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Conserved domains on  [gi|193208746|ref|NP_001123016|]
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GLOBIN domain-containing protein [Caenorhabditis elegans]

Protein Classification

globin( domain architecture ID 10099307)

M-family globin similar to a variety of single-domain globins such as myoglobin and hemoglobin

CATH:  1.10.490.10
Gene Ontology:  GO:0019825|GO:0020037|GO:0005344|GO:0005506|GO:0015671
PubMed:  32863222|16061809|19281958|23209182
SCOP:  4000551

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Mb-like cd01040
myoglobin-like; M family globin domain; This family includes chimeric (FHbs/flavohemoglobins) ...
 85-186 2.16e-09

myoglobin-like; M family globin domain; This family includes chimeric (FHbs/flavohemoglobins) and single-domain globins: FHbs, Ngbs/neuroglobins, Cygb/cytoglobins, GbE/avian eye specific globin E, GbX/globin X, amphibian GbY/globin Y, Mb/myoglobin, HbA/hemoglobin-alpha, HbB/hemoglobin-beta, SDgbs/single-domain globins related to FHbs, and Adgb/androglobin. The M family exhibits the canonical secondary structure of hemoglobins, a 3-over-3 alpha-helical sandwich structure (3/3 Mb-fold), built by eight alpha-helical segments (named A through H). In Adgbs, the globin domain is split into two: helices C-H are followed by helices A-B and the two parts are separated by the IQ motif. Although rearranged, the globin domain of most Adgbs contains a number of conserved residues which play critical roles in heme-coordination and gas ligand binding. Adgbs have been omitted from this A-H helix cd.


:

Pssm-ID: 381254  Cd Length: 133  Bit Score: 55.15  E-value: 2.16e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193208746  85 WNRMdRGTVYEMGRRMFEHVFTENPQYLAFIDLKNEVN--WWNHINFKIHVQRFVTVLIETMRRLKEPSTSIDILRDFGA 162
Cdd:cd01040    5 WARV-KKDKEEFGVAIFLRLFEANPELKKLFPKFAGVDldLKGSPEFKAHAKRVVGALDSLIDNLDDPEALDALLRKLGK 83

                         90       100
                 ....*....|....*....|....
gi 193208746 163 IYAKYpkRVSALYFERLANSMNEA 186
Cdd:cd01040   84 RHKRR--GVTPEHFEVFGEALLET 105
 
Name Accession Description Interval E-value
Mb-like cd01040
myoglobin-like; M family globin domain; This family includes chimeric (FHbs/flavohemoglobins) ...
 85-186 2.16e-09

myoglobin-like; M family globin domain; This family includes chimeric (FHbs/flavohemoglobins) and single-domain globins: FHbs, Ngbs/neuroglobins, Cygb/cytoglobins, GbE/avian eye specific globin E, GbX/globin X, amphibian GbY/globin Y, Mb/myoglobin, HbA/hemoglobin-alpha, HbB/hemoglobin-beta, SDgbs/single-domain globins related to FHbs, and Adgb/androglobin. The M family exhibits the canonical secondary structure of hemoglobins, a 3-over-3 alpha-helical sandwich structure (3/3 Mb-fold), built by eight alpha-helical segments (named A through H). In Adgbs, the globin domain is split into two: helices C-H are followed by helices A-B and the two parts are separated by the IQ motif. Although rearranged, the globin domain of most Adgbs contains a number of conserved residues which play critical roles in heme-coordination and gas ligand binding. Adgbs have been omitted from this A-H helix cd.


Pssm-ID: 381254  Cd Length: 133  Bit Score: 55.15  E-value: 2.16e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193208746  85 WNRMdRGTVYEMGRRMFEHVFTENPQYLAFIDLKNEVN--WWNHINFKIHVQRFVTVLIETMRRLKEPSTSIDILRDFGA 162
Cdd:cd01040    5 WARV-KKDKEEFGVAIFLRLFEANPELKKLFPKFAGVDldLKGSPEFKAHAKRVVGALDSLIDNLDDPEALDALLRKLGK 83

                         90       100
                 ....*....|....*....|....
gi 193208746 163 IYAKYpkRVSALYFERLANSMNEA 186
Cdd:cd01040   84 RHKRR--GVTPEHFEVFGEALLET 105
 
Name Accession Description Interval E-value
Mb-like cd01040
myoglobin-like; M family globin domain; This family includes chimeric (FHbs/flavohemoglobins) ...
 85-186 2.16e-09

myoglobin-like; M family globin domain; This family includes chimeric (FHbs/flavohemoglobins) and single-domain globins: FHbs, Ngbs/neuroglobins, Cygb/cytoglobins, GbE/avian eye specific globin E, GbX/globin X, amphibian GbY/globin Y, Mb/myoglobin, HbA/hemoglobin-alpha, HbB/hemoglobin-beta, SDgbs/single-domain globins related to FHbs, and Adgb/androglobin. The M family exhibits the canonical secondary structure of hemoglobins, a 3-over-3 alpha-helical sandwich structure (3/3 Mb-fold), built by eight alpha-helical segments (named A through H). In Adgbs, the globin domain is split into two: helices C-H are followed by helices A-B and the two parts are separated by the IQ motif. Although rearranged, the globin domain of most Adgbs contains a number of conserved residues which play critical roles in heme-coordination and gas ligand binding. Adgbs have been omitted from this A-H helix cd.


Pssm-ID: 381254  Cd Length: 133  Bit Score: 55.15  E-value: 2.16e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193208746  85 WNRMdRGTVYEMGRRMFEHVFTENPQYLAFIDLKNEVN--WWNHINFKIHVQRFVTVLIETMRRLKEPSTSIDILRDFGA 162
Cdd:cd01040    5 WARV-KKDKEEFGVAIFLRLFEANPELKKLFPKFAGVDldLKGSPEFKAHAKRVVGALDSLIDNLDDPEALDALLRKLGK 83

                         90       100
                 ....*....|....*....|....
gi 193208746 163 IYAKYpkRVSALYFERLANSMNEA 186
Cdd:cd01040   84 RHKRR--GVTPEHFEVFGEALLET 105
CeGLB25-like cd14766
Caenorhabditis elegans globin GLB-25, and related globins; The C. elegans genome contains 33 ...
 81-168 3.44e-03

Caenorhabditis elegans globin GLB-25, and related globins; The C. elegans genome contains 33 genes encoding globins that are all transcribed. These are very diverse in gene and protein structure and are localized in a variety of cells. The C. elegans globin GLB-25 (locus tag T06A1.3), like the majority of them, was expressed in neuronal cells in the head and tail portions of the body and in the nerve cord.


Pssm-ID: 381279  Cd Length: 137  Bit Score: 37.30  E-value: 3.44e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193208746  81 LARKWNRMDRGTVyEMGRRMFEHVFTENPQYLAFIDLKNEVNWWNHIN-----FKIHVQRFVTVLIETMRRLKEPSTSID 155
Cdd:cd14766    1 LKKSWKGIARKID-ETGKTMFLRMLTENPELKELFPKLKNLEDEEDELrsseiLENHAARVMDTLDEAISNIENVDYVID 79

                         90
                 ....*....|...
gi 193208746 156 ILRDFGAIYAKYP 168
Cdd:cd14766   80 LLHKVGKMHAKKP 92
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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