NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|157279933|ref|NP_001098482|]
View 

zinc finger protein 474 isoform 1 [Bos taurus]

Protein Classification

C2HC-type zinc finger protein( domain architecture ID 10621545)

C2HC-type zinc finger protein similar to Homo sapiens zinc finger protein 474 (ZNF474), a testis-specific zinc finger protein

CATH:  4.10.320.30
Gene Ontology:  GO:0008270
PubMed:  1280325|17210253|12665246
SCOP:  4003606

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
zf-C2HC_2 pfam13913
zinc-finger of a C2HC-type; This family contains a number of divergent C2H2 type zinc fingers.
 425-449 9.79e-08

zinc-finger of a C2HC-type; This family contains a number of divergent C2H2 type zinc fingers.


:

Pssm-ID: 464037  Cd Length: 25  Bit Score: 47.57  E-value: 9.79e-08
                          10        20
                  ....*....|....*....|....*
gi 157279933  425 QLVPCNICGRTFLPDRLIVHQRSCK 449
Cdd:pfam13913   1 ELVPCPICGRTFNPDRLAKHEKICK 25
zf-C2HC_2 pfam13913
zinc-finger of a C2HC-type; This family contains a number of divergent C2H2 type zinc fingers.
 162-186 4.92e-07

zinc-finger of a C2HC-type; This family contains a number of divergent C2H2 type zinc fingers.


:

Pssm-ID: 464037  Cd Length: 25  Bit Score: 45.65  E-value: 4.92e-07
                          10        20
                  ....*....|....*....|....*
gi 157279933  162 QLLPCETCGRTFLPDRLLVHQRSCK 186
Cdd:pfam13913   1 ELVPCPICGRTFNPDRLAKHEKICK 25
zf-C2HC_2 pfam13913
zinc-finger of a C2HC-type; This family contains a number of divergent C2H2 type zinc fingers.
 281-305 2.42e-06

zinc-finger of a C2HC-type; This family contains a number of divergent C2H2 type zinc fingers.


:

Pssm-ID: 464037  Cd Length: 25  Bit Score: 43.72  E-value: 2.42e-06
                          10        20
                  ....*....|....*....|....*
gi 157279933  281 QLVSCPNCSQTFAPDRLPVHQRSCK 305
Cdd:pfam13913   1 ELVPCPICGRTFNPDRLAKHEKICK 25
zf-C2HC_2 pfam13913
zinc-finger of a C2HC-type; This family contains a number of divergent C2H2 type zinc fingers.
 219-241 1.88e-04

zinc-finger of a C2HC-type; This family contains a number of divergent C2H2 type zinc fingers.


:

Pssm-ID: 464037  Cd Length: 25  Bit Score: 38.33  E-value: 1.88e-04
                          10        20
                  ....*....|....*....|...
gi 157279933  219 TVICYICGREFGTLSLPIHEPKC 241
Cdd:pfam13913   2 LVPCPICGRTFNPDRLAKHEKIC 24
zf-C2HC_2 pfam13913
zinc-finger of a C2HC-type; This family contains a number of divergent C2H2 type zinc fingers.
 352-375 5.26e-04

zinc-finger of a C2HC-type; This family contains a number of divergent C2H2 type zinc fingers.


:

Pssm-ID: 464037  Cd Length: 25  Bit Score: 37.17  E-value: 5.26e-04
                          10        20
                  ....*....|....*....|....
gi 157279933  352 PTIVCYICGREYGTKSIAIHEPQC 375
Cdd:pfam13913   1 ELVPCPICGRTFNPDRLAKHEKIC 24
zf-C2HC_2 pfam13913
zinc-finger of a C2HC-type; This family contains a number of divergent C2H2 type zinc fingers.
 95-114 8.75e-04

zinc-finger of a C2HC-type; This family contains a number of divergent C2H2 type zinc fingers.


:

Pssm-ID: 464037  Cd Length: 25  Bit Score: 36.40  E-value: 8.75e-04
                          10        20
                  ....*....|....*....|
gi 157279933   95 CYICGREFGSQSLGIHEPQC 114
Cdd:pfam13913   5 CPICGRTFNPDRLAKHEKIC 24
 
Name Accession Description Interval E-value
zf-C2HC_2 pfam13913
zinc-finger of a C2HC-type; This family contains a number of divergent C2H2 type zinc fingers.
 425-449 9.79e-08

zinc-finger of a C2HC-type; This family contains a number of divergent C2H2 type zinc fingers.


Pssm-ID: 464037  Cd Length: 25  Bit Score: 47.57  E-value: 9.79e-08
                          10        20
                  ....*....|....*....|....*
gi 157279933  425 QLVPCNICGRTFLPDRLIVHQRSCK 449
Cdd:pfam13913   1 ELVPCPICGRTFNPDRLAKHEKICK 25
zf-C2HC_2 pfam13913
zinc-finger of a C2HC-type; This family contains a number of divergent C2H2 type zinc fingers.
 162-186 4.92e-07

zinc-finger of a C2HC-type; This family contains a number of divergent C2H2 type zinc fingers.


Pssm-ID: 464037  Cd Length: 25  Bit Score: 45.65  E-value: 4.92e-07
                          10        20
                  ....*....|....*....|....*
gi 157279933  162 QLLPCETCGRTFLPDRLLVHQRSCK 186
Cdd:pfam13913   1 ELVPCPICGRTFNPDRLAKHEKICK 25
zf-C2HC_2 pfam13913
zinc-finger of a C2HC-type; This family contains a number of divergent C2H2 type zinc fingers.
 281-305 2.42e-06

zinc-finger of a C2HC-type; This family contains a number of divergent C2H2 type zinc fingers.


