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Conserved domains on  [gi|161078491|ref|NP_001097865|]
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Ecdysone-induced protein 93F, isoform B [Drosophila melanogaster]

Protein Classification

HTH_psq domain-containing protein( domain architecture ID 10525231)

HTH_psq domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HTH_psq pfam05225
helix-turn-helix, Psq domain; This DNA-binding motif is found in four copies in the pipsqueak ...
 794-839 7.86e-12

helix-turn-helix, Psq domain; This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster. In pipsqueak this domain binds to GAGA sequence.


:

Pssm-ID: 283007  Cd Length: 45  Bit Score: 60.78  E-value: 7.86e-12
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 161078491   794 DRDSLVEAVKAVQRGEMSVHRAGSYYGVPHSTLeYKVKERHLMRPR 839
Cdd:pfam05225    1 TPEALAEALEAVRNGQMSIRKAARIYGIPYSTL-WRRKRGKYSLKR 45
 
Name Accession Description Interval E-value
HTH_psq pfam05225
helix-turn-helix, Psq domain; This DNA-binding motif is found in four copies in the pipsqueak ...
 794-839 7.86e-12

helix-turn-helix, Psq domain; This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster. In pipsqueak this domain binds to GAGA sequence.


Pssm-ID: 283007  Cd Length: 45  Bit Score: 60.78  E-value: 7.86e-12
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 161078491   794 DRDSLVEAVKAVQRGEMSVHRAGSYYGVPHSTLeYKVKERHLMRPR 839
Cdd:pfam05225    1 TPEALAEALEAVRNGQMSIRKAARIYGIPYSTL-WRRKRGKYSLKR 45
 
Name Accession Description Interval E-value
HTH_psq pfam05225
helix-turn-helix, Psq domain; This DNA-binding motif is found in four copies in the pipsqueak ...
 794-839 7.86e-12

helix-turn-helix, Psq domain; This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster. In pipsqueak this domain binds to GAGA sequence.


Pssm-ID: 283007  Cd Length: 45  Bit Score: 60.78  E-value: 7.86e-12
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 161078491   794 DRDSLVEAVKAVQRGEMSVHRAGSYYGVPHSTLeYKVKERHLMRPR 839
Cdd:pfam05225    1 TPEALAEALEAVRNGQMSIRKAARIYGIPYSTL-WRRKRGKYSLKR 45
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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