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Conserved domains on  [gi|334182264|ref|NP_001184898|]
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ELKS/Rab6-interacting/CAST family protein [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CCDC158 super family cl37899
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
 286-492 9.70e-07

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


The actual alignment was detected with superfamily member pfam15921:

Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 52.04  E-value: 9.70e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182264   286 DQLEDIIEDAKSNKKNLLTEMETVTNIMREVELKEKDAEKSKEEAA--RGGLD-TLQKVEELKKMLEHAKEAN---DMHA 359
Cdd:pfam15921  475 EMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITklRSRVDlKLQELQHLKNEGDHLRNVQtecEALK 554

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182264   360 GEVYGEKSILATEVKELENrLLNLSEERNKSLAILDEMRGSLEIRLA-AALELKKTaeKEKKDKEDSALKALAEQEANME 438
Cdd:pfam15921  555 LQMAEKDKVIEILRQQIEN-MTQLVGQHGRTAGAMQVEKAQLEKEINdRRLELQEF--KILKDKKDAKIRELEARVSDLE 631

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 334182264   439 kvVQESKLLQQEAEENSKLRDFLMDRGQI---VDTLQGEISVICQDVKLLKEKFENR 492
Cdd:pfam15921  632 --LEKVKLVNAGSERLRAVKDIKQERDQLlneVKTSRNELNSLSEDYEVLKRNFRNK 686
 
Name Accession Description Interval E-value
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
 286-492 9.70e-07

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 52.04  E-value: 9.70e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182264   286 DQLEDIIEDAKSNKKNLLTEMETVTNIMREVELKEKDAEKSKEEAA--RGGLD-TLQKVEELKKMLEHAKEAN---DMHA 359
Cdd:pfam15921  475 EMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITklRSRVDlKLQELQHLKNEGDHLRNVQtecEALK 554

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182264   360 GEVYGEKSILATEVKELENrLLNLSEERNKSLAILDEMRGSLEIRLA-AALELKKTaeKEKKDKEDSALKALAEQEANME 438
Cdd:pfam15921  555 LQMAEKDKVIEILRQQIEN-MTQLVGQHGRTAGAMQVEKAQLEKEINdRRLELQEF--KILKDKKDAKIRELEARVSDLE 631

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 334182264   439 kvVQESKLLQQEAEENSKLRDFLMDRGQI---VDTLQGEISVICQDVKLLKEKFENR 492
Cdd:pfam15921  632 --LEKVKLVNAGSERLRAVKDIKQERDQLlneVKTSRNELNSLSEDYEVLKRNFRNK 686
PTZ00121 PTZ00121
MAEBL; Provisional
 317-456 1.58e-06

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 51.30  E-value: 1.58e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182264  317 ELKEKDAEKSKEEAARGGLDTLQKVEELKKMLEHAKEANDMHAGevygeksilATEVKELENrLLNLSEERNKSlailDE 396
Cdd:PTZ00121 1409 ELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKK---------AEEAKKAEE-AKKKAEEAKKA----DE 1474

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 334182264  397 MRGSLEIRLAAAlELKKTAEKEKKDKEDSALKALAEQEANMEKVVQESKLLQQ--EAEENSK 456
Cdd:PTZ00121 1475 AKKKAEEAKKAD-EAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEakKAEEAKK 1535
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 314-459 5.52e-04

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 43.00  E-value: 5.52e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182264 314 REVELKEKDAEKSKEEAARGGLDTLQ-KVEELKKMLEHAKEANDMHAGEVYgeksILATEVKELENRLLNLSEERNKSLA 392
Cdd:COG1196  241 LEELEAELEELEAELEELEAELAELEaELEELRLELEELELELEEAQAEEY----ELLAELARLEQDIARLEERRRELEE 316

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 334182264 393 ILDEMRGSLEiRLAAALELKKTAEKEKKDKEDSALKALAEQEANMEKVVQESKLLQQEAEENSKLRD 459
Cdd:COG1196  317 RLEELEEELA-ELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELE 382
 
Name Accession Description Interval E-value
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
 286-492 9.70e-07

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 52.04  E-value: 9.70e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182264   286 DQLEDIIEDAKSNKKNLLTEMETVTNIMREVELKEKDAEKSKEEAA--RGGLD-TLQKVEELKKMLEHAKEAN---DMHA 359
Cdd:pfam15921  475 EMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITklRSRVDlKLQELQHLKNEGDHLRNVQtecEALK 554