Pssm-ID: 464037  Cd Length: 25  Bit Score: 43.72  E-value: 2.42e-06
                          10        20
                  ....*....|....*....|....*
gi 157279933  281 QLVSCPNCSQTFAPDRLPVHQRSCK 305
Cdd:pfam13913   1 ELVPCPICGRTFNPDRLAKHEKICK 25
zf-C2HC_2 pfam13913
zinc-finger of a C2HC-type; This family contains a number of divergent C2H2 type zinc fingers.
 219-241 1.88e-04

zinc-finger of a C2HC-type; This family contains a number of divergent C2H2 type zinc fingers.


Pssm-ID: 464037  Cd Length: 25  Bit Score: 38.33  E-value: 1.88e-04
                          10        20
                  ....*....|....*....|...
gi 157279933  219 TVICYICGREFGTLSLPIHEPKC 241
Cdd:pfam13913   2 LVPCPICGRTFNPDRLAKHEKIC 24
zf-C2HC_2 pfam13913
zinc-finger of a C2HC-type; This family contains a number of divergent C2H2 type zinc fingers.
 352-375 5.26e-04

zinc-finger of a C2HC-type; This family contains a number of divergent C2H2 type zinc fingers.


Pssm-ID: 464037  Cd Length: 25  Bit Score: 37.17  E-value: 5.26e-04
                          10        20
                  ....*....|....*....|....
gi 157279933  352 PTIVCYICGREYGTKSIAIHEPQC 375
Cdd:pfam13913   1 ELVPCPICGRTFNPDRLAKHEKIC 24
zf-C2HC_2 pfam13913
zinc-finger of a C2HC-type; This family contains a number of divergent C2H2 type zinc fingers.
 95-114 8.75e-04

zinc-finger of a C2HC-type; This family contains a number of divergent C2H2 type zinc fingers.


Pssm-ID: 464037  Cd Length: 25  Bit Score: 36.40  E-value: 8.75e-04
                          10        20
                  ....*....|....*....|
gi 157279933   95 CYICGREFGSQSLGIHEPQC 114
Cdd:pfam13913   5 CPICGRTFNPDRLAKHEKIC 24
 
Name Accession Description Interval E-value
zf-C2HC_2 pfam13913
zinc-finger of a C2HC-type; This family contains a number of divergent C2H2 type zinc fingers.
 425-449 9.79e-08

zinc-finger of a C2HC-type; This family contains a number of divergent C2H2 type zinc fingers.


Pssm-ID: 464037  Cd Length: 25  Bit Score: 47.57  E-value: 9.79e-08
                          10        20
                  ....*....|....*....|....*
gi 157279933  425 QLVPCNICGRTFLPDRLIVHQRSCK 449
Cdd:pfam13913   1 ELVPCPICGRTFNPDRLAKHEKICK 25
zf-C2HC_2 pfam13913
zinc-finger of a C2HC-type; This family contains a number of divergent C2H2 type zinc fingers.
 162-186 4.92e-07

zinc-finger of a C2HC-type; This family contains a number of divergent C2H2 type zinc fingers.


Pssm-ID: 464037  Cd Length: 25  Bit Score: 45.65  E-value: 4.92e-07
                          10        20
                  ....*....|....*....|....*
gi 157279933  162 QLLPCETCGRTFLPDRLLVHQRSCK 186
Cdd:pfam13913   1 ELVPCPICGRTFNPDRLAKHEKICK 25
zf-C2HC_2 pfam13913
zinc-finger of a C2HC-type; This family contains a number of divergent C2H2 type zinc fingers.
 281-305 2.42e-06

zinc-finger of a C2HC-type; This family contains a number of divergent C2H2 type zinc fingers.


Pssm-ID: 464037  Cd Length: 25  Bit Score: 43.72  E-value: 2.42e-06
                          10        20
                  ....*....|....*....|....*
gi 157279933  281 QLVSCPNCSQTFAPDRLPVHQRSCK 305
Cdd:pfam13913   1 ELVPCPICGRTFNPDRLAKHEKICK 25
zf-C2HC_2 pfam13913
zinc-finger of a C2HC-type; This family contains a number of divergent C2H2 type zinc fingers.
 219-241 1.88e-04

zinc-finger of a C2HC-type; This family contains a number of divergent C2H2 type zinc fingers.


Pssm-ID: 464037  Cd Length: 25  Bit Score: 38.33  E-value: 1.88e-04
                          10        20
                  ....*....|....*....|...
gi 157279933  219 TVICYICGREFGTLSLPIHEPKC 241
Cdd:pfam13913   2 LVPCPICGRTFNPDRLAKHEKIC 24
zf-C2HC_2 pfam13913
zinc-finger of a C2HC-type; This family contains a number of divergent C2H2 type zinc fingers.
 352-375 5.26e-04

zinc-finger of a C2HC-type; This family contains a number of divergent C2H2 type zinc fingers.


Pssm-ID: 464037  Cd Length: 25  Bit Score: 37.17  E-value: 5.26e-04
                          10        20
                  ....*....|....*....|....
gi 157279933  352 PTIVCYICGREYGTKSIAIHEPQC 375
Cdd:pfam13913   1 ELVPCPICGRTFNPDRLAKHEKIC 24
zf-C2HC_2 pfam13913
zinc-finger of a C2HC-type; This family contains a number of divergent C2H2 type zinc fingers.
 95-114 8.75e-04

zinc-finger of a C2HC-type; This family contains a number of divergent C2H2 type zinc fingers.


Pssm-ID: 464037  Cd Length: 25  Bit Score: 36.40  E-value: 8.75e-04
                          10        20
                  ....*....|....*....|
gi 157279933   95 CYICGREFGSQSLGIHEPQC 114
Cdd:pfam13913   5 CPICGRTFNPDRLAKHEKIC 24
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH