLINTQSENERLTSVAQELKEinqnveiQRGRLRddikeykfREARLLQDY 181
Cdd:TIGR02168 159 AIFEEAAGISKYKERR---KETERK-----LERTRENLDRLEDILNELER-------QLKSLE--------RQAEKAERY 215
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 182 SELEEENISLQKQVSVLRqnqvefeglkheIKRLEEETEYLNSQLEDAIRLKEISERQLEEALETLKTEREQKNNLRKEL 261
Cdd:TIGR02168 216 KELKAELRELELALLVLR------------LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEI 283
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 262 SHYMSINDSFYT--SHLQVSLDGLKFSDDAVTAEPNNDAEALVNGFEHSGLVKASLdnKTSTPRKDGLAPpspslvsdll 339
Cdd:TIGR02168 284 EELQKELYALANeiSRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEEL--AELEEKLEELKE---------- 351
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 340 selhisEIQKLKQQLVQMEREKVGLLATLQDTQKQLEQARGtlseqheKVSRLTENLSALR-RLQAGKERQTSLDNEKDR 418
Cdd:TIGR02168 352 ------ELESLEAELEELEAELEELESRLEELEEQLETLRS-------KVAQLELQIASLNnEIERLEARLERLEDRRER 418
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 419 DSHEDGDyyevdiNGPEILSCKYHVAVAEAGELREQLKALHSTHEAREAQLAEEKGRYEAEVQALTEKVSLLEKAShQDQ 498
Cdd:TIGR02168 419 LQQEIEE------LLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQ-ARL 491
|
410
....*....|....*
gi 76008363 499 ELLAQLEKELRKVSD 513
Cdd:TIGR02168 492 DSLERLQENLEGFSE 506
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
22-262 |
1.55e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.86 E-value: 1.55e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 22 LRAEVKRLSHELAETTREKIQAAEYGLAvlEEKHQLKLQFEELEVDYEAIRSEMEQLKEAFgqahtnhkkvaadgeSREE 101
Cdd:COG1196 218 LKEELKELEAELLLLKLRELEAELEELE--AELEELEAELEELEAELAELEAELEELRLEL---------------EELE 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 102 SLIQESASKEQYYVRKVLELQTELKQLRNVLINTQSENERLTSVAQELKEINQNVEIQRGRLRDDIKEYKFREARLLQDY 181
Cdd:COG1196 281 LELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAEL 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 182 SELEEENISLQKQVSVLRQNQVEFEglKHEIKRLEEETEYLNSQLEDAIRLKEISERQ--LEEALETLKTEREQKNNLRK 259
Cdd:COG1196 361 AEAEEALLEAEAELAEAEEELEELA--EELLEALRAAAELAAQLEELEEAEEALLERLerLEEELEELEEALAELEEEEE 438
|
...
gi 76008363 260 ELS 262
Cdd:COG1196 439 EEE 441
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
116-539 |
2.24e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 51.31 E-value: 2.24e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 116 RKVLELQTELKQLRNVLINTQSENERLTSVAQELKEINQ---NVEIQRGRLRDDIKEYKFREA--RLLQDYSELEEENIS 190
Cdd:COG4717 64 RKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEeleELEAELEELREELEKLEKLLQllPLYQELEALEAELAE 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 191 LQKQVSVLRQNQVEFEGLKHEIKRLEEETEYLNSQLEDAIR-LKEISERQLEEALETLKTEREQKNNLRKELSHYMSIND 269
Cdd:COG4717 144 LPERLEELEERLEELRELEEELEELEAELAELQEELEELLEqLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELE 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 270 SFYTSHLQVSLDGLKFSDDAVTAEPNNDAEALVNGFEHSGLVKASLDNKTSTP------------RKDGLAPPSPSLVSD 337
Cdd:COG4717 224 ELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAgvlflvlgllalLFLLLAREKASLGKE 303
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 338 LLSELHISEIQKLKQQLVQMEREKVGLLATLQDTqkQLEQARGTLSEQHEKVSRLTENLSALRRLQAGKERQTSLDNEKD 417
Cdd:COG4717 304 AEELQALPALEELEEEELEELLAALGLPPDLSPE--ELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGV 381
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 418 RDsheDGDYYEVDINGPEilsckYHVAVAEAGELREQLKALHSTHEAREAQLAEEkgRYEAEVQALTEKVSLLEKASHQD 497
Cdd:COG4717 382 ED---EEELRAALEQAEE-----YQELKEELEELEEQLEELLGELEELLEALDEE--ELEEELEELEEELEELEEELEEL 451
|
410 420 430 440
....*....|....*....|....*....|....*....|..