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182264   360 GEVYGEKSILATEVKELENrLLNLSEERNKSLAILDEMRGSLEIRLA-AALELKKTaeKEKKDKEDSALKALAEQEANME 438
Cdd:pfam15921  555 LQMAEKDKVIEILRQQIEN-MTQLVGQHGRTAGAMQVEKAQLEKEINdRRLELQEF--KILKDKKDAKIRELEARVSDLE 631

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 334182264   439 kvVQESKLLQQEAEENSKLRDFLMDRGQI---VDTLQGEISVICQDVKLLKEKFENR 492
Cdd:pfam15921  632 --LEKVKLVNAGSERLRAVKDIKQERDQLlneVKTSRNELNSLSEDYEVLKRNFRNK 686
PTZ00121 PTZ00121
MAEBL; Provisional
 317-456 1.58e-06

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 51.30  E-value: 1.58e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182264  317 ELKEKDAEKSKEEAARGGLDTLQKVEELKKMLEHAKEANDMHAGevygeksilATEVKELENrLLNLSEERNKSlailDE 396
Cdd:PTZ00121 1409 ELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKK---------AEEAKKAEE-AKKKAEEAKKA----DE 1474

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 334182264  397 MRGSLEIRLAAAlELKKTAEKEKKDKEDSALKALAEQEANMEKVVQESKLLQQ--EAEENSK 456
Cdd:PTZ00121 1475 AKKKAEEAKKAD-EAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEakKAEEAKK 1535
PTZ00121 PTZ00121
MAEBL; Provisional
 293-456 3.65e-06

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 50.14  E-value: 3.65e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182264  293 EDAKSNKKNLLTEMETVTNIMREVELKEKDAEKSK-EEAARGGLDTLQKVEELKKMLEHAKEANDMHAGEVYGEKSILAT 371
Cdd:PTZ00121 1282 ELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKaDEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEA 1361

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182264  372 EVKELENRLLNLSEERNKSlailDEMRGSLEiRLAAALELKKTAEKEKKDKEDSALKALAEQEANMEKVVQESKL----L 447
Cdd:PTZ00121 1362 AEEKAEAAEKKKEEAKKKA----DAAKKKAE-EKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKkadeA 1436


                  ....*....
gi 334182264  448 QQEAEENSK 456
Cdd:PTZ00121 1437 KKKAEEAKK 1445
PTZ00121 PTZ00121
MAEBL; Provisional
 293-465 1.52e-05

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 48.21  E-value: 1.52e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182264  293 EDAKSNKKNLLTEMETVTNIMREVELKEKDAEKSKEEAARGGLDTLQKVEELKKMLEHAKEANDMHAGEvygeksilATE 372
Cdd:PTZ00121 1629 EEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKE--------AEE 1700

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182264  373 VKELENRLLNLSEERNKSlailDEMRGSLEIRLAAALELKKTAEKEKKDKEDsalkaLAEQEANMEKVVQESKLLQQEAE 452
Cdd:PTZ00121 1701 AKKAEELKKKEAEEKKKA----EELKKAEEENKIKAEEAKKEAEEDKKKAEE-----AKKDEEEKKKIAHLKKEEEKKAE 1771

                         170
                  ....*....|...
gi 334182264  453 ENSKLRDFLMDRG 465
Cdd:PTZ00121 1772 EIRKEKEAVIEEE 1784
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
 287-491 5.11e-05

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 46.26  E-value: 5.11e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182264   287 QLEDIIEDAKSNKKNLLTEMETVTNIMREVELKEKDAEKSKEEAARGGLDTLQKVEELKKmlehakeandmhagevygEK 366
Cdd:pfam15921  594 QLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQ------------------ER 655

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182264   367 SILATEVKELENRLLNLSEE--------RNKSLAI-----------------LDEMRGSLE---------IRLAAALELK 412
Cdd:pfam15921  656 DQLLNEVKTSRNELNSLSEDyevlkrnfRNKSEEMetttnklkmqlksaqseLEQTRNTLKsmegsdghaMKVAMGMQKQ 735

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 334182264   413 KTAEKEKKDKEDSALKALAEQEANMEKvvqESKLLQqeaEENSKLRDFLMDRGQIVDTLQGEISVICQDVKLLKEKFEN 491
Cdd:pfam15921  736 ITAKRGQIDALQSKIQFLEEAMTNANK---EKHFLK---EEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVAN 808
PRK12704 PRK12704
phosphodiesterase; Provisional
 316-478 4.30e-04

