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Conserved domains on  [gi|122937341|ref|NP_001073943|]
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uncharacterized protein C2orf78 [Homo sapiens]

Protein Classification

DUF4629 domain-containing protein( domain architecture ID 10634223)

DUF4629 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4629 pfam15442
Domain of unknown function (DUF4629); This domain family is found in eukaryotes, and is ...
 495-643 7.06e-75

Domain of unknown function (DUF4629); This domain family is found in eukaryotes, and is approximately 150 amino acids in length. There are two conserved sequence motifs: MHML and LGKK.


:

Pssm-ID: 434721 [Multi-domain]  Cd Length: 150  Bit Score: 241.90  E-value: 7.06e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122937341  495 HSDQVRKNKHKASEPIQGAPKAKIQPKNPECLLEREVVVGSATVSNSASVNKAKHSSNKPHKAASSRISKTKSHGQEKTK 574
Cdd:pfam15442   1 PSDQVRKNKHKASELIDGAPQAKIQPKDPECLLEGEVVVSSAAASDRAPVNMAKHSSSKAQKAASSRSSKTKGHGQEKTK 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 122937341  575 GNRKNSSKKSEESKQSGKKVKVEEKQTIPNMKRKKNQPELSQKTLKKPRSSLGMHMLESVQVFHALGKK 643
Cdd:pfam15442  81 RTRENNSKKAEEKKQSGNKVKAEEKPTIPKMKRKKNPPELSQESFKKPRSHLGMHMLESVQVFHALGKK 149
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 711-881 1.27e-06

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 52.63  E-value: 1.27e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122937341  711 PPPGKVKLIPLPFLTLDQPQArhVSRRPNPLASRRPAVAYPARPDSTNSAQSNAVNPSRPAPTNTS-LTGPATPAQPISA 789
Cdd:PHA03247 2742 PAVPAGPATPGGPARPARPPT--TAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPAdPPAAVLAPAAALP 2819

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122937341  790 KATQPSSANPTQPTVPQSAASRPSAYKTSS---CSSL-----------QREPVSTAVTS----LRSLPKPQNQFLIQDFS 851
Cdd:PHA03247 2820 PAASPAGPLPPPTSAQPTAPPPPPGPPPPSlplGGSVapggdvrrrppSRSPAAKPAAParppVRRLARPAVSRSTESFA 2899

                         170       180       190
                  ....*....|....*....|....*....|...
gi 122937341  852 L---QPRPWRKPTVPEPVMSTPitEEQRPEREA 881
Cdd:PHA03247 2900 LppdQPERPPQPQAPPPPQPQP--QPPPPPQPQ 2930
 
Name Accession Description Interval E-value
DUF4629 pfam15442
Domain of unknown function (DUF4629); This domain family is found in eukaryotes, and is ...
 495-643 7.06e-75

Domain of unknown function (DUF4629); This domain family is found in eukaryotes, and is approximately 150 amino acids in length. There are two conserved sequence motifs: MHML and LGKK.


Pssm-ID: 434721 [Multi-domain]  Cd Length: 150  Bit Score: 241.90  E-value: 7.06e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122937341  495 HSDQVRKNKHKASEPIQGAPKAKIQPKNPECLLEREVVVGSATVSNSASVNKAKHSSNKPHKAASSRISKTKSHGQEKTK 574
Cdd:pfam15442   1 PSDQVRKNKHKASELIDGAPQAKIQPKDPECLLEGEVVVSSAAASDRAPVNMAKHSSSKAQKAASSRSSKTKGHGQEKTK 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 122937341  575 GNRKNSSKKSEESKQSGKKVKVEEKQTIPNMKRKKNQPELSQKTLKKPRSSLGMHMLESVQVFHALGKK 643
Cdd:pfam15442  81 RTRENNSKKAEEKKQSGNKVKAEEKPTIPKMKRKKNPPELSQESFKKPRSHLGMHMLESVQVFHALGKK 149
PHA03247 PHA03247
large tegument protein UL36; Provisional
 711-881 1.27e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 52.63  E-value: 1.27e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122937341  711 PPPGKVKLIPLPFLTLDQPQArhVSRRPNPLASRRPAVAYPARPDSTNSAQSNAVNPSRPAPTNTS-LTGPATPAQPISA 789
Cdd:PHA03247 2742 PAVPAGPATPGGPARPARPPT--TAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPAdPPAAVLAPAAALP 2819

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122937341  790 KATQPSSANPTQPTVPQSAASRPSAYKTSS---CSSL-----------QREPVSTAVTS----LRSLPKPQNQFLIQDFS 851
Cdd:PHA03247 2820 PAASPAGPLPPPTSAQPTAPPPPPGPPPPSlplGGSVapggdvrrrppSRSPAAKPAAParppVRRLARPAVSRSTESFA 2899

