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Conserved domains on  [gi|146149270|ref|NP_001078890|]
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testis-specific Y-encoded-like protein 5 [Mus musculus]

Protein Classification

NAP domain-containing protein( domain architecture ID 1637)

NAP domain-containing protein similar to Homo sapiens protein testis-specific Y-encoded protein and nucleosome assembly protein 1-like

CATH:  3.30.1120.90
Gene Ontology:  GO:0042393|GO:0003682|GO:0006334
PubMed:  16936827
SCOP:  4003454

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PTZ00007 super family cl08298
(NAP-L) nucleosome assembly protein -L; Provisional
203-381 6.91e-20

(NAP-L) nucleosome assembly protein -L; Provisional


The actual alignment was detected with superfamily member PTZ00008:

Pssm-ID: 471807  Cd Length: 185  Bit Score: 86.41  E-value: 6.91e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146149270 203 QLKLETMNAQadrayLRLSRKFGQLRLHHLERRNLLIQSIPGFWGQAFQNHPQLSaFLNTKDKEVLSYLNRLEVEElGLA 282
Cdd:PTZ00008   2 ELDEECAKEQ-----MNIQRQFDEKKKPLFEKRQEIIEKIPGFWADTLRRHPALS-YLVPEDIDILEHLKKIDLED-NLD 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146149270 283 RLG-YKIKFYFGR--NPYFQNKVLIKEYGCGPSGQVVSRSAPIQWLPGHD-----LQSLSKENPEN-NGSFFGWFSNHSS 353
Cdd:PTZ00008  75 NNGsYKITLIFDEkaKEFMEPLVLVKHVIFKNNQEKVVEVTKIKWKEGKSpiaaaEKARSDLDDECiVWSIFEWFTEEEW 154
                        170       180
                 ....*....|....*....|....*...
gi 146149270 354 IESDKIVEIINEDLWPNPLQYYLISEEA 381
Cdd:PTZ00008 155 QDRPDVGEIIRREIWHAPLLYYLDTVSI 182
 
Name Accession Description Interval E-value
PTZ00008 PTZ00008
(NAP-S) nucleosome assembly protein-S; Provisional
203-381 6.91e-20

(NAP-S) nucleosome assembly protein-S; Provisional


Pssm-ID: 185394  Cd Length: 185  Bit Score: 86.41  E-value: 6.91e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146149270 203 QLKLETMNAQadrayLRLSRKFGQLRLHHLERRNLLIQSIPGFWGQAFQNHPQLSaFLNTKDKEVLSYLNRLEVEElGLA 282
Cdd:PTZ00008   2 ELDEECAKEQ-----MNIQRQFDEKKKPLFEKRQEIIEKIPGFWADTLRRHPALS-YLVPEDIDILEHLKKIDLED-NLD 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146149270 283 RLG-YKIKFYFGR--NPYFQNKVLIKEYGCGPSGQVVSRSAPIQWLPGHD-----LQSLSKENPEN-NGSFFGWFSNHSS 353
Cdd:PTZ00008  75 NNGsYKITLIFDEkaKEFMEPLVLVKHVIFKNNQEKVVEVTKIKWKEGKSpiaaaEKARSDLDDECiVWSIFEWFTEEEW 154
                        170       180
                 ....*....|....*....|....*...
gi 146149270 354 IESDKIVEIINEDLWPNPLQYYLISEEA 381
Cdd:PTZ00008 155 QDRPDVGEIIRREIWHAPLLYYLDTVSI 182
NAP pfam00956
Nucleosome assembly protein (NAP); NAP proteins are involved in moving histones into the ...
217-367 1.79e-18

Nucleosome assembly protein (NAP); NAP proteins are involved in moving histones into the nucleus, nucleosome assembly and chromatin fluidity. They affect the transcription of many genes.


Pssm-ID: 460010  Cd Length: 203  Bit Score: 82.99  E-value: 1.79e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146149270  217 YLRLSRKFgQLRLHHLERR-NLLIQSIpgfwgqaFQNHPQLSAFLNTKDKEVLSYLNRLEVEELgLARLGYKIKFYFGRN 295
Cdd:pfam00956  13 HEKLEAEF-QEEVHELEKKyAALYQPL-------YKNLPLLSEMITERDEPALKHLKDIKIEYP-LDEPGFTLEFHFAPN 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146149270  296 PYFQNKVLIKEY--GCGPSGQVVSRSA--PIQWLPGHDL---------------QSLSKENPENNGSFFGWFSNHSSIES 356
Cdd:pfam00956  84 PYFTNTVLTKTYyyQDEPDGPEIIKAEgtEIDWKEGKNVtvktvkkkqrnkgtgQTRTVTKTVPTESFFNFFSPPEVPED 163
                         170
                  ....*....|.
gi 146149270  357 DKIVEIINEDL 367
Cdd:pfam00956 164 EDEDDEEDEEL 174
 
Name Accession Description Interval E-value
PTZ00008 PTZ00008
(NAP-S) nucleosome assembly protein-S; Provisional
203-381 6.91e-20

(NAP-S) nucleosome assembly protein-S; Provisional


Pssm-ID: 185394  Cd Length: 185  Bit Score: 86.41  E-value: 6.91e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146149270 203 QLKLETMNAQadrayLRLSRKFGQLRLHHLERRNLLIQSIPGFWGQAFQNHPQLSaFLNTKDKEVLSYLNRLEVEElGLA 282
Cdd:PTZ00008   2 ELDEECAKEQ-----MNIQRQFDEKKKPLFEKRQEIIEKIPGFWADTLRRHPALS-YLVPEDIDILEHLKKIDLED-NLD 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146149270 283 RLG-YKIKFYFGR--NPYFQNKVLIKEYGCGPSGQVVSRSAPIQWLPGHD-----LQSLSKENPEN-NGSFFGWFSNHSS 353
Cdd:PTZ00008  75 NNGsYKITLIFDEkaKEFMEPLVLVKHVIFKNNQEKVVEVTKIKWKEGKSpiaaaEKARSDLDDECiVWSIFEWFTEEEW 154
                        170       180
                 ....*....|....*....|....*...
gi 146149270 354 IESDKIVEIINEDLWPNPLQYYLISEEA 381
Cdd:PTZ00008 155 QDRPDVGEIIRREIWHAPLLYYLDTVSI 182
NAP pfam00956
Nucleosome assembly protein (NAP); NAP proteins are involved in moving histones into the ...
217-367 1.79e-18

Nucleosome assembly protein (NAP); NAP proteins are involved in moving histones into the nucleus, nucleosome assembly and chromatin fluidity. They affect the transcription of many genes.


Pssm-ID: 460010  Cd Length: 203  Bit Score: 82.99  E-value: 1.79e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146149270  217 YLRLSRKFgQLRLHHLERR-NLLIQSIpgfwgqaFQNHPQLSAFLNTKDKEVLSYLNRLEVEELgLARLGYKIKFYFGRN 295
Cdd:pfam00956  13 HEKLEAEF-QEEVHELEKKyAALYQPL-------YKNLPLLSEMITERDEPALKHLKDIKIEYP-LDEPGFTLEFHFAPN 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146149270  296 PYFQNKVLIKEY--GCGPSGQVVSRSA--PIQWLPGHDL---------------QSLSKENPENNGSFFGWFSNHSSIES 356
Cdd:pfam00956  84 PYFTNTVLTKTYyyQDEPDGPEIIKAEgtEIDWKEGKNVtvktvkkkqrnkgtgQTRTVTKTVPTESFFNFFSPPEVPED 163
                         170
                  ....*....|.
gi 146149270  357 DKIVEIINEDL 367
Cdd:pfam00956 164 EDEDDEEDEEL 174
PTZ00007 PTZ00007
(NAP-L) nucleosome assembly protein -L; Provisional
155-359 5.90e-14

(NAP-L) nucleosome assembly protein -L; Provisional


Pssm-ID: 240226 [Multi-domain]  Cd Length: 337  Bit Score: 72.52  E-value: 5.90e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146149270 155 ATVSGKPKMASAGLCAAAPVGEEKKMTEKHAGAGSPATVGSMDTLETVQLKLETMNAQADRAYLRLSRKFGQL-RLHHLE 233
Cdd:PTZ00007   2 ATAEDNQPIPMEDESDIIEGLDSIELDDEKLSHLTDEQRETLKKLQLLQKEFDDLEVEYNAELRKLRSKYEDLyNPIYDK 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146149270 234 RRNLLIQ---------SIPGFWGQAFQNHPQLSAFLNTKDKEVLSYLNRLEVEELG-LARLGYKIKFYFGRNPYFQNKVL 303
Cdd:PTZ00007  82 RKEALVQnggaeigtpGLPQFWLTAMKNNNTLGSAIEEHDEPILSYLSDISCEYTEpNKQEGFILVFTFAPNPFFSNTVL 161
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 146149270 304 IKEYGC----GPSGQVVS--RSAPIQWLPGHDL---------------QSLSKENPENNGSFFGWFSNHSSIESDKI 359
Cdd:PTZ00007 162 TKTYHMkvldGDDEPLLSntVATEIDWKQGKDVtkkvvtkkqrhkktkETRTVTETVDRESFFNFFTSHEVPSDEEL 238
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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