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 43.23  E-value: 4.30e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182264 316 VELKEKDAEKSKEEAARggldtlqKVEELKK-MLEHAKEANDMHAGEVYGEKSILATEVKELENRLLNLSEERNKSLAIL 394
Cdd:PRK12704  33 IKEAEEEAKRILEEAKK-------EAEAIKKeALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELL 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182264 395 DEMRGSLEIRLAAALELKKTAEKEKKDKEdsalKALAEQEANMEKVvqeSKLLQQEAeensklRDFLMDrgQIVDTLQGE 474
Cdd:PRK12704 106 EKREEELEKKEKELEQKQQELEKKEEELE----ELIEEQLQELERI---SGLTAEEA------KEILLE--KVEEEARHE 170


                 ....
gi 334182264 475 ISVI 478
Cdd:PRK12704 171 AAVL 174
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 314-459 5.52e-04

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 43.00  E-value: 5.52e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182264 314 REVELKEKDAEKSKEEAARGGLDTLQ-KVEELKKMLEHAKEANDMHAGEVYgeksILATEVKELENRLLNLSEERNKSLA 392
Cdd:COG1196  241 LEELEAELEELEAELEELEAELAELEaELEELRLELEELELELEEAQAEEY----ELLAELARLEQDIARLEERRRELEE 316

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 334182264 393 ILDEMRGSLEiRLAAALELKKTAEKEKKDKEDSALKALAEQEANMEKVVQESKLLQQEAEENSKLRD 459
Cdd:COG1196  317 RLEELEEELA-ELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELE 382
PTZ00121 PTZ00121
MAEBL; Provisional
 286-456 1.08e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 42.05  E-value: 1.08e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182264  286 DQLEDIIEDAKSNKKNLLTEMETVTNIMREVELKEKDAEKSKEEAARggldtlqKVEELKKMLEHAKEANDMHAGevyge 365
Cdd:PTZ00121 1332 DAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKK-------KADAAKKKAEEKKKADEAKKK----- 1399

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182264  366 ksilATEVKELENRLLNLSEERNKSlailDEMRGSLEiRLAAALELKKTAEKEKKDKEDSALKALAEQEANMEKVVQESK 445
Cdd:PTZ00121 1400 ----AEEDKKKADELKKAAAAKKKA----DEAKKKAE-EKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAK 1470

                         170
                  ....*....|....
gi 334182264  446 L---LQQEAEENSK 456
Cdd:PTZ00121 1471 KadeAKKKAEEAKK 1484
DR0291 COG1579
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
 285-443 1.13e-03

Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];


Pssm-ID: 441187 [Multi-domain]  Cd Length: 236  Bit Score: 40.68  E-value: 1.13e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182264 285 VDQLEDIIEDAKSNKKNLLTEMETVTNIMREVELKEKDAEkskeeaarggldtlQKVEELKKMLEHAKEANDMHAGEvyG 364
Cdd:COG1579   33 LAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVE--------------ARIKKYEEQLGNVRNNKEYEALQ--K 96

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 334182264 365 EKSILATEVKELENRLLNLSEERNKSLAILDEMRGSLEiRLAAALELKKTAEKEKKDKEDSALKALAEQEANMEKVVQE 443
Cdd:COG1579   97 EIESLKRRISDLEDEILELMERIEELEEELAELEAELA-ELEAELEEKKAELDEELAELEAELEELEAEREELAAKIPP 174
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 284-458 1.84e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 41.46  E-value: 1.84e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182264 284 SVDQLEDIIEDAKSNKKNLLTEMETVTNIMREVELKEKDAEKSKEEAARGGLDTLQKVEELKKMLEHAKEandmhagevy 363
Cdd:COG1196  275 ELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEE---------- 344

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182264 364 gEKSILATEVKELENRLLNLSEERNKSLAILDEMRGSLEIRLAAALELKKTAEkEKKDKEDSALKALAEQEANMEKvvQE 443
Cdd:COG1196  345 -ELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAA-ELAAQLEELEEAEEALLERLER--LE 420

                        170
                 ....*....|....*
gi 334182264 444 SKLLQQEAEENSKLR 458
Cdd:COG1196  421 EELEELEEALAELEE 435
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 286-453 3.79e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 39.75  E-value: 3.79e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182264 286 DQLEDIIEDAKSNKKNLLTEMETVTNIMREVELKEKDAEKsKEEAARGGLDTLQK-VEELKKMLEHAKE--ANDMHAGEV 362
Cdd:COG4942   37 AELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQ-ELAALEAELAELEKeIAELRAELEAQKEelAELLRALYR 115