gi 76008363 498 QELLAQLEKELRKVsdvagETQGSLNVAQDELVTFSEELANL 539
Cdd:COG4717 452 REELAELEAELEQL-----EEDGELAELLQELEELKAELREL 488
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
20-301 |
2.85e-06 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 51.06 E-value: 2.85e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 20 EWLRAEVKRLSHELAET-TREKIQAAEYGLAVLEEKHQLKLQfEELEVDYEAIRSEMEQLKEAFGQAHTNHKKVAADGES 98
Cdd:PLN02939 166 EALQGKINILEMRLSETdARIKLAAQEKIHVEILEEQLEKLR-NELLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQF 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 99 REESLIQESASKEQYYVrkvLE-----LQTELKQLRNVLINTQSENERLTSVAQE-LKEINQNVEIQRGRLRDDIKEYkf 172
Cdd:PLN02939 245 LKAELIEVAETEERVFK---LEkerslLDASLRELESKFIVAQEDVSKLSPLQYDcWWEKVENLQDLLDRATNQVEKA-- 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 173 reARLLQDYSELEEENISLQ---KQVSVLRQNQVEFEGLKHEIKRLEEETEYLNSQLEDAIRLKEISERQLEEALETLKT 249
Cdd:PLN02939 320 --ALVLDQNQDLRDKVDKLEaslKEANVSKFSSYKVELLQQKLKLLEERLQASDHEIHSYIQLYQESIKEFQDTLSKLKE 397
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 76008363 250 EREqknnlRKELSHYMSINDSFYTSHLQVSLDGLKFSDDAvtaePNNDAEAL 301
Cdd:PLN02939 398 ESK-----KRSLEHPADDMPSEFWSRILLLIDGWLLEKKI----SNNDAKLL 440
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
346-522 |
3.86e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 50.71 E-value: 3.86e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 346 EIQKLKQQLVQMEREKVGLLATLQDTQKQLEQARGTLSEQHEKVSRLTENLSALRRLQAGKERQTSLDNEKDRDSHEDGD 425
Cdd:COG1196 240 ELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLE 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 426 YYEVDIngpEILSCKYHVAVAEAGELREQLKALHSTHEAREAQLAEEKGRYEAEVQALTEKVSLLEKASHQDQELLAQLE 505
Cdd:COG1196 320 ELEEEL---AELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAA 396
|
170
....*....|....*..
gi 76008363 506 KELRKVSDVAGETQGSL 522
Cdd:COG1196 397 ELAAQLEELEEAEEALL 413
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
52-812 |
5.24e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.44 E-value: 5.24e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 52 EEKHQLKLQFEELEV-----DYEAIRSEMEQLKEAFGQAHTNHKkvaadgesREESLIQESASKEQYYVRKVLELQTELK 126
Cdd:TIGR02168 213 ERYKELKAELRELELallvlRLEELREELEELQEELKEAEEELE--------ELTAELQELEEKLEELRLEVSELEEEIE 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 127 QLRNVLINTQSENERLTSVAQELKEINQNVEIQRGRLRDDIKEYKFREARLLQDYSELEEENISLQKqvsvlrqnqvEFE 206
Cdd:TIGR02168 285 ELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKE----------ELE 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 207 GLKHEIKRLEEETEYLNSQLEDAIRLKEISERQLEEALETLKTEREQKNNLRKELshymsindsfytSHLQVSLDGLKfs 286
Cdd:TIGR02168 355 SLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARL------------ERLEDRRERLQ-- 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 287 ddavtaepnndaealvngfehsglvkasldnktstprkdglappspSLVSDLLSELHISEIQKLKQQLVQMEREKVGLLA 366
Cdd:TIGR02168 421 ----------------------------------------------QEIEELLKKLEEAELKELQAELEELEEELEELQE 454
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 367 TLQDTQKQLEQARGTLSEQHEKVsrltenLSALRRLQAGKERQTSLdneKDRDSHEDGDYYEV--------DINGP---- 434
Cdd:TIGR02168 455 ELERLEEALEELREELEEAEQAL------DAAERELAQLQARLDSL---ERLQENLEGFSEGVkallknqsGLSGIlgvl 525
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 435 -EILSC--KYHVAVAEAGELREQLKALHSTHEAREAQlaeekgryEAEVQALTEKVSLLEKASHQDQELLAQLEKELRKV 511
Cdd:TIGR02168 526 sELISVdeGYEAAIEAALGGRLQAVVVENLNAAKKAI--------AFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNI 597
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 512 SDVAGetqgslnvAQDELVTFSEE----LANLYHHVCMCNNETPNRVMLDYYREGQ----------GKAGRTSPEGRGRR 577
Cdd:TIGR02168 598 EGFLG--------VAKDLVKFDPKlrkaLSYLLGGVLVVDDLDNALELAKKLRPGYrivtldgdlvRPGGVITGGSAKTN 669
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 578 SPVLLPKG-----------------LLSTEIGRADGGTgDNSPSPSSSLPSPLSDPRREPMNIYNLIAIIRDQIKHLQAA 640
Cdd:TIGR02168 670 SSILERRReieeleekieeleekiaELEKALAELRKEL-EELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEER 748
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 641 VDRT-----------TELSRQRIASQELGPAVDKDKEALMEEILKLKSLLSTKREQITTLRTVLKANKQTAEVALANLKS 709
Cdd:TIGR02168 749 IAQLskelteleaeiEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLES 828
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 710 kYENEKAMVTETMMKLRNELKALKEDAATFSSLRAMFATRCDEYITQLDE-------MQRQLAAAEDEKKTLNSLLRMAI 782
Cdd:TIGR02168 829 -LERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEAllnerasLEEALALLRSELEELSEELRELE 907
|
810 820 830
....*....|....*....|....*....|
gi 76008363 783 QQKLALTQRLELLELDHEQTRRGRNKATSK 812
Cdd:TIGR02168 908 SKRSELRRELEELREKLAQLELRLEGLEVR 937
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
6-200 |
5.64e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.38 E-value: 5.64e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 6 EEEEYARLVMEAQPEWLRAEVKRLSHELAETTReKIQAAEYGLAVLEEK-HQLKLQFEELEVDYEAIRSEM-EQLKEAFG 83
Cdd:COG4942 37 AELEKELAALKKEEKALLKQLAALERRIAALAR-RIRALEQELAALEAElAELEKEIAELRAELEAQKEELaELLRALYR 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 84 QAHTNHKKVAADGESreeslIQESASKEQYYVRKVLELQTELKQLRNVLINTQSENERLTSVAQELKEINQNVEIQRGRL 163
Cdd:COG4942 116 LGRQPPLALLLSPED-----FLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAAL 190
|
170 180 190
....*....|....*....|....*....|....*..