                         170       180       190
                  ....*....|....*....|....*....|...
gi 122937341  852 L---QPRPWRKPTVPEPVMSTPitEEQRPEREA 881
Cdd:PHA03247 2900 LppdQPERPPQPQAPPPPQPQP--QPPPPPQPQ 2930
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 704-878 3.03e-03

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 41.44  E-value: 3.03e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122937341  704 SPSHSELPPPGKVKLIPLPFLTLDQPQARHVSRRPNPLASRRPAVAYPARPDSTNSAQSNAVNPSRPAPT---NTSLTGP 780
Cdd:pfam05109 424 APESTTTSPTLNTTGFAAPNTTTGLPSSTHVPTNLTAPASTGPTVSTADVTSPTPAGTTSGASPVTPSPSprdNGTESKA 503

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122937341  781 ATPAQPISAKAT-QPSSANPTQP-TVPQSAASRPSAYKTSSCSSLQrEPVSTAVTSLRSLPKPQNQFLIQDFSlQPRPWR 858
Cdd:pfam05109 504 PDMTSPTSAVTTpTPNATSPTPAvTTPTPNATSPTLGKTSPTSAVT-TPTPNATSPTPAVTTPTPNATIPTLG-KTSPTS 581

                         170       180
                  ....*....|....*....|
gi 122937341  859 KPTVPEPVMSTPITEEQRPE 878
Cdd:pfam05109 582 AVTTPTPNATSPTVGETSPQ 601
 
Name Accession Description Interval E-value
DUF4629 pfam15442
Domain of unknown function (DUF4629); This domain family is found in eukaryotes, and is ...
 495-643 7.06e-75

Domain of unknown function (DUF4629); This domain family is found in eukaryotes, and is approximately 150 amino acids in length. There are two conserved sequence motifs: MHML and LGKK.


Pssm-ID: 434721 [Multi-domain]  Cd Length: 150  Bit Score: 241.90  E-value: 7.06e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122937341  495 HSDQVRKNKHKASEPIQGAPKAKIQPKNPECLLEREVVVGSATVSNSASVNKAKHSSNKPHKAASSRISKTKSHGQEKTK 574
Cdd:pfam15442   1 PSDQVRKNKHKASELIDGAPQAKIQPKDPECLLEGEVVVSSAAASDRAPVNMAKHSSSKAQKAASSRSSKTKGHGQEKTK 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 122937341  575 GNRKNSSKKSEESKQSGKKVKVEEKQTIPNMKRKKNQPELSQKTLKKPRSSLGMHMLESVQVFHALGKK 643
Cdd:pfam15442  81 RTRENNSKKAEEKKQSGNKVKAEEKPTIPKMKRKKNPPELSQESFKKPRSHLGMHMLESVQVFHALGKK 149
PHA03247 PHA03247
large tegument protein UL36; Provisional
 711-881 1.27e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 52.63  E-value: 1.27e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122937341  711 PPPGKVKLIPLPFLTLDQPQArhVSRRPNPLASRRPAVAYPARPDSTNSAQSNAVNPSRPAPTNTS-LTGPATPAQPISA 789
Cdd:PHA03247 2742 PAVPAGPATPGGPARPARPPT--TAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPAdPPAAVLAPAAALP 2819

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122937341  790 KATQPSSANPTQPTVPQSAASRPSAYKTSS---CSSL-----------QREPVSTAVTS----LRSLPKPQNQFLIQDFS 851
Cdd:PHA03247 2820 PAASPAGPLPPPTSAQPTAPPPPPGPPPPSlplGGSVapggdvrrrppSRSPAAKPAAParppVRRLARPAVSRSTESFA 2899

                         170       180       190
                  ....*....|....*....|....*....|...
gi 122937341  852 L---QPRPWRKPTVPEPVMSTPitEEQRPEREA 881
Cdd:PHA03247 2900 LppdQPERPPQPQAPPPPQPQP--QPPPPPQPQ 2930
PHA03247 PHA03247
large tegument protein UL36; Provisional
 697-870 8.36e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 49.94  E-value: 8.36e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122937341  697 SAEKECTSPSHSELPPPGKVKLIPL-------PFLTLDQPQAR--HVSRRP-------NPLASRRPAVAYPARPDSTNSA 760
Cdd:PHA03247 2816 AALPPAASPAGPLPPPTSAQPTAPPpppgpppPSLPLGGSVAPggDVRRRPpsrspaaKPAAPARPPVRRLARPAVSRST 2895

