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Conserved domains on  [gi|157818213|ref|NP_001103029|]
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uncharacterized protein C11orf52 homolog [Rattus norvegicus]

Protein Classification

DUF4578 domain-containing protein( domain architecture ID 10633498)

DUF4578 domain-containing protein similar to Homo sapiens protein C11orf52

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4578 pfam15147
Domain of unknown function (DUF4578); This family of proteins is found in eukaryotes. Proteins ...
 1-126 1.53e-66

Domain of unknown function (DUF4578); This family of proteins is found in eukaryotes. Proteins in this family are typically between 44 and 137 amino acids in length.


:

Pssm-ID: 464531  Cd Length: 126  Bit Score: 197.03  E-value: 1.53e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818213    1 MGNRLCCGGSWSCPSTFQKRNKTGSQTRPTLNIlKQQQLWQNGTKDYETTAPMYERVLHPSVPQKKSSDCTSEENDLHYA 80
Cdd:pfam15147   1 MGNQLCCGGSWSCPSTFQRKKKTGSQARRTLKQ-QQQQQQQNGTKDHDTTGHTYEQVLEQPASQERSQGLRSEESSLHYA 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 157818213   81 DIHVLSQMRPHSL-KVKCLRSESATEYATLRFPQATPQYDSNNGTLV 126
Cdd:pfam15147  80 DIQVCSQTQPRSAgEVKHLQLENATEYATLRFPQATPRYDSKNGTLV 126
 
Name Accession Description Interval E-value
DUF4578 pfam15147
Domain of unknown function (DUF4578); This family of proteins is found in eukaryotes. Proteins ...
 1-126 1.53e-66

Domain of unknown function (DUF4578); This family of proteins is found in eukaryotes. Proteins in this family are typically between 44 and 137 amino acids in length.


Pssm-ID: 464531  Cd Length: 126  Bit Score: 197.03  E-value: 1.53e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818213    1 MGNRLCCGGSWSCPSTFQKRNKTGSQTRPTLNIlKQQQLWQNGTKDYETTAPMYERVLHPSVPQKKSSDCTSEENDLHYA 80
Cdd:pfam15147   1 MGNQLCCGGSWSCPSTFQRKKKTGSQARRTLKQ-QQQQQQQNGTKDHDTTGHTYEQVLEQPASQERSQGLRSEESSLHYA 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 157818213   81 DIHVLSQMRPHSL-KVKCLRSESATEYATLRFPQATPQYDSNNGTLV 126
Cdd:pfam15147  80 DIQVCSQTQPRSAgEVKHLQLENATEYATLRFPQATPRYDSKNGTLV 126
 
Name Accession Description Interval E-value
DUF4578 pfam15147
Domain of unknown function (DUF4578); This family of proteins is found in eukaryotes. Proteins ...
 1-126 1.53e-66

Domain of unknown function (DUF4578); This family of proteins is found in eukaryotes. Proteins in this family are typically between 44 and 137 amino acids in length.


Pssm-ID: 464531  Cd Length: 126  Bit Score: 197.03  E-value: 1.53e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818213    1 MGNRLCCGGSWSCPSTFQKRNKTGSQTRPTLNIlKQQQLWQNGTKDYETTAPMYERVLHPSVPQKKSSDCTSEENDLHYA 80
Cdd:pfam15147   1 MGNQLCCGGSWSCPSTFQRKKKTGSQARRTLKQ-QQQQQQQNGTKDHDTTGHTYEQVLEQPASQERSQGLRSEESSLHYA 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 157818213   81 DIHVLSQMRPHSL-KVKCLRSESATEYATLRFPQATPQYDSNNGTLV 126
Cdd:pfam15147  80 DIQVCSQTQPRSAgEVKHLQLENATEYATLRFPQATPRYDSKNGTLV 126
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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