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Conserved domains on  [gi|442626167|ref|NP_001097088|]
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nuclear receptor coactivator 6, isoform F [Drosophila melanogaster]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Nucleic_acid_bd super family cl20165
Putative nucleic acid-binding region; This is a family of putative nucleic acid-binding ...
 12-64 6.50e-08

Putative nucleic acid-binding region; This is a family of putative nucleic acid-binding proteins. Several members are annotated as being nuclear receptor coactivator 6 proteins but this could not be confirmed.


The actual alignment was detected with superfamily member pfam13820:

Pssm-ID: 463988  Cd Length: 143  Bit Score: 53.97  E-value: 6.50e-08
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 442626167    12 VRILVSLPWDAAQRLRQLANDGNPELRALNIQSVQFEGDSVINLKVGG------QDIKI 64
Cdd:pfam13820   45 VRVTFSIPREAALRLRLLAQHNDPRLRDLGILSVQIEGEGPINLTLATmvqnpaDDIIL 103
 
Name Accession Description Interval E-value
Nucleic_acid_bd pfam13820
Putative nucleic acid-binding region; This is a family of putative nucleic acid-binding ...
 12-64 6.50e-08

Putative nucleic acid-binding region; This is a family of putative nucleic acid-binding proteins. Several members are annotated as being nuclear receptor coactivator 6 proteins but this could not be confirmed.


Pssm-ID: 463988  Cd Length: 143  Bit Score: 53.97  E-value: 6.50e-08
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 442626167    12 VRILVSLPWDAAQRLRQLANDGNPELRALNIQSVQFEGDSVINLKVGG------QDIKI 64
Cdd:pfam13820   45 VRVTFSIPREAALRLRLLAQHNDPRLRDLGILSVQIEGEGPINLTLATmvqnpaDDIIL 103
 
Name Accession Description Interval E-value
Nucleic_acid_bd pfam13820
Putative nucleic acid-binding region; This is a family of putative nucleic acid-binding ...
 12-64 6.50e-08

Putative nucleic acid-binding region; This is a family of putative nucleic acid-binding proteins. Several members are annotated as being nuclear receptor coactivator 6 proteins but this could not be confirmed.


Pssm-ID: 463988  Cd Length: 143  Bit Score: 53.97  E-value: 6.50e-08
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 442626167    12 VRILVSLPWDAAQRLRQLANDGNPELRALNIQSVQFEGDSVINLKVGG------QDIKI 64
Cdd:pfam13820   45 VRVTFSIPREAALRLRLLAQHNDPRLRDLGILSVQIEGEGPINLTLATmvqnpaDDIIL 103
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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