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Conserved domains on  [gi|161081196|ref|NP_001097497|]
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encore, isoform E [Drosophila melanogaster]

Protein Classification

R3H and SUZ domain-containing protein( domain architecture ID 10119061)

R3H and SUZ domain-containing protein may bind single-stranded nucleic acids through its R3H domain and RNA through its SUZ domain, similar to Zea mays DBF1-interactor protein 1 that is a potential regulator of DBF1 activity in stress responses

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
R3H_encore_like cd02642
R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the ...
443-503 1.63e-23

R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H domain is a potential regulator of DBF1 activity in stress responses. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.


:

Pssm-ID: 100071  Cd Length: 63  Bit Score: 95.36  E-value: 1.63e-23
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 161081196  443 DRNILLKIEKDLIDFVQENSRgCEYRFPPASSYNRMLIHRTAAFFGMEHNVDTETQQCVIV 503
Cdd:cd02642     1 DRLFVLKLEKDLLAFIKDSTR-QSLELPPMNSYYRLLAHRVAQYYGLDHNVDNSGGKCVIV 60
SUZ pfam12752
SUZ domain; The SUZ domain is a conserved RNA-binding domain found in eukaryotes and enriched ...
525-573 3.05e-08

SUZ domain; The SUZ domain is a conserved RNA-binding domain found in eukaryotes and enriched in positively charged amino acids. It was first characterized in the C.elegans protein Szy-20 where it has been shown to bind RNA and allow their localization to the centrosome. Warning- the domain has a compositionally biased character.


:

Pssm-ID: 463689 [Multi-domain]  Cd Length: 56  Bit Score: 51.55  E-value: 3.05e-08
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 161081196   525 RKSILKRDTHSFDEVRQ-SPYLCPLSLDRKAKSFEEREEDYDRARSRIFS 573
Cdd:pfam12752    4 KMKILRRPSSGSSSSSSaGSSGASSSSGSDSKTLEEREAEYAEARARIFG 53
PRK10263 super family cl35903
DNA translocase FtsK; Provisional
1098-1299 1.29e-04

DNA translocase FtsK; Provisional


The actual alignment was detected with superfamily member PRK10263:

Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 47.39  E-value: 1.29e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 161081196 1098 HTTTTPNGAAPyCATTYQQgpdgsIYAVPQGMVYAAYPQPGVGTAGGASQPLFQLTTSSHPPAQTIFASPEAGAEIPG-G 1176
Cdd:PRK10263  314 APITEPVAVAA-AATTATQ-----SWAAPVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIAPAPEGYPQQSQyA 387
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 161081196 1177 TYMIPVFDPAQQPREGLIPAQAIYQTGPGGPGATTVMPmATAAAYPTAQFATAAPNGAPIYQAPliySSEPGGGAQLQQL 1256
Cdd:PRK10263  388 QPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAP-EQPAQQPYYAPAPEQPVAGNAWQAE---EQQSTFAPQSTYQ 463
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 161081196 1257 PMAPYPIQYSYPYYHPISYYVPQQAVAAAPMVASQPQVGQAPM 1299
Cdd:PRK10263  464 TEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPARPPL 506
 
Name Accession Description Interval E-value
R3H_encore_like cd02642
R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the ...
443-503 1.63e-23

R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H domain is a potential regulator of DBF1 activity in stress responses. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.


Pssm-ID: 100071  Cd Length: 63  Bit Score: 95.36  E-value: 1.63e-23
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 161081196  443 DRNILLKIEKDLIDFVQENSRgCEYRFPPASSYNRMLIHRTAAFFGMEHNVDTETQQCVIV 503
Cdd:cd02642     1 DRLFVLKLEKDLLAFIKDSTR-QSLELPPMNSYYRLLAHRVAQYYGLDHNVDNSGGKCVIV 60
R3H pfam01424
R3H domain; The name of the R3H domain comes from the characteriztic spacing of the most ...
447-503 2.97e-11

R3H domain; The name of the R3H domain comes from the characteriztic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to be binding ssDNA.


