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Conserved domains on  [gi|124301182|ref|NP_001074411|]
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binder of sperm protein homolog 2 precursor [Mus musculus]

Protein Classification

FN2 domain-containing protein( domain architecture ID 10294336)

FN2 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
fn2 pfam00040
Fibronectin type II domain;
85-126 1.92e-14

Fibronectin type II domain;


:

Pssm-ID: 459645  Cd Length: 42  Bit Score: 62.59  E-value: 1.92e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 124301182   85 CIFPFQFKQKLIKKCTKEGYILNRSWCSLTENYNQDGKWKQC 126
Cdd:pfam00040   1 CVFPFKYKGKWYHTCTTDGRRSGRLWCATTANYDGDGKWGYC 42
FN2 super family cl09951
Fibronectin Type II domain: FN2 is one of three types of internal repeats which combine to ...
 40-77 5.88e-06

Fibronectin Type II domain: FN2 is one of three types of internal repeats which combine to form larger domains within fibronectin. Fibronectin, a plasma protein that binds cell surfaces and various compounds including collagen, fibrin, heparin, DNA, and actin, usually exists as a dimer in plasma and as an insoluble multimer in extracellular matrices. Dimers of nearly identical subunits are linked by a disulfide bond close to their C-terminus. Fibronectin is composed of 3 types of modules, FN1,FN2 and FN3. The collagen binding domain contains four FN1 and two FN2 repeats.


The actual alignment was detected with superfamily member smart00059:

Pssm-ID: 471955  Cd Length: 49  Bit Score: 40.75  E-value: 5.88e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 124301182    40 CVFPFVYADGFHYSCISLHSDYD--WCSL--DFQFQGRWRYC 77
Cdd:smart00059   8 CVFPFIYNGKKYHDCTSEGRSDGmlWCSTtpNYDRDGKWGFC 49
 
Name Accession Description Interval E-value
fn2 pfam00040
Fibronectin type II domain;
85-126 1.92e-14

Fibronectin type II domain;


Pssm-ID: 459645  Cd Length: 42  Bit Score: 62.59  E-value: 1.92e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 124301182   85 CIFPFQFKQKLIKKCTKEGYILNRSWCSLTENYNQDGKWKQC 126
Cdd:pfam00040   1 CVFPFKYKGKWYHTCTTDGRRSGRLWCATTANYDGDGKWGYC 42
FN2 cd00062
Fibronectin Type II domain: FN2 is one of three types of internal repeats which combine to ...
 83-126 1.44e-13

Fibronectin Type II domain: FN2 is one of three types of internal repeats which combine to form larger domains within fibronectin. Fibronectin, a plasma protein that binds cell surfaces and various compounds including collagen, fibrin, heparin, DNA, and actin, usually exists as a dimer in plasma and as an insoluble multimer in extracellular matrices. Dimers of nearly identical subunits are linked by a disulfide bond close to their C-terminus. Fibronectin is composed of 3 types of modules, FN1,FN2 and FN3. The collagen binding domain contains four FN1 and two FN2 repeats.


Pssm-ID: 238019  Cd Length: 48  Bit Score: 60.40  E-value: 1.44e-13
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 124301182  83 PKCIFPFQFKQKLIKKCTKEGYILNRSWCSLTENYNQDGKWKQC 126
Cdd:cd00062    5 APCVFPFIYRGKWYHDCTTEGSNDGKLWCSTTPNYDRDGKWGYC 48
FN2 smart00059
Fibronectin type 2 domain; One of three types of internal repeat within the plasma protein, ...
 81-126 1.61e-12

Fibronectin type 2 domain; One of three types of internal repeat within the plasma protein, fibronectin. Also occurs in coagulation factor XII, 2 type IV collagenases, PDC-109, and cation-independent mannose-6-phosphate and secretory phospholipase A2 receptors. In fibronectin, PDC-109, and the collagenases, this domain contributes to collagen-binding function.