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182264 363 YGEKSIL-----ATEVKELENRLLNLSEERNKSLAILDEMRGSLEI------RLAAALELKKTAEKEKKDKEDSALKALA 431
Cdd:COG4942  116 LGRQPPLalllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAElaalraELEAERAELEALLAELEEERAALEALKA 195

                        170       180
                 ....*....|....*....|..
gi 334182264 432 EQEANMEKVVQESKLLQQEAEE 453
Cdd:COG4942  196 ERQKLLARLEKELAELAAELAE 217
PTZ00121 PTZ00121
MAEBL; Provisional
 313-456 3.96e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 40.51  E-value: 3.96e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182264  313 MREVELKEKDAEKSKEEAARGGldTLQKVEELKKmLEHAKEANDMHAGEvyGEKSILATEVKELEnrllnlsEERNKS-- 390
Cdd:PTZ00121 1557 LKKAEEKKKAEEAKKAEEDKNM--ALRKAEEAKK-AEEARIEEVMKLYE--EEKKMKAEEAKKAE-------EAKIKAee 1624

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 334182264  391 LAILDEMRGSLEIRLAAALELKKTAEKEKKDKEDSALKALAEQEANMEKVVQESKLLQQEAEENSK 456
Cdd:PTZ00121 1625 LKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKA 1690
PTZ00121 PTZ00121
MAEBL; Provisional
 286-459 5.56e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 39.74  E-value: 5.56e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182264  286 DQLEDIIED-AKSNKKNLLTEMETVTNIMREVELKEKDAEKSKEEAARggLDTLQKVEELKKmLEHAKEANDMHAGEVY- 363
Cdd:PTZ00121 1082 DAKEDNRADeATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARK--AEEARKAEDARK-AEEARKAEDAKRVEIAr 1158

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182264  364 -GEKSILATEVKELENRLLNLSEERNKSLAILDEMRGSLEIRLAaalELKKTAEKEKKDKEdsALKALAEQEANMEKVVQ 442
Cdd:PTZ00121 1159 kAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKA---EAARKAEEERKAEE--ARKAEDAKKAEAVKKAE 1233

                         170
                  ....*....|....*..
gi 334182264  443 ESKLLQQEAEENSKLRD 459
Cdd:PTZ00121 1234 EAKKDAEEAKKAEEERN 1250
tolA PRK09510
cell envelope integrity inner membrane protein TolA; Provisional
 317-461 7.07e-03

cell envelope integrity inner membrane protein TolA; Provisional


Pssm-ID: 236545 [Multi-domain]  Cd Length: 387  Bit Score: 39.02  E-value: 7.07e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182264 317 ELKEKDAEKSKEEAARGGLDTLQKVEE-LKKMLEHAKEANDMHAGEVYGEKSILATEVKELEnrllnlSEERNKSLAILD 395
Cdd:PRK09510 110 RLAAQEQKKQAEEAAKQAALKQKQAEEaAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKA------EAEAAKKAAAEA 183

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182264 396 EMRGSLEIRLAAALELKKTAEKE--KKDKEDSALKALAEQEANMEKVVQESK------------LLQQEAEENSKLRDFL 461
Cdd:PRK09510 184 KKKAEAEAAAKAAAEAKKKAEAEakKKAAAEAKKKAAAEAKAAAAKAAAEAKaaaekaaaakaaEKAAAAKAAAEVDDLF 263
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
301-492 9.00e-03

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 38.89  E-value: 9.00e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182264 301 NLLTEMETVTNIMREVeLKEKDAEKSKEEAARGGLDTLQKVEELKKMLEhAKEANDMHAGEVYGEKSILATEVKELENRL 380
Cdd:PRK03918 139 AILESDESREKVVRQI-LGLDDYENAYKNLGEVIKEIKRRIERLEKFIK-RTENIEELIKEKEKELEEVLREINEISSEL 216

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182264 381 LNLSEER---NKSLAILDEMRGSLEI--RLAAALELKKTAEKEKKDKEDSALKALAEQEANMEKVVQESKLLQQEAEENS 455
Cdd:PRK03918 217 PELREELeklEKEVKELEELKEEIEEleKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYI 296

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 334182264 456 KLRDFLMDRGQIVDTLQGEISVICQDVKLLKEKFENR 492
Cdd:PRK03918 297 KLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKEL 333
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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