gi 76008363 164 RDDIKEYKFREARLLQDYSELEEENISLQKQVSVLRQ 200
Cdd:COG4942 191 EALKAERQKLLARLEKELAELAAELAELQQEAEELEA 227
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
6-247 |
7.75e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 49.67 E-value: 7.75e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 6 EEEEYARLVMEAQPEWLRAEVKRLS-HELAETTREKIQAAEYGLAVLEEKHQ-LKLQFEELEVDYEAIRSEMEQLKEAFG 83
Cdd:TIGR02168 762 EIEELEERLEEAEEELAEAEAEIEElEAQIEQLKEELKALREALDELRAELTlLNEEAANLRERLESLERRIAATERRLE 841
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 84 QAHTNHKKVAADGESREESLIQESASKEqyyvrkvlELQTELKQLRNVLINTQSE----NERLTSVAQELKEINQNV--- 156
Cdd:TIGR02168 842 DLEEQIEELSEDIESLAAEIEELEELIE--------ELESELEALLNERASLEEAlallRSELEELSEELRELESKRsel 913
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 157 EIQRGRLRDDIKEYKFREARLLQDYSEL-----EEENISLQKQVSVLRQNQVEFEGLKHEIKRLEEETEYLNSQLEDAI- 230
Cdd:TIGR02168 914 RRELEELREKLAQLELRLEGLEVRIDNLqerlsEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIe 993
|
250 260
....*....|....*....|....*.
gi 76008363 231 RLKEISERQ---------LEEALETL 247
Cdd:TIGR02168 994 EYEELKERYdfltaqkedLTEAKETL 1019
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
6-541 |
1.03e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 49.28 E-value: 1.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 6 EEEEYARLVMEAQPEWLRAEVKRLSHELAETTREKIQAAEYGLAVLEEKHQLKLQFEELEVDYEAIRSEMEQLKEAfGQA 85
Cdd:TIGR02168 319 EELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQ-IAS 397
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 86 HTNH----KKVAADGESREESLIQESASKEQYYVR-KVLELQTELKQLRNVLINTQSENERLTSVAQELKEINQNVEIQR 160
Cdd:TIGR02168 398 LNNEierlEARLERLEDRRERLQQEIEELLKKLEEaELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQAL 477
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 161 GRLRDDIKEYKFREARLlqdySELEEENISLQKQVSVLRQNQVEFEGLKHEIKRLEEETEYLNSQLEDAIR-----LKEI 235
Cdd:TIGR02168 478 DAAERELAQLQARLDSL----ERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAALGgrlqaVVVE 553
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 236 SERQLEEALETLKTEREQKNNLRKELSHYMSINDSFYTSHLQVSLDGLKFSDDAVTAEPnnDAEALVNGFEHSGLVKASL 315
Cdd:TIGR02168 554 NLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDP--KLRKALSYLLGGVLVVDDL 631
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 316 DNKTSTPRKDGLAPPSPSLVSDLL---------SELHISEIQKLKQQLVQMEREKVGLLATLQDTQKQLEQARGTLSEqh 386
Cdd:TIGR02168 632 DNALELAKKLRPGYRIVTLDGDLVrpggvitggSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEE-- 709
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 387 ekvsrLTENLSALRRLQAGKERQTSLDNEKDRDSHEDGDYYEVDINGPEILSCKYHVAVAEAGELREQLKALHSTHEARE 466
Cdd:TIGR02168 710 -----LEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEI 784
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 76008363 467 AQLAEEKGRYEAEVQALTEKVSLLEKASHQDQELLAQLEKELRKVSDVAGETQGSLNVAQDELVTFSEELANLYH 541
Cdd:TIGR02168 785 EELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAA 859
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
6-271 |
1.05e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.30 E-value: 1.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 6 EEEEYARLVMEAQPEwLRAEVKRLSHELAETtREKIQAAEyglAVLEEKHQLKLQFEELEVDYEAIRSEMEQLKEAFGQa 85
Cdd:TIGR02169 781 LNDLEARLSHSRIPE-IQAELSKLEEEVSRI-EARLREIE---QKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEK- 854
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 86 htnhkkvaadgesREESLIQESASKEQyyvrKVLELQTELKQLRNVLINTQSENERLTSVAQELKEINQNVEIQRGRLRD 165
Cdd:TIGR02169 855 -------------EIENLNGKKEELEE----ELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRK 917
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 166 DIKEYKFREARLLQDYSELEEENISLQKQVSvlrqNQVEFEGLKHEIKRLEEETEYLNSQLEDAIRLKEISER---QLEE 242
Cdd:TIGR02169 918 RLSELKAKLEALEEELSEIEDPKGEDEEIPE----EELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKrldELKE 993
|
250 260 270
....*....|....*....|....*....|....*...
gi 76008363 243 ALETLKTER-------EQKNNLRKE--LSHYMSINDSF 271
Cdd:TIGR02169 994 KRAKLEEERkaileriEEYEKKKREvfMEAFEAINENF 1031
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
32-261 |
1.34e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 48.95 E-value: 1.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 32 ELAETTREKIQAAEYGLAVLEEKHQLKL-QFEELEVDYEAIRSEMEQLKEAFGQAHT------NHKKVAADGESREESL- 103
Cdd:pfam05483 363 ELLRTEQQRLEKNEDQLKIITMELQKKSsELEEMTKFKNNKEVELEELKKILAEDEKlldekkQFEKIAEELKGKEQELi 442
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 104 --------------IQESASK--EQYYVRKVLELQTELKQLRNVLINTQSENERLTSVAQELKEINQNVEIQRGRLRDDI 167
Cdd:pfam05483 443 fllqarekeihdleIQLTAIKtsEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDI 522
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 168 KEYKFREARLLQDYSELEEENISLQKQVSVLRQnqvEFEGLKHEIKRLEEETEYLNSQLEDAIRLKEISERQLEEALETL 247
Cdd:pfam05483 523 INCKKQEERMLKQIENLEEKEMNLRDELESVRE---EFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNL 599
|
250
....*....|....