Pssm-ID: 460206  Cd Length: 60  Bit Score: 60.20  E-value: 2.97e-11
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 161081196   447 LLKIEKDLIDFVQENSRgcEYRFPPASSYNRMLIHRTAAFFGMEHN-VDTETQQCVIV 503
Cdd:pfam01424    3 LEQLAEKLAEFVKDTGK--SLELPPMSSYERRIIHELAQKYGLESEsEGEEPNRRVVV 58
R3H smart00393
Putative single-stranded nucleic acids-binding domain;
428-503 3.37e-10

Putative single-stranded nucleic acids-binding domain;


Pssm-ID: 214647  Cd Length: 79  Bit Score: 58.08  E-value: 3.37e-10
                            10        20        30        40        50        60        70
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 161081196    428 DLLVFFRDTLNKNPKDRNILLKIEKDLIDFVqeNSRGCEYRFPPASSYNRMLIHRTAAFFGMEHN-VDTETQQCVIV 503
Cdd:smart00393    2 DFLPVTLDALSYRPRRREELIELELEIARFV--KSTKESVELPPMNSYERKIVHELAEKYGLESEsFGEGPKRRVVI 76
SUZ pfam12752
SUZ domain; The SUZ domain is a conserved RNA-binding domain found in eukaryotes and enriched ...
525-573 3.05e-08

SUZ domain; The SUZ domain is a conserved RNA-binding domain found in eukaryotes and enriched in positively charged amino acids. It was first characterized in the C.elegans protein Szy-20 where it has been shown to bind RNA and allow their localization to the centrosome. Warning- the domain has a compositionally biased character.


Pssm-ID: 463689 [Multi-domain]  Cd Length: 56  Bit Score: 51.55  E-value: 3.05e-08
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 161081196   525 RKSILKRDTHSFDEVRQ-SPYLCPLSLDRKAKSFEEREEDYDRARSRIFS 573
Cdd:pfam12752    4 KMKILRRPSSGSSSSSSaGSSGASSSSGSDSKTLEEREAEYAEARARIFG 53
PRK10263 PRK10263
DNA translocase FtsK; Provisional
1098-1299 1.29e-04

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 47.39  E-value: 1.29e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 161081196 1098 HTTTTPNGAAPyCATTYQQgpdgsIYAVPQGMVYAAYPQPGVGTAGGASQPLFQLTTSSHPPAQTIFASPEAGAEIPG-G 1176
Cdd:PRK10263  314 APITEPVAVAA-AATTATQ-----SWAAPVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIAPAPEGYPQQSQyA 387
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 161081196 1177 TYMIPVFDPAQQPREGLIPAQAIYQTGPGGPGATTVMPmATAAAYPTAQFATAAPNGAPIYQAPliySSEPGGGAQLQQL 1256
Cdd:PRK10263  388 QPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAP-EQPAQQPYYAPAPEQPVAGNAWQAE---EQQSTFAPQSTYQ 463
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 161081196 1257 PMAPYPIQYSYPYYHPISYYVPQQAVAAAPMVASQPQVGQAPM 1299
Cdd:PRK10263  464 TEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPARPPL 506
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
1079-1434 6.78e-03

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 41.44  E-value: 6.78e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 161081196  1079 TTTWTYTQSYQAPDGSTVFHTTTTPNGAAPYCATtyqqGPDGSIYaVPQGMVYAAYPQPGVGTAGgasqplfqlTTSSHP 1158
Cdd:pfam05109  413 TTTTHKVIFSKAPESTTTSPTLNTTGFAAPNTTT----GLPSSTH-VPTNLTAPASTGPTVSTAD---------VTSPTP 478
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 161081196  1159 PAQTIFASPeagaeipggtymipvFDPAQQPREGLIPAQAIYQTGPGGpGATTVMPMATAaayPTAQFATAAPNGApiyq 1238
Cdd:pfam05109  479 AGTTSGASP---------------VTPSPSPRDNGTESKAPDMTSPTS-AVTTPTPNATS---PTPAVTTPTPNAT---- 535
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 161081196  1239 APLIYSSEPGGgAQLQQLPMAPYPI--------QYSYPYYHPISyyvPQQAVAAAPMVASQPQVGQAPMQQQAPHTGAGT 1310
Cdd:pfam05109  536 SPTLGKTSPTS-AVTTPTPNATSPTpavttptpNATIPTLGKTS---PTSAVTTPTPNATSPTVGETSPQANTTNHTLGG 611
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 161081196  1311 TTGPPTVVSvsgqqhhqphQQHHQQQQHSSNGSVVTSSAYGTRVKRtPGGGSIHYNPSYTPSSVAHAG--GAHHPSAGSa 1388
Cdd:pfam05109  612 TSSTPVVTS----------PPKNATSAVTTGQHNITSSSTSSMSLR-PSSISETLSPSTSDNSTSHMPllTSAHPTGGE- 679
                          330       340       350       360
                   ....*....|....*....|....*....|....*....|....*.
gi 161081196  1389 QIIAAPAASTTTYHAlpTLTLAHGGPATGTDLSGAGGAHVYALPAQ 1434
Cdd:pfam05109  680 NITQVTPASTSTHHV--STSSPAPRPGTTSQASGPGNSSTSTKPGE 723
 
Name Accession Description Interval E-value
R3H_encore_like cd02642
R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the ...
443-503 1.63e-23

R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H domain is a potential regulator of DBF1 activity in stress responses. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.


Pssm-ID: 100071  Cd Length: 63  Bit Score: 95.36  E-value: 1.63e-23
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 161081196  443 DRNILLKIEKDLIDFVQENSRgCEYRFPPASSYNRMLIHRTAAFFGMEHNVDTETQQCVIV 503
Cdd:cd02642     1 DRLFVLKLEKDLLAFIKDSTR-QSLELPPMNSYYRLLAHRVAQYYGLDHNVDNSGGKCVIV 60
R3H pfam01424
R3H domain; The name of the R3H domain comes from the characteriztic spacing of the most ...
447-503 2.97e-11

R3H domain; The name of the R3H domain comes from the characteriztic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to be binding ssDNA.


Pssm-ID: 460206  Cd Length: 60  Bit Score: 60.20  E-value: 2.97e-11
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 161081196   447 LLKIEKDLIDFVQENSRgcEYRFPPASSYNRMLIHRTAAFFGMEHN-VDTETQQCVIV 503
Cdd:pfam01424    3 LEQLAEKLAEFVKDTGK--SLELPPMSSYERRIIHELAQKYGLESEsEGEEPNRRVVV 58
R3H smart00393
Putative single-stranded nucleic acids-binding domain;
428-503 3.37e-10

Putative single-stranded nucleic acids-binding domain;


Pssm-ID: 214647  Cd Length: 79  Bit Score: 58.08  E-value: 3.37e-10
                            10        20        30        40        50        60        70
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 161081196    428 DLLVFFRDTLNKNPKDRNILLKIEKDLIDFVqeNSRGCEYRFPPASSYNRMLIHRTAAFFGMEHN-VDTETQQCVIV 503
Cdd:smart00393    2 DFLPVTLDALSYRPRRREELIELELEIARFV--KSTKESVELPPMNSYERKIVHELAEKYGLESEsFGEGPKRRVVI 76
R3H cd02325
R3H domain. The name of the R3H domain comes from the characteristic spacing of the most ...
447-503 5.34e-10

R3H domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. R3H domains are found in proteins together with ATPase domains, SF1 helicase domains, SF2 DEAH helicase domains, Cys-rich repeats, ring-type zinc fingers, and KH domains. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.


Pssm-ID: 100064  Cd Length: 59  Bit Score: 56.85  E-value: 5.34e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 161081196  447 LLKIEKDLIDFVQeNSRGCEYRFPPASSYNRMLIHRTAAFFGMEHN-VDTETQQCVIV 503
Cdd:cd02325     1 REEREEELEAFAK-DAAGKSLELPPMNSYERKLIHDLAEYYGLKSEsEGEGPNRRVVI 57
SUZ pfam12752
SUZ domain; The SUZ domain is a conserved RNA-binding domain found in eukaryotes and enriched ...
525-573 3.05e-08

SUZ domain; The SUZ domain is a conserved RNA-binding domain found in eukaryotes and enriched in positively charged amino acids. It was first characterized in the C.elegans protein Szy-20 where it has been shown to bind RNA and allow their localization to the centrosome. Warning- the domain has a compositionally biased character.


Pssm-ID: 463689 [Multi-domain]  Cd Length: 56  Bit Score: 51.55  E-value: 3.05e-08
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 161081196   525 RKSILKRDTHSFDEVRQ-SPYLCPLSLDRKAKSFEEREEDYDRARSRIFS 573
Cdd:pfam12752    4 KMKILRRPSSGSSSSSSaGSSGASSSSGSDSKTLEEREAEYAEARARIFG 53
PRK10263 PRK10263
DNA translocase FtsK; Provisional
1098-1299 1.29e-04

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 47.39  E-value: 1.29e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 161081196 1098 HTTTTPNGAAPyCATTYQQgpdgsIYAVPQGMVYAAYPQPGVGTAGGASQPLFQLTTSSHPPAQTIFASPEAGAEIPG-G 1176
Cdd:PRK10263  314 APITEPVAVAA-AATTATQ-----SWAAPVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIAPAPEGYPQQSQyA 387
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 161081196 1177 TYMIPVFDPAQQPREGLIPAQAIYQTGPGGPGATTVMPmATAAAYPTAQFATAAPNGAPIYQAPliySSEPGGGAQLQQL 1256
Cdd:PRK10263  388 QPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAP-EQPAQQPYYAPAPEQPVAGNAWQAE---EQQSTFAPQSTYQ 463
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 161081196 1257 PMAPYPIQYSYPYYHPISYYVPQQAVAAAPMVASQPQVGQAPM 1299
Cdd:PRK10263  464 TEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPARPPL 506
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
1133-1315 1.07e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 44.10  E-value: 1.07e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 161081196 1133 AYPQPGVGTAGGASQPLFQLTTSSHPPAQTIFASPEAGAEIPGGTYMIPVFDPAQQP-REGLIPAQAIYQTGPGGPGATT 1211
Cdd:PRK12323  372 AGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPaPEALAAARQASARGPGGAPAPA 451
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 161081196 1212 VMPMATAAAYPTAQFATAAPNGAPIYQAPLIYSSEPGGGAQLQQLP-----------MAPYPIQYSYPYYHPISYYVPQQ 1280
Cdd:PRK12323  452 PAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPpweelppefasPAPAQPDAAPAGWVAESIPDPAT 531
                         170       180       190
                  ....*....|....*....|....*....|....*
gi 161081196 1281 AVAAAPMVASQPQVGQAPMQQQAPHTGAGTTTGPP 1315
Cdd:PRK12323  532 ADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPP 566
R3H_NF-X1 cd02643
R3H domain of the X1 box binding protein (NF-X1) and related proteins. Human NF-X1 is a ...
434-503 1.19e-03

R3H domain of the X1 box binding protein (NF-X1) and related proteins. Human NF-X1 is a transcription factor that regulates the expression of class II major histocompatibility complex (MHC) genes. The Drosophila homolog shuttle craft (STC) has been shown to be a DNA- or RNA-binding protein required for proper axon guidance in the central nervous system and, the yeast homolog FAP1 encodes a dosage suppressor of rapamycin toxicity. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.


