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Conserved domains on  [gi|442629261|ref|NP_001261222|]
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hinge3, isoform B [Drosophila melanogaster]

Protein Classification

MADF and BESS domain-containing protein( domain architecture ID 10651986)

MADF and BESS domain-containing protein such as Drosophila protein 2d-2 that has been shown to interact with Bombyx mori NPV virus protein Bm8 which may play a role in regulation of gene expression.

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
MADF smart00595
subfamily of SANT domain;
14-60 4.10e-11

subfamily of SANT domain;


:

Pssm-ID: 214738  Cd Length: 89  Bit Score: 58.52  E-value: 4.10e-11
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 442629261    14 VELCRTKWKNLRCSYRRSNRRsgILKHQQSPSPGHQWSYAEAMSFLD 60
Cdd:smart00595  41 VEECKKRWKNLRDRYRRELKR--LQNGKSGGGKKSKWEYFDRLSFLR 85
BESS pfam02944
BESS motif; The BESS motif is named after the proteins in which it is found (BEAF, Suvar(3)7 ...
 209-243 3.85e-06

BESS motif; The BESS motif is named after the proteins in which it is found (BEAF, Suvar(3)7 and Stonewall). The motif is 40 amino acid residues long and is composed of two predicted alpha helices. Based on the protein in which it is found and the presence of conserved positively charged residues it is predicted to be a DNA binding domain. This domain appears to be specific to drosophila.


:

Pssm-ID: 460758  Cd Length: 35  Bit Score: 42.76  E-value: 3.85e-06
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 442629261  209 DSDYNYLISFLPLMKQMTPFQNVFFRAKMGELLLQ 243
Cdd:pfam02944   1 DSDDLFLLSLLPTMKRLPPKQKLKFKIKILQLLQE 35
 
Name Accession Description Interval E-value
MADF smart00595
subfamily of SANT domain;
14-60 4.10e-11

subfamily of SANT domain;


Pssm-ID: 214738  Cd Length: 89  Bit Score: 58.52  E-value: 4.10e-11
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 442629261    14 VELCRTKWKNLRCSYRRSNRRsgILKHQQSPSPGHQWSYAEAMSFLD 60
Cdd:smart00595  41 VEECKKRWKNLRDRYRRELKR--LQNGKSGGGKKSKWEYFDRLSFLR 85
MADF_DNA_bdg pfam10545
Alcohol dehydrogenase transcription factor Myb/SANT-like; The myb/SANT-like domain in Adf-1 ...
 14-59 2.43e-10

Alcohol dehydrogenase transcription factor Myb/SANT-like; The myb/SANT-like domain in Adf-1 (MADF) is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains.


Pssm-ID: 463144  Cd Length: 84  Bit Score: 56.14  E-value: 2.43e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 442629261   14 VELCRTKWKNLRCSYRRSNRRsgiLKHQQSPSPGHQWSYAEAMSFL 59
Cdd:pfam10545  42 VEDCKKRWKNLRDQYRRELRR---KRTNSGELYKSRWYYYEELSFL 84
BESS pfam02944
BESS motif; The BESS motif is named after the proteins in which it is found (BEAF, Suvar(3)7 ...
 209-243 3.85e-06

BESS motif; The BESS motif is named after the proteins in which it is found (BEAF, Suvar(3)7 and Stonewall). The motif is 40 amino acid residues long and is composed of two predicted alpha helices. Based on the protein in which it is found and the presence of conserved positively charged residues it is predicted to be a DNA binding domain. This domain appears to be specific to drosophila.


Pssm-ID: 460758  Cd Length: 35  Bit Score: 42.76  E-value: 3.85e-06
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 442629261  209 DSDYNYLISFLPLMKQMTPFQNVFFRAKMGELLLQ 243
Cdd:pfam02944   1 DSDDLFLLSLLPTMKRLPPKQKLKFKIKILQLLQE 35
 
Name Accession Description Interval E-value
MADF smart00595
subfamily of SANT domain;
14-60 4.10e-11

subfamily of SANT domain;


Pssm-ID: 214738  Cd Length: 89  Bit Score: 58.52  E-value: 4.10e-11
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 442629261    14 VELCRTKWKNLRCSYRRSNRRsgILKHQQSPSPGHQWSYAEAMSFLD 60
Cdd:smart00595  41 VEECKKRWKNLRDRYRRELKR--LQNGKSGGGKKSKWEYFDRLSFLR 85
MADF_DNA_bdg pfam10545
Alcohol dehydrogenase transcription factor Myb/SANT-like; The myb/SANT-like domain in Adf-1 ...
 14-59 2.43e-10

Alcohol dehydrogenase transcription factor Myb/SANT-like; The myb/SANT-like domain in Adf-1 (MADF) is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains.


Pssm-ID: 463144  Cd Length: 84  Bit Score: 56.14  E-value: 2.43e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 442629261   14 VELCRTKWKNLRCSYRRSNRRsgiLKHQQSPSPGHQWSYAEAMSFL 59
Cdd:pfam10545  42 VEDCKKRWKNLRDQYRRELRR---KRTNSGELYKSRWYYYEELSFL 84
BESS pfam02944
BESS motif; The BESS motif is named after the proteins in which it is found (BEAF, Suvar(3)7 ...
 209-243 3.85e-06

BESS motif; The BESS motif is named after the proteins in which it is found (BEAF, Suvar(3)7 and Stonewall). The motif is 40 amino acid residues long and is composed of two predicted alpha helices. Based on the protein in which it is found and the presence of conserved positively charged residues it is predicted to be a DNA binding domain. This domain appears to be specific to drosophila.


Pssm-ID: 460758  Cd Length: 35  Bit Score: 42.76  E-value: 3.85e-06
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 442629261  209 DSDYNYLISFLPLMKQMTPFQNVFFRAKMGELLLQ 243
Cdd:pfam02944   1 DSDDLFLLSLLPTMKRLPPKQKLKFKIKILQLLQE 35
Myb_DNA-bind_4 pfam13837
Myb/SANT-like DNA-binding domain; This presumed domain appears to be related to other Myb ...
 1-34 7.79e-03

Myb/SANT-like DNA-binding domain; This presumed domain appears to be related to other Myb/SANT-like DNA binding domains. In particular pfam10545 seems most related. This family is greatly expanded in plants and appears in several proteins annotated as transposon proteins.


Pssm-ID: 463994  Cd Length: 84  Bit Score: 34.93  E-value: 7.79e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 442629261    1 MSALNPQKSwhygVELCRTKWKNLRCSYRRSNRR 34
Cdd:pfam13837  42 MAELGYNRS----PEQCKEKWENLKKKYRKEKEG 71
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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