Pssm-ID: 128373  Cd Length: 49  Bit Score: 57.69  E-value: 1.61e-12
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 124301182    81 DPPKCIFPFQFKQKLIKKCTKEGYILNRSWCSLTENYNQDGKWKQC 126
Cdd:smart00059   4 DGEPCVFPFIYNGKKYHDCTSEGRSDGMLWCSTTPNYDRDGKWGFC 49
FN2 smart00059
Fibronectin type 2 domain; One of three types of internal repeat within the plasma protein, ...
 40-77 5.88e-06

Fibronectin type 2 domain; One of three types of internal repeat within the plasma protein, fibronectin. Also occurs in coagulation factor XII, 2 type IV collagenases, PDC-109, and cation-independent mannose-6-phosphate and secretory phospholipase A2 receptors. In fibronectin, PDC-109, and the collagenases, this domain contributes to collagen-binding function.


Pssm-ID: 128373  Cd Length: 49  Bit Score: 40.75  E-value: 5.88e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 124301182    40 CVFPFVYADGFHYSCISLHSDYD--WCSL--DFQFQGRWRYC 77
Cdd:smart00059   8 CVFPFIYNGKKYHDCTSEGRSDGmlWCSTtpNYDRDGKWGFC 49
 
Name Accession Description Interval E-value
fn2 pfam00040
Fibronectin type II domain;
85-126 1.92e-14

Fibronectin type II domain;


Pssm-ID: 459645  Cd Length: 42  Bit Score: 62.59  E-value: 1.92e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 124301182   85 CIFPFQFKQKLIKKCTKEGYILNRSWCSLTENYNQDGKWKQC 126
Cdd:pfam00040   1 CVFPFKYKGKWYHTCTTDGRRSGRLWCATTANYDGDGKWGYC 42
FN2 cd00062
Fibronectin Type II domain: FN2 is one of three types of internal repeats which combine to ...
 83-126 1.44e-13

Fibronectin Type II domain: FN2 is one of three types of internal repeats which combine to form larger domains within fibronectin. Fibronectin, a plasma protein that binds cell surfaces and various compounds including collagen, fibrin, heparin, DNA, and actin, usually exists as a dimer in plasma and as an insoluble multimer in extracellular matrices. Dimers of nearly identical subunits are linked by a disulfide bond close to their C-terminus. Fibronectin is composed of 3 types of modules, FN1,FN2 and FN3. The collagen binding domain contains four FN1 and two FN2 repeats.


Pssm-ID: 238019  Cd Length: 48  Bit Score: 60.40  E-value: 1.44e-13
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 124301182  83 PKCIFPFQFKQKLIKKCTKEGYILNRSWCSLTENYNQDGKWKQC 126
Cdd:cd00062    5 APCVFPFIYRGKWYHDCTTEGSNDGKLWCSTTPNYDRDGKWGYC 48
FN2 smart00059
Fibronectin type 2 domain; One of three types of internal repeat within the plasma protein, ...
 81-126 1.61e-12

Fibronectin type 2 domain; One of three types of internal repeat within the plasma protein, fibronectin. Also occurs in coagulation factor XII, 2 type IV collagenases, PDC-109, and cation-independent mannose-6-phosphate and secretory phospholipase A2 receptors. In fibronectin, PDC-109, and the collagenases, this domain contributes to collagen-binding function.


Pssm-ID: 128373  Cd Length: 49  Bit Score: 57.69  E-value: 1.61e-12
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 124301182    81 DPPKCIFPFQFKQKLIKKCTKEGYILNRSWCSLTENYNQDGKWKQC 126
Cdd:smart00059   4 DGEPCVFPFIYNGKKYHDCTSEGRSDGMLWCSTTPNYDRDGKWGFC 49
FN2 smart00059
Fibronectin type 2 domain; One of three types of internal repeat within the plasma protein, ...
 40-77 5.88e-06

Fibronectin type 2 domain; One of three types of internal repeat within the plasma protein, fibronectin. Also occurs in coagulation factor XII, 2 type IV collagenases, PDC-109, and cation-independent mannose-6-phosphate and secretory phospholipase A2 receptors. In fibronectin, PDC-109, and the collagenases, this domain contributes to collagen-binding function.


Pssm-ID: 128373  Cd Length: 49  Bit Score: 40.75  E-value: 5.88e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 124301182    40 CVFPFVYADGFHYSCISLHSDYD--WCSL--DFQFQGRWRYC 77
Cdd:smart00059   8 CVFPFIYNGKKYHDCTSEGRSDGmlWCSTtpNYDRDGKWGFC 49
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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