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122937341  761 QSNAVNPSRPAPTNTsltgPATPAQPISaKATQPSSANPTQPTVPQSAASRPSAYKTSSCSSLQREPVstavtslrsLPK 840
Cdd:PHA03247 2896 ESFALPPDQPERPPQ----PQAPPPPQP-QPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGA---------VPQ 2961

                         170       180       190
                  ....*....|....*....|....*....|...
gi 122937341  841 PQNQFLIQDFSLQPR---PWRKPTVPEPVMSTP 870
Cdd:PHA03247 2962 PWLGALVPGRVAVPRfrvPQPAPSREAPASSTP 2994
PHA03247 PHA03247
large tegument protein UL36; Provisional
 662-877 1.05e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 49.55  E-value: 1.05e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122937341  662 TQNRQPFPALKPWLDIQHEGKGPEKIQVKAQKLDGSAEKECTSPSHSELPPPGKVKLIPLPFLTLDQPQARHVSRRPNPL 741
Cdd:PHA03247 2636 NEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHAL 2715

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122937341  742 ASRRPAVAYPARPDSTNSAQSNAvnPSRPAPTNTSLT--GPATPAQPiSAKATQPSSANPTQP-TVPQSAASRPsaykts 818
Cdd:PHA03247 2716 VSATPLPPGPAAARQASPALPAA--PAPPAVPAGPATpgGPARPARP-PTTAGPPAPAPPAAPaAGPPRRLTRP------ 2786

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 122937341  819 scsslqrePVSTAVTSLRSLPKPqnqfliQDFSLQPRPWRKPTVPEPVMSTPITEEQRP 877
Cdd:PHA03247 2787 --------AVASLSESRESLPSP------WDPADPPAAVLAPAAALPPAASPAGPLPPP 2831
PHA03247 PHA03247
large tegument protein UL36; Provisional
 705-894 2.94e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 48.40  E-value: 2.94e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122937341  705 PSHSELPPPGKVKLIPLPFltldQPQARHVSRRPNPLASRRPAVAY-PARPDSTNSAQSNAV--NPSRPAPTNTSLTGP- 780
Cdd:PHA03247 2705 PPTPEPAPHALVSATPLPP----GPAAARQASPALPAAPAPPAVPAgPATPGGPARPARPPTtaGPPAPAPPAAPAAGPp 2780

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122937341  781 --ATPAQPISAKATQPSSANPTQPTVPQSAASRPSAYKTSSCSSLQREPVSTAV--TSLRSLPKPQNQFLIQDFSLQP-R 855
Cdd:PHA03247 2781 rrLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAqpTAPPPPPGPPPPSLPLGGSVAPgG 2860

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 122937341  856 PWRKPTVPEPVMSTPITEEQRPEREAMKRKAQQERENAA 894
Cdd:PHA03247 2861 DVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFA 2899
PHA03247 PHA03247
large tegument protein UL36; Provisional
 705-877 5.24e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 44.16  E-value: 5.24e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122937341  705 PSHSELPPPGKvkliPLPFLTLDQPQARHVSRR------------------PNPLAsrrPAVAYPARPDSTNSAQSNAVN 766
Cdd:PHA03247 2504 PDPDAPPAPSR----LAPAILPDEPVGEPVHPRmltwirgleelasddagdPPPPL---PPAAPPAAPDRSVPPPRPAPR 2576

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122937341  767 PSRPAPTNTSlTGPATPAQPISAKA-----------TQPSSANPTQ------PTVPQSAASRPSAYKTSSCSSLQREPVS 829
Cdd:PHA03247 2577 PSEPAVTSRA-RRPDAPPQSARPRApvddrgdprgpAPPSPLPPDThapdppPPSPSPAANEPDPHPPPTVPPPERPRDD 2655

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 122937341  830 TAVTSLRSLPKPQNQFLIQDFSLQPRPWRKPTVPEPVmsTPITEEQRP 877
Cdd:PHA03247 2656 PAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTV--GSLTSLADP 2701
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 746-877 1.02e-03

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 43.15  E-value: 1.02e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122937341  746 PAVAYPARPDSTNSAQSNAVNPSRPAPTNTSLTGPATPA-------QPISAKATQPSSANPTQPTVPQSAASRPSAYKTS 818
Cdd:PRK10263  747 PIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVapqpqyqQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAP 826