gi 76008363 248 KTEREQKNNLRKEL 261
Cdd:pfam05483 600 KKQIENKNKNIEEL 613
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
22-539 |
1.62e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.76 E-value: 1.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 22 LRAEVKRLS-----HELAETTREKIQAAEYGLAVL------EEKHQLKLQFEELEVDYEAIRSEMEQLKEAFGQAHTN-- 88
Cdd:COG4913 247 AREQIELLEpirelAERYAAARERLAELEYLRAALrlwfaqRRLELLEAELEELRAELARLEAELERLEARLDALREEld 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 89 --HKKVAADGESREESLIQESASKEQYYVRKVLELQTELKQLRNVLINTQSENERLTSVAQELKEINQNVEIQRGRLRDD 166
Cdd:COG4913 327 elEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEA 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 167 IKEYKFREARLLQDYSELEEENISLQKQVSVLRQNQVEF-----EGLKH------------EIKRLEEETE-----YLNS 224
Cdd:COG4913 407 LAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALrdalaEALGLdeaelpfvgeliEVRPEEERWRgaierVLGG 486
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 225 Q----------LEDAIRLkeISERQLEEALETLKTEREQKNNLRKE-----LSHYMSINDSFYTSHLQVSL--------- 280
Cdd:COG4913 487 FaltllvppehYAAALRW--VNRLHLRGRLVYERVRTGLPDPERPRldpdsLAGKLDFKPHPFRAWLEAELgrrfdyvcv 564
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 281 ---DGLKFSDDAVTAEpnndaealvngfehsGLVKASLDNKTSTPRKDGLAPPspslvsdLLSELHISEIQKLKQQLVQM 357
Cdd:COG4913 565 dspEELRRHPRAITRA---------------GQVKGNGTRHEKDDRRRIRSRY-------VLGFDNRAKLAALEAELAEL 622
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 358 EREkvglLATLQDTQKQLEQARGTLSEQHEKVSRLTENLSALRRLQAGKERQTSLDNEKDRDSHEDGDyyevdingpeil 437
Cdd:COG4913 623 EEE----LAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAELERLDASSDD------------ 686
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 438 sckyhvaVAEAGELREQLKALHSTHEAREAQLAEEKGRYEAEVQALTEKVSLLEKA-----SHQDQELLAQLEKEL---- 508
Cdd:COG4913 687 -------LAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRleaaeDLARLELRALLEERFaaal 759
|
570 580 590
....*....|....*....|....*....|...
gi 76008363 509 --RKVSDVAGETQGSLNVAQDELVTFSEELANL 539
Cdd:COG4913 760 gdAVERELRENLEERIDALRARLNRAEEELERA 792
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
345-510 |
1.83e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 46.84 E-value: 1.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 345 SEIQKLKQQLVQMEREKVGLLATLQDTQKQLEQARGTLSEQHEKVSRLTENLSALR-RLQAGKERQTSLDNEKDRDSHED 423
Cdd:COG1579 17 SELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEaRIKKYEEQLGNVRNNKEYEALQK 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 424 gdyyEVDINGPEILSCKYHV--AVAEAGELREQLKALHSTHEAREAQLAEEKGRYEAEVQALTEKVSLLEKAShqdQELL 501
Cdd:COG1579 97 ----EIESLKRRISDLEDEIleLMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAER---EELA 169
|
....*....
gi 76008363 502 AQLEKELRK 510
Cdd:COG1579 170 AKIPPELLA 178
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
60-510 |
2.04e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 48.23 E-value: 2.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 60 QFEELEVDYEAIRSEMEQLKEAFGQAHTNHKKVAAdGESREESLIQESASKEQyyVRKVLELQTELKQLRNVLintQSEN 139
Cdd:COG4717 72 ELKELEEELKEAEEKEEEYAELQEELEELEEELEE-LEAELEELREELEKLEK--LLQLLPLYQELEALEAEL---AELP 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 140 ERLTSVAQELKEInQNVEIQRGRLRDDIKEYKFREARLLQDYSELEEENIS-----LQKQVSVLRQNQVEFEGLKHEIKR 214
Cdd:COG4717 146 ERLEELEERLEEL-RELEEELEELEAELAELQEELEELLEQLSLATEEELQdlaeeLEELQQRLAELEEELEEAQEELEE 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 215 LEEETEYLNSQLEDAIRLKEISERQLEEALETLktereqknnlrkeLSHYMSINDSFYTSHLQVS---------LDGLKF 285
Cdd:COG4717 225 LEEELEQLENELEAAALEERLKEARLLLLIAAA-------------LLALLGLGGSLLSLILTIAgvlflvlglLALLFL 291
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 286 SDDAVTAEPNNDAEALVNGFEHSGLVKASLDNKTStpRKDGLAPPSPSLVSDLLSelHISEIQKLKQQLVQMEREKvgLL 365
Cdd:COG4717 292 LLAREKASLGKEAEELQALPALEELEEEELEELLA--ALGLPPDLSPEELLELLD--RIEELQELLREAEELEEEL--QL 365
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 366 ATLQDTQKQLEQARGTLSEQhekvsRLTENLSALRRLQAGKERQTSLdnEKDRDSHEDGDYYEVDINGPEILSckyhvav 445
Cdd:COG4717 366 EELEQEIAALLAEAGVEDEE-----ELRAALEQAEEYQELKEELEEL--EEQLEELLGELEELLEALDEEELE------- 431
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 76008363 446 AEAGELREQLKALhsthEAREAQLAEEKGRYEAEVQALtEKVSLLEKASHQDQELLAQLEKELRK 510
Cdd:COG4717 432 EELEELEEELEEL----EEELEELREELAELEAELEQL-EEDGELAELLQELEELKAELRELAEE 491
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
20-229 |
3.15e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 47.70 E-value: 3.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 20 EWLRAEVKRLSHELAETtREKIQA--AEYGLAVLEEKHQLKL-QFEELEVDYEAIRSEMEQLKEAFGQAhtnhKKVAADG 96
