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Conserved domains on  [gi|665390535|ref|NP_001285074|]
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ATP synthase, delta subunit, isoform C [Drosophila melanogaster]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
F1-ATPase_delta cd12152
mitochondrial ATP synthase delta subunit; The F-ATPase is found in bacterial plasma membranes, ...
 27-141 1.32e-33

mitochondrial ATP synthase delta subunit; The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta, and epsilon subunits with a stoichiometry of 3:3:1:1:1. Alpha and beta subunit form the globular catalytic moiety, a hexameric ring of alternating subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton translocating domain. In bacteria, which is lacking a eukaryotic epsilon subunit homolog, this subunit is called the epsilon subunit.


:

Pssm-ID: 213395 [Multi-domain]  Cd Length: 123  Bit Score: 114.53  E-value: 1.32e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665390535  27 MKLTFAAANKTFYDAAVvRQIDVPSFSGSFGILAKHVPTLAVLKPGVVQVVENDGKTLKFFVSSGSVTVNEDsSVQVLAE 106
Cdd:cd12152    1 LKLEIVTPERVFFSGEV-ESVVLPGTEGEFGILPGHAPLVTALKPGVLRIRDEDGEEKYFAVSGGFLEVTPN-RVTILAD 78

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 665390535 107 EAHNIEDIDANEARQLLAKYQSQLSSAGDDKAKAQ 141
Cdd:cd12152   79 EAERPEDIDVERAEEALERAEERLAQAKDEREKAR 113
 
Name Accession Description Interval E-value
F1-ATPase_delta cd12152
mitochondrial ATP synthase delta subunit; The F-ATPase is found in bacterial plasma membranes, ...
 27-141 1.32e-33

mitochondrial ATP synthase delta subunit; The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta, and epsilon subunits with a stoichiometry of 3:3:1:1:1. Alpha and beta subunit form the globular catalytic moiety, a hexameric ring of alternating subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton translocating domain. In bacteria, which is lacking a eukaryotic epsilon subunit homolog, this subunit is called the epsilon subunit.


Pssm-ID: 213395 [Multi-domain]  Cd Length: 123  Bit Score: 114.53  E-value: 1.32e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665390535  27 MKLTFAAANKTFYDAAVvRQIDVPSFSGSFGILAKHVPTLAVLKPGVVQVVENDGKTLKFFVSSGSVTVNEDsSVQVLAE 106
Cdd:cd12152    1 LKLEIVTPERVFFSGEV-ESVVLPGTEGEFGILPGHAPLVTALKPGVLRIRDEDGEEKYFAVSGGFLEVTPN-RVTILAD 78

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 665390535 107 EAHNIEDIDANEARQLLAKYQSQLSSAGDDKAKAQ 141
Cdd:cd12152   79 EAERPEDIDVERAEEALERAEERLAQAKDEREKAR 113
AtpC COG0355
FoF1-type ATP synthase, epsilon subunit [Energy production and conversion]; FoF1-type ATP ...
 27-157 4.87e-25

FoF1-type ATP synthase, epsilon subunit [Energy production and conversion]; FoF1-type ATP synthase, epsilon subunit is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440124 [Multi-domain]  Cd Length: 131  Bit Score: 92.94  E-value: 4.87e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665390535  27 MKLTFAAANKTFYDAAVVRqIDVPSFSGSFGILAKHVPTLAVLKPGVVQVVENDGKTLKFFVSSGSVTVNEDsSVQVLAE 106
Cdd:COG0355    1 LKLEIVTPERVLFSGEVES-VVAPGAEGEFGILPGHAPLLTALKPGVVRIRTEDGEEEYFAVSGGFLEVQPN-KVTILAD 78

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 665390535 107 EAHNIEDIDANEARQLLAKYQSQLSSAGDDKAKAQAAIAVEVAEALVKAAE 157
Cdd:COG0355   79 TAERAEDIDVERAEEAKERAEERLEEAKDDIDYARAEAALARALARLRAAE 129
ATP-synt_DE_N pfam02823
ATP synthase, Delta/Epsilon chain, beta-sandwich domain; Part of the ATP synthase CF(1). These ...
 27-108 6.76e-19

ATP synthase, Delta/Epsilon chain, beta-sandwich domain; Part of the ATP synthase CF(1). These subunits are part of the head unit of the ATP synthase. The subunit is called epsilon in bacteria and delta in mitochondria. In bacteria the delta (D) subunit is equivalent to the mitochondrial Oligomycin sensitive subunit, OSCP (pfam00213).


Pssm-ID: 460714 [Multi-domain]  Cd Length: 80  Bit Score: 75.94  E-value: 6.76e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665390535   27 MKLTFAAANKTFYDAAVVRqIDVPSFSGSFGILAKHVPTLAVLKPGVVQVVENDGKTLKFFVSSGSVTVNEDsSVQVLAE 106
Cdd:pfam02823   1 LKLEIVTPERVVFSGEVEM-VVAPGAEGELGILPGHAPLLTALKPGVLRIKTEDGEEEYIAVSGGFLEVQPN-KVTILAD 78


                  ..
gi 665390535  107 EA 108
Cdd:pfam02823  79 SA 80
atpC PRK00571
F0F1 ATP synthase subunit epsilon; Validated
 25-141 3.55e-18

F0F1 ATP synthase subunit epsilon; Validated


Pssm-ID: 234796 [Multi-domain]  Cd Length: 135  Bit Score: 75.57  E-value: 3.55e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665390535  25 DEMKLTFAAANKTFYDAAVvRQIDVPSFSGSFGILAKHVPTLAVLKPGVVQVVENDGKTLKFFVSSGSVTVNEDsSVQVL 104
Cdd:PRK00571   2 ATLTVDIVSPEGLIYSGEV-EEVVVPGTEGELGILPGHAPLLTALKPGVVRIKKDDGEEEVIAVSGGFLEVQPD-KVTVL 79

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 665390535 105 AEEAHNIEDIDANEARQLLAKYQSQLSSAGDDKAKAQ 141
Cdd:PRK00571  80 ADSAERADDIDEARAEEAKERAEEALENKHDDVDYAR 116
ATP_synt_epsi TIGR01