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 122937341  819 SCSSLQREPvstavtslRSLPKPQNQfLIQDFSLQ---PRPWRKPTVPEPVMS--TPITEEQRP 877
Cdd:PRK10263  827 QPQYQQPQQ--------PVAPQPQDT-LLHPLLMRngdSRPLHKPTTPLPSLDllTPPPSEVEP 881
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
738-842 1.06e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 42.91  E-value: 1.06e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122937341 738 PNPLASRRPAVAYPARPDSTNSAQSNAVNPS-----RPAPTNTSLTGPATPAQPISAKATQPSSANPTQPTVPQSAASrP 812
Cdd:PRK07003 417 AAAATRAEAPPAAPAPPATADRGDDAADGDApvpakANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAP-R 495

                         90       100       110
                 ....*....|....*....|....*....|
gi 122937341 813 SAYKTSSCSSLQREPVSTAVTSLRSLPKPQ 842
Cdd:PRK07003 496 AAAPSAATPAAVPDARAPAAASREDAPAAA 525
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
716-898 1.77e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 42.07  E-value: 1.77e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122937341 716 VKLIPLPFLTLDQPQARHVSRRPNPLASRrPAVAY--PARPDSTNSAQSNAVNPSRPAPTntsltgPATPAQPisakATQ 793
Cdd:PRK14971 357 IQLAQLTQKGDDASGGRGPKQHIKPVFTQ-PAAAPqpSAAAAASPSPSQSSAAAQPSAPQ------SATQPAG----TPP 425

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122937341 794 PSSANPT--QPTVPQSAAsrPSAYKTSSCSSLQREPVSTAVTSLRSLPKPQNQfliqdfslqprPWRKPTVPEPVMSTPI 871
Cdd:PRK14971 426 TVSVDPPaaVPVNPPSTA--PQAVRPAQFKEEKKIPVSKVSSLGPSTLRPIQE-----------KAEQATGNIKEAPTGT 492

                        170       180       190
                 ....*....|....*....|....*....|....
gi 122937341 872 TEE-------QRPEREAMKRKAQQERENAAKYTS 898
Cdd:PRK14971 493 QKEifteedlQYYWQEFAGTRPQEEKALKETMIN 526
PTZ00395 PTZ00395
Sec24-related protein; Provisional
 754-898 2.36e-03

Sec24-related protein; Provisional


Pssm-ID: 185594 [Multi-domain]  Cd Length: 1560  Bit Score: 41.98  E-value: 2.36e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122937341  754 PDSTNSAQSNAVNP----SRPAPTNTSLTGPATPAQPIS-AKATQPSSANPTQPTVPQSAAS-RPSAYKTSSCSSLQREP 827
Cdd:PTZ00395  417 PGNSNPGYNNAPNSntpyNNPPNSNTPYSNPPNSNPPYSnLPYSNTPYSNAPLSNAPPSSAKdHHSAYHAAYQHRAANQP 496

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122937341  828 VSTAVTSLRSLPKP---------QNQFLIQDFSLQPRPWRKPTVPEPVMSTpiTEEQRPEREAMKRKAQQERENAAKYTS 898
Cdd:PTZ00395  497 AANLPTANQPAANNfhgaagnsvGNPFASRPFGSAPYGGNAATTADPNGIA--KREDHPEGGTNRQKYEQSDEESVESSS 574
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 704-878 3.03e-03

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 41.44  E-value: 3.03e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122937341  704 SPSHSELPPPGKVKLIPLPFLTLDQPQARHVSRRPNPLASRRPAVAYPARPDSTNSAQSNAVNPSRPAPT---NTSLTGP 780
Cdd:pfam05109 424 APESTTTSPTLNTTGFAAPNTTTGLPSSTHVPTNLTAPASTGPTVSTADVTSPTPAGTTSGASPVTPSPSprdNGTESKA 503

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122937341  781 ATPAQPISAKAT-QPSSANPTQP-TVPQSAASRPSAYKTSSCSSLQrEPVSTAVTSLRSLPKPQNQFLIQDFSlQPRPWR 858
Cdd:pfam05109 504 PDMTSPTSAVTTpTPNATSPTPAvTTPTPNATSPTLGKTSPTSAVT-TPTPNATSPTPAVTTPTPNATIPTLG-KTSPTS 581

                         170       180
                  ....*....|....*....|
gi 122937341  859 KPTVPEPVMSTPITEEQRPE 878
Cdd:pfam05109 582 AVTTPTPNATSPTVGETSPQ 601
PLN03209 PLN03209
translocon at the inner envelope of chloroplast subunit 62; Provisional
 682-895 4.29e-03

translocon at the inner envelope of chloroplast subunit 62; Provisional


Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 40.68  E-value: 4.29e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122937341 682 KGPEKIQVKaqkldgSAEKECTSPSHSELPPPGK-VKLIPLpfltldQPQARHVSRRPNPLASRRPAVAYPARPDSTNSA 760
Cdd:PLN03209 337 DGPKPVPTK------PVTPEAPSPPIEEEPPQPKaVVPRPL------SPYTAYEDLKPPTSPIPTPPSSSPASSKSVDAV 404