Cdd:COG3206 178 EFLEEQLPELRKELEEA-EAALEEfrQKNGLVDLSEEAKLLLqQLSELESQLAEARAELAEAEARLAAL----RAQLGSG 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 97 ESREESLIQESAskEQYYVRKVLELQTELKQLRNVLintQSENERLTSVAQELKEINQNVEIQRGRLRDDIK-EYKFREA 175
Cdd:COG3206 253 PDALPELLQSPV--IQQLRAQLAELEAELAELSARY---TPNHPDVIALRAQIAALRAQLQQEAQRILASLEaELEALQA 327
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 76008363 176 RLlqdySELEEENISLQKQVSVLRQNQVEFEGLKHEIKRLEEETEYLNSQLEDA 229
Cdd:COG3206 328 RE----ASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEA 377
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
22-262 |
4.56e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.37 E-value: 4.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 22 LRAEVKRLSHELAETTREKIQAAEYGLAVLEEKHQLKLQFEELEVDYEAIRSEMEQLKEAFGQAHTNHKKVAADGESREE 101
Cdd:TIGR02169 672 EPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 102 SLIQESASKEQYYVRKVlELQTELKQLRNVLINTQSE--NERLTSVAQELKEINQNVEIQRGRLRD---DIKEYKFREAR 176
Cdd:TIGR02169 752 EIENVKSELKELEARIE-ELEEDLHKLEEALNDLEARlsHSRIPEIQAELSKLEEEVSRIEARLREieqKLNRLTLEKEY 830
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 177 LLQDYSELEEENISLQKQVSVLRQNQVEFEGLKHEIKRLEEETEYlnsqledairlkeiSERQLEEALETLKTEREqknN 256
Cdd:TIGR02169 831 LEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEA--------------ALRDLESRLGDLKKERD---E 893
|
....*.
gi 76008363 257 LRKELS 262
Cdd:TIGR02169 894 LEAQLR 899
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
100-262 |
5.34e-05 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 46.99 E-value: 5.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 100 EESLIQESASKEQYYVRKVLELQTELKQLRnvlintqsenerltSVAQELKEINQNVEIQRGRLRDDIKEYKfreaRLLQ 179
Cdd:COG5022 938 NNIDLEEGPSIEYVKLPELNKLHEVESKLK--------------ETSEEYEDLLKKSTILVREGNKANSELK----NFKK 999
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 180 DYSELEEENISLQKQVSVLRQNQVEFEGLKHEIKRLEEETEYLNSQ--LEDAIRLKEISERQLEEALETLKTEREQKNNL 257
Cdd:COG5022 1000 ELAELSKQYGALQESTKQLKELPVEVAELQSASKIISSESTELSILkpLQKLKGLLLLENNQLQARYKALKLRRENSLLD 1079
|
....*
gi 76008363 258 RKELS 262
Cdd:COG5022 1080 DKQLY 1084
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
22-256 |
5.12e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.21 E-value: 5.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 22 LRAEVKRLSHELAETTREKIQAAEYGLAVLEEKHQLKLQFEELEVDYEAIRSEMEQLKEAFGQAhtnhkkvaadgESREE 101
Cdd:COG4942 25 AEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAEL-----------EKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 102 SLIQESASKEQYYVRKVLELQTELKQLRNVLINTQSENERLTSVAQELKEINQNVEIQRGRLRDDIKEykfrearLLQDY 181
Cdd:COG4942 94 ELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAE-------LAALR 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 76008363 182 SELEEENISLQKQVSVLRQNQVEFEGLKHEIKRLEEETEYLNSQLEDAIRLKEISERQLEEALETLKTEREQKNN 256
Cdd:COG4942 167 AELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
54-260 |
5.70e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.47 E-value: 5.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 54 KHQLKLQFEELEVDYEAIRSEMEQLKEAFGQAHTNHKKVAADGESREESL------IQESASKEQYYVRKVLELQTELKQ 127
Cdd:TIGR04523 463 RESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVkdltkkISSLKEKIEKLESEKKEKESKISD 542
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 128 LRNVLINTQSENERlTSVAQELKEINQNVEiqrgRLRDDIKEYKFREARLLQDYSELEEENISLQKQVSvlrQNQVEFEG 207
Cdd:TIGR04523 543 LEDELNKDDFELKK-ENLEKEIDEKNKEIE----ELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIE---EKEKKISS 614
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 76008363 208 LKHEIKRLEEETEYLNSQLEDAIRLKEISERQLEEALETLKTEREQKNNLRKE 260
Cdd:TIGR04523 615 LEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKK 667
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
22-261 |
8.91e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 8.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 22 LRAEVKRLS--HELAETTREKIQAaeygLAVLEEKHQlklQFEELEVDYEAIRSEMEQLKEAFGQahtnhkKVAADGESR 99
Cdd:COG4913 230 LVEHFDDLEraHEALEDAREQIEL----LEPIRELAE---RYAAARERLAELEYLRAALRLWFAQ------RRLELLEAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 100 EESLIQESASKEQyyvrKVLELQTELKQLRNVLINTqsENERLTSVAQELKEINQnveiQRGRLRDDIKEYKFREARLLQ 179
Cdd:COG4913 297 LEELRAELARLEA----ELERLEARLDALREELDEL--EAQIRGNGGDRLEQLER----EIERLERELEERERRRARLEA 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 180 DYSELEEEnislqkqvsvLRQNQVEFEGLKHEIKRLEEETEYLNSQLEDAIRLKEISERQLEEALETLKTERE----QKN 255
Cdd:COG4913 367 LLAALGLP----------LPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIAslerRKS 436
|
....*.
gi 76008363 256 NLRKEL 261
Cdd:COG4913 437 NIPARL 442
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
22-539 |
1.00e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 42.72 E-value: 1.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 22 LRAEVKRLSHELAETTREKIQAAEY---GLAVLEEKHQLKLQFEELEVDYEAIR---SEMEQLKEAFGQAHTNHKKVAAD 95
Cdd:PRK02224 211 LESELAELDEEIERYEEQREQARETrdeADEVLEEHEERREELETLEAEIEDLRetiAETEREREELAEEVRDLRERLEE 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 96 GESREESLIQE----SASKEQYYVRKVlELQTELKQLRnvlintqsenERLTSVAQELKEINQNVEiqrgRLRDDIKEYK 171
Cdd:PRK02224 291 LEEERDDLLAEagldDADAEAVEARRE-ELEDRDEELR----------DRLEECRVAAQAHNEEAE----SLREDADDLE 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 172 FREARLLQDYSELEEEnisLQKQVSVLRQNQVEFEGLKHEIKRLEEETEYLNSQLEDAirlkeisERQLEEALETLKTER 251
Cdd:PRK02224 356 ERAEELREEAAELESE---LEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNA-------EDFLEELREERDELR 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 252 EQKNNLRKElshymsindsfytshlqvsldgLKFSDDAVtaepnNDAEALVNgfehsglvkasldnktstprkdglAPPS 331
Cdd:PRK02224 426 EREAELEAT----------------------LRTARERV-----EEAEALLE------------------------AGKC 454
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 332 PSLVSDLLSELHISEIQKLKQQLVQMEREKVGLLATLQDTQKQLEQARgTLSEQHEKVSRLTENLSALRRLQAGKERQTS 411
Cdd:PRK02224 455 PECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAE-DLVEAEDRIERLEERREDLEELIAERRETIE 533
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 412 LDNEKDRDSHEDGDYYEVDINGPEILSCKYHVAVAEA----GELREQLKALHSTHEA--REAQLAEEKGRYEAEVQALTE 485
Cdd:PRK02224 534 EKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAreevAELNSKLAELKERIESleRIRTLLAAIADAEDEIERLRE 613
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*
gi 76008363 486 KVSLLEKASHQDQELLAqlEKELRKvSDVAGETQGS-LNVAQDELVTFSEELANL 539
Cdd:PRK02224 614 KREALAELNDERRERLA--EKRERK-RELEAEFDEArIEEAREDKERAEEYLEQV 665
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
131-414 |
1.03e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 1.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 131 VLINTQSENERLTSVAQELKEINQNVEiqrgRLRDDIKEYKFREARLLQDYSELEEENISLQKQVSVLRQNQVEFEGlkh 210
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIA----ELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEA--- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 211 EIKRLEEETEYLNSQLEdaiRLKEISERQLEEAletlktereQKNNLRKELSHYMSINDSFYTSHLQVSLDGLKFSDDAV 290
Cdd:COG4942 84 ELAELEKEIAELRAELE---AQKEELAELLRAL---------YRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQ 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 291 TAEPNNDAEALVNgfehsglVKASLDNKTSTPRKDglappspslvsdllselhISEIQKLKQQLVQMEREKVGLLATLqd 370
Cdd:COG4942 152 AEELRADLAELAA-------LRAELEAERAELEAL------------------LAELEEERAALEALKAERQKLLARL-- 204
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 76008363 371 tQKQLEQARGTLSEQHEKVSRLTENLSALRRLQAGKERQTSLDN 414
Cdd:COG4942 205 -EKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAG 247
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
345-539 |
1.60e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 1.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 345 SEIQKLKQQLVQMEREKVGLLATLQDTQKQLEQARGTLSEQHEKVSRLTENLSAL--------RRLQAGKERQTSLDNEK 416
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALeqelaaleAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 417 DRDSHEDGD-----YYEVDINGPEILsckyhVAVAEAGELREQLKALHSTHEAREAQLAEekgrYEAEVQALTEKVSLLE 491
Cdd:COG4942 100 EAQKEELAEllralYRLGRQPPLALL-----LSPEDFLDAVRRLQYLKYLAPARREQAEE----LRADLAELAALRAELE 170
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 76008363 492 KASHQDQELLAQLEKELRKVSDVAGETQGSLNVAQDELVTFSEELANL 539
Cdd:COG4942 171 AERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAEL 218
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
346-507 |
1.62e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 1.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 346 EIQKLKQQLVQMEREKVGLLATLQDTQKQLEQARGTLSEQHEKVSRLTENLSALRRLQAgkERQTSLDNEKDR------- 418
Cdd:COG4942 35 EIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIA--ELRAELEAQKEElaellra 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 419 --------------------DSHEDGDYYEVDINGPEILSCKYHVAVAEAGELREQLKALHSTHEAREAQLAEEKGRYEA 478
Cdd:COG4942 113 lyrlgrqpplalllspedflDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEA 192
|
170 180
....*....|....*....|....*....