Pssm-ID: 100072  Cd Length: 74  Bit Score: 39.26  E-value: 1.19e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 161081196  434 RDTLNKNPKDrniLLKIEKDLIDFVQENSRGCE----YRFPPASSYNRMLIHRTAAFFGMEH-NVDTETQQCVIV 503
Cdd:cd02643     1 KNMAKKDPKF---VKDVEKDLIELVESVNKGKQtsrsHSFPPMNREKRRIVHELAEHFGIESvSYDQEPKRNVVA 72
PHA03378 PHA03378
EBNA-3B; Provisional
1153-1388 1.49e-03

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 43.52  E-value: 1.49e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 161081196 1153 TTSSHPPAQT--------IFASPEAGAEIPGGTYMIPVF-DPAQQPREGLIPAQAIYQTGPGGP------GATTVMP--- 1214
Cdd:PHA03378  610 TTQSHIPETSaprqwpmpLRPIPMRPLRMQPITFNVLVFpTPHQPPQVEITPYKPTWTQIGHIPyqpsptGANTMLPiqw 689
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 161081196 1215 ----MATAAAYPTAQFATAAPNGAPIYQAPLIYSSEPGGGAQLQQLPMAPYPIQYSYPYYHPISYYVPQ---------QA 1281
Cdd:PHA03378  690 apgtMQPPPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAaapgrarppAA 769
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 161081196 1282 VAAAPMVASQPQVGQAPMQQ-QAPHTGAGTTTGPPTVVSVSGQQHHQPHQQHHQQQQHSSNGSVVT---SSAYGTRVKR- 1356
Cdd:PHA03378  770 APGAPTPQPPPQAPPAPQQRpRGAPTPQPPPQAGPTSMQLMPRAAPGQQGPTKQILRQLLTGGVKRgrpSLKKPAALERq 849
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 161081196 1357 -------TPGGGS--------IHYNPSYTPSSVAHAGGAHHPSAGSA 1388
Cdd:PHA03378  850 aaagptpSPGSGTsdkivqapVFYPPVLQPIQVMRQLGSVRAAAAST 896
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
1079-1434 6.78e-03

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 41.44  E-value: 6.78e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 161081196  1079 TTTWTYTQSYQAPDGSTVFHTTTTPNGAAPYCATtyqqGPDGSIYaVPQGMVYAAYPQPGVGTAGgasqplfqlTTSSHP 1158
Cdd:pfam05109  413 TTTTHKVIFSKAPESTTTSPTLNTTGFAAPNTTT----GLPSSTH-VPTNLTAPASTGPTVSTAD---------VTSPTP 478
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 161081196  1159 PAQTIFASPeagaeipggtymipvFDPAQQPREGLIPAQAIYQTGPGGpGATTVMPMATAaayPTAQFATAAPNGApiyq 1238
Cdd:pfam05109  479 AGTTSGASP---------------VTPSPSPRDNGTESKAPDMTSPTS-AVTTPTPNATS---PTPAVTTPTPNAT---- 535
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 161081196  1239 APLIYSSEPGGgAQLQQLPMAPYPI--------QYSYPYYHPISyyvPQQAVAAAPMVASQPQVGQAPMQQQAPHTGAGT 1310
Cdd:pfam05109  536 SPTLGKTSPTS-AVTTPTPNATSPTpavttptpNATIPTLGKTS---PTSAVTTPTPNATSPTVGETSPQANTTNHTLGG 611
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 161081196  1311 TTGPPTVVSvsgqqhhqphQQHHQQQQHSSNGSVVTSSAYGTRVKRtPGGGSIHYNPSYTPSSVAHAG--GAHHPSAGSa 1388
Cdd:pfam05109  612 TSSTPVVTS----------PPKNATSAVTTGQHNITSSSTSSMSLR-PSSISETLSPSTSDNSTSHMPllTSAHPTGGE- 679
                          330       340       350       360
                   ....*....|....*....|....*....|....*....|....*.
gi 161081196  1389 QIIAAPAASTTTYHAlpTLTLAHGGPATGTDLSGAGGAHVYALPAQ 1434
Cdd:pfam05109  680 NITQVTPASTSTHHV--STSSPAPRPGTTSQASGPGNSSTSTKPGE 723
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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