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122937341 761 QSNAVNPSRPAPTNTSlTGPATPAQPISAKATQPSS--------ANPTQPTVPQSAASRPSAYKTSSCSSLQREPVSTAV 832
Cdd:PLN03209 405 AKPAEPDVVPSPGSAS-NVPEVEPAQVEAKKTRPLSpyaryedlKPPTSPSPTAPTGVSPSVSSTSSVPAVPDTAPATAA 483

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 122937341 833 TSLR----SLPKPQNQFLIQDfSLQPRPWRKPTVPEPVMSTPITEEQRPEREAMKRKAQQERENAAK 895
Cdd:PLN03209 484 TDAAapppANMRPLSPYAVYD-DLKPPTSPSPAAPVGKVAPSSTNEVVKVGNSAPPTALADEQHHAQ 549
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
711-900 4.33e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 41.01  E-value: 4.33e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122937341 711 PPPGKVKLIPLPFLTLDQPQARHVSR-RPNPLASRRPAVAYPARPDSTNSAQSNAVNPSRPAPTNTSLTGPATPAQPISA 789
Cdd:PRK12323 374 PATAAAAPVAQPAPAAAAPAAAAPAPaAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPA 453

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122937341 790 KATQPSSANPTQPTVPQSAASRPSAYKTSSCSSLQREPVSTAVTSLRSLPKPQNQFLIQDFSLQPRPWRKPTVPEPVMST 869
Cdd:PRK12323 454 PAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATAD 533

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 122937341 870 PITE-----EQRPEREAMKRKAQQERENAAKYTSLG 900
Cdd:PRK12323 534 PDDAfetlaPAPAAAPAPRAAAATEPVVAPRPPRAS 569
PHA02682 PHA02682
ORF080 virion core protein; Provisional
 709-879 4.34e-03

ORF080 virion core protein; Provisional


Pssm-ID: 177464 [Multi-domain]  Cd Length: 280  Bit Score: 40.23  E-value: 4.34e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122937341 709 ELPPPGKVKLIPLPFLTLDQPQARHVSR-RPNPLASRRPAVAYPARPdstnsaqsnavNPSRPAP-TNTSLTGPATPAQP 786
Cdd:PHA02682  38 AAPCPPDADVDPLDKYSVKEAGRYYQSRlKANSACMQRPSGQSPLAP-----------SPACAAPaPACPACAPAAPAPA 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122937341 787 ISAKATQPSSANPTQPTVPQSAASRPSAYKTSSCSSLQRE-PVSTAVTSLRSLPKPQNQFLIQDFSLQPRPWRK-PTVPE 864
Cdd:PHA02682 107 VTCPAPAPACPPATAPTCPPPAVCPAPARPAPACPPSTRQcPPAPPLPTPKPAPAAKPIFLHNQLPPPDYPAAScPTIET 186

                        170
                 ....*....|....*
gi 122937341 865 PVMSTPITEEQRPER 879
Cdd:PHA02682 187 APAASPVLEPRIPDK 201
PHA03379 PHA03379
EBNA-3A; Provisional
 711-863 5.68e-03

EBNA-3A; Provisional


Pssm-ID: 223066 [Multi-domain]  Cd Length: 935  Bit Score: 40.43  E-value: 5.68e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122937341 711 PPPGKVKLIPLPFLtldqpqARHVSRRPNPLASRRPAVAY-PARPDSTNSA-----QSNAVNPSRPAPTNTSLTGPATPA 784
Cdd:PHA03379 488 VQDGRPACAPVPAP------AGPIVRPWEASLSQVPGVAFaPVMPQPMPVEpvpvpTVALERPVCPAPPLIAMQGPGETS 561

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122937341 785 QPISAK---ATQPSSANPTQPTVPQS-----AASRPSAYKTSSCSSLQREPVSTAVTSL---RSLPKPQNQFLIQDFSLQ 853
Cdd:PHA03379 562 GIVRVRerwRPAPWTPNPPRSPSQMSvrdrlARLRAEAQPYQASVEVQPPQLTQVSPQQpmeYPLEPEQQMFPGSPFSQV 641

                        170
                 ....*....|
gi 122937341 854 PRPWRKPTVP 863
Cdd:PHA03379 642 ADVMRAGGVP 651
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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