gi 76008363 479 EVQALTEKVSLLEKASHQDQELLAQLEKE 507
Cdd:COG4942 193 LKAERQKLLARLEKELAELAAELAELQQE 221
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
113-265 |
2.36e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 41.30 E-value: 2.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 113 YYVRKVLeLQTELKQLRNVLINTQSENERLTSVAQELKEINQNVEIQRGR------LRDDIKEYKFREARLLQDYSELEE 186
Cdd:PRK12704 22 YFVRKKI-AEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRnefekeLRERRNELQKLEKRLLQKEENLDR 100
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 76008363 187 ENISLQKQVSVLRQNQVEFEGLKHEIKRLEEETEYLNSQLEDaiRLKEISERQLEEALETLKTEREQKnnLRKELSHYM 265
Cdd:PRK12704 101 KLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQ--ELERISGLTAEEAKEILLEKVEEE--ARHEAAVLI 175
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
60-263 |
2.38e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 41.65 E-value: 2.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 60 QFEELEVDYEAIRSEMEQLKEAFGQAHTNHKKVAADGESREESLIQESASKEQyyvrKVLELQTELKQLRNVLINTQSEN 139
Cdd:pfam05557 59 LLEKREAEAEEALREQAELNRLKKKYLEALNKKLNEKESQLADAREVISCLKN----ELSELRRQIQRAELELQSTNSEL 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 140 ERLTSVAQELKEINQNVEIQRGRLRDDIKEYKFREARLlqdySELEEEnISLQKQ----VSVLRQNQVEFEGLKHEIKRL 215
Cdd:pfam05557 135 EELQERLDLLKAKASEAEQLRQNLEKQQSSLAEAEQRI----KELEFE-IQSQEQdseiVKNSKSELARIPELEKELERL 209
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 76008363 216 EEETEYLNSQLEDAIRLKEISErQLEEALETLKTEREQKNNLRKELSH 263
Cdd:pfam05557 210 REHNKHLNENIENKLLLKEEVE-DLKRKLEREEKYREEAATLELEKEK 256
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
23-260 |
2.55e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 41.67 E-value: 2.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 23 RAEVKRLSHELAETTREKIQAAEYGLAVLEEK--HQLKLQFEELEVDYEAIRSEMEQLKEAFGQAHTNHKKVAADGESRE 100
Cdd:PTZ00121 1452 KAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKkaDEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAE 1531
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 101 ESLIQESASKEQYyVRKVLELQT--ELK---QLRNVLINTQSENERLTSV--AQELKEINQNVEIQRGRLRDDIKEYKFR 173
Cdd:PTZ00121 1532 EAKKADEAKKAEE-KKKADELKKaeELKkaeEKKKAEEAKKAEEDKNMALrkAEEAKKAEEARIEEVMKLYEEEKKMKAE 1610
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 174 EARLLQDYSELEEE---NISLQKQVSVLRQNQVEFEGLKHEIKRLEEETEYLNSQLEdaiRLKEISERQLEEALETLKTE 250
Cdd:PTZ00121 1611 EAKKAEEAKIKAEElkkAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEA---KKAEEDKKKAEEAKKAEEDE 1687
|
250
....*....|
gi 76008363 251 REQKNNLRKE 260
Cdd:PTZ00121 1688 KKAAEALKKE 1697
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
337-539 |
2.91e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 41.46 E-value: 2.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 337 DLLSELHISEIQKLKQQLVQMEREKVGLLATLQDTQKQLEQARGTLSEQHEKVSRLTENLSALR-RLQAGKERQTSLDNE 415
Cdd:COG1196 217 ELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELElELEEAQAEEYELLAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 416 KDRdSHEDGDYYEVDINGpeilsckYHVAVAEAGELREQLKALHSTHEAREAQLAEEKGRYEAEVQALTEKVSLLEKASH 495
Cdd:COG1196 297 LAR-LEQDIARLEERRRE-------LEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALL 368
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 76008363 496 QDQELLAQLEKELRKVSDVAGETQGSLNVAQDELVTFSEELANL 539
Cdd:COG1196 369 EAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEAL 412
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
343-539 |
3.65e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.05 E-value: 3.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 343 HISEIQKLKQQLVQmEREKVGLLATLQDTQKQLEQARGTLSEQHEKVSRLTEnLSALRRLQAGKERQTSLDNEKDRdsHE 422
Cdd:COG4913 233 HFDDLERAHEALED-AREQIELLEPIRELAERYAAARERLAELEYLRAALRL-WFAQRRLELLEAELEELRAELAR--LE 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 423 DgdyyEVDINGPEILSCKYHVAVAEA------GELREQLKALHSTHEAREAQLAEEKGRYEAEVQALTEKVSL----LEK 492
Cdd:COG4913 309 A----ELERLEARLDALREELDELEAqirgngGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPAsaeeFAA 384
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 76008363 493 ASHQDQELLAQLEKELRKVSDVAGETQGSLNVAQDELVTFSEELANL 539
Cdd:COG4913 385 LRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASL 431
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
348-540 |
3.69e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 41.08 E-value: 3.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 348 QKLKQQLvqMEREKVGLLATLQDTQKQLEQARGTLSEQHEKVSRLTEnlsALRRLQAGKERQTSLDNEKDRDSHEDGDyy 427
Cdd:COG1196 216 RELKEEL--KELEAELLLLKLRELEAELEELEAELEELEAELEELEA---ELAELEAELEELRLELEELELELEEAQA-- 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 428 evdingpeilscKYHVAVAEAGELREQLKALhsthEAREAQLAEEKGRYEAEVQALTEKVSLLEKASHQDQELLAQLEKE 507
Cdd:COG1196 289 ------------EEYELLAELARLEQDIARL----EERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEE 352
|
170 180 190
....*....|....*....|....*....|...
gi 76008363 508 LRKVSDVAGETQGSLNVAQDELVTFSEELANLY 540
Cdd:COG1196 353 LEEAEAELAEAEEALLEAEAELAEAEEELEELA 385
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
22-261 |
4.19e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 40.82 E-value: 4.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 22 LRAEVKRLSHELA--ETTREKIQAAEYGLA-VLEEKHQLKLQFEELEVDYEAIRSEMEQLKEafgqahtnHKKVAADGES 98
Cdd:PRK03918 174 IKRRIERLEKFIKrtENIEELIKEKEKELEeVLREINEISSELPELREELEKLEKEVKELEE--------LKEEIEELEK 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 99 REESLIQESASkeqyyvrkvleLQTELKQLRNVLINTQSENERLTSVAQELKEINQNVE--IQRGRLRDDIKEYKFREAR 176
Cdd:PRK03918 246 ELESLEGSKRK-----------LEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEeyIKLSEFYEEYLDELREIEK 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 177 LLQDYSE----LEEENISLQKQVSVLRQNQVEFEGLKHEIKRLEEETEYLNSQLEDAIRLKEISERQLEEALETLKTERE 252
Cdd:PRK03918 315 RLSRLEEeingIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELE 394
|
....*....
gi 76008363 253 QKNNLRKEL 261
Cdd:PRK03918 395 ELEKAKEEI 403
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
16-198 |
4.58e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.82 E-value: 4.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 16 EAQPEWLRAEVKRLSHELAETTREKIQAAEYGLAVLEEKHQLKLQFEELEVDYEAIRSEMEQLKEAFGQAHTNHK--KVA 93
Cdd:TIGR02169 314 ERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKdyREK 393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 94 ADGESREESLIQESASKEQYYVRKVLELQTELKQLRNVLINTQSE-NERLTSVAQELKEINQNVEiqrgRLRDDIKEYKF 172
Cdd:TIGR02169 394 LEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINElEEEKEDKALEIKKQEWKLE----QLAADLSKYEQ 469
|
170 180
....*....|....*....|....*.
gi 76008363 173 REARLLQDYSELEEENISLQKQVSVL 198
Cdd:TIGR02169 470 ELYDLKEEYDRVEKELSKLQRELAEA 495
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
17-247 |
5.26e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.67 E-value: 5.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 17 AQPEWLRAEVKRLSHELAETtREKIQAAEYGLAVLEEkhqLKLQFEELEVDYEAIRSEMEQLKEAFGQAHTNHkkvaadg 96
Cdd:COG4913 654 AEYSWDEIDVASAEREIAEL-EAELERLDASSDDLAA---LEEQLEELEAELEELEEELDELKGEIGRLEKEL------- 722
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 97 ESREESLIQESASKEQYYVRKVLELQTELKQLRNVLINTQSENERLTSVAQELKEINQNVEIQRGRLRDDIKEYKFREAR 176
Cdd:COG4913 723 EQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRAFNREWPA 802
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 76008363 177 LLQDYSELEEENISLQKQVSVLRQN-----QVEFEGLKHEikRLEEETEYLNSQLEDAIRlkEISER--QLEEALETL 247
Cdd:COG4913 803 ETADLDADLESLPEYLALLDRLEEDglpeyEERFKELLNE--NSIEFVADLLSKLRRAIR--EIKERidPLNDSLKRI 876
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
49-259 |
5.74e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 40.30 E-value: 5.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 49 AVLEEKHQLKL-QFEEL--EVDYEAIRSEME----------QLKEAFGQAHTNHKKVAADGESREESLIQESASKEQYYV 115
Cdd:PRK05771 20 EVLEALHELGVvHIEDLkeELSNERLRKLRSlltklsealdKLRSYLPKLNPLREEKKKVSVKSLEELIKDVEEELEKIE 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 116 RKVLELQTELKQLRNVLINTQSENERL----------------TSVAQELKEINQNVEIQRGRLRDDIKEYKFREAR--- 176
Cdd:PRK05771 100 KEIKELEEEISELENEIKELEQEIERLepwgnfdldlslllgfKYVSVFVGTVPEDKLEELKLESDVENVEYISTDKgyv 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 177 --LLQDYSELEEENISLQKQVSVLRQNQVEFEGLKHEIKRLEEETEYLNSQLEDAI-RLKEISER------QLEEALETL 247
Cdd:PRK05771 180 yvVVVVLKELSDEVEEELKKLGFERLELEEEGTPSELIREIKEELEEIEKERESLLeELKELAKKyleellALYEYLEIE 259
|
250
....*....|..
gi 76008363 248 KTEREQKNNLRK 259
Cdd:PRK05771 260 LERAEALSKFLK 271
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
630-814 |
6.83e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 40.04 E-value: 6.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 630 IRDQIKHLQAA--VDRTTELSRQRIASQElgpavdkDKEALMEEILKLKSLLSTKREQITTLRTVLKANKQTAEVALANL 707
Cdd:TIGR02168 218 LKAELRELELAllVLRLEELREELEELQE-------ELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKEL 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76008363 708 KSKYeNEKAMVTETMMKLRNELKALKEDAATFSSLRAMFATRCDEYITQLDEMQRQLAAAEDEKKTLNSLLRMAIQQKLA 787
Cdd:TIGR02168 291 YALA-NEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEE 369
|
170 180
....*....|....*....|....*..
gi 76008363 788 LTQRLELLELDHEQTRRGRNKATSKAK 814
Cdd:TIGR02168 370 LESRLEELEEQLETLRSKVAQLELQIA 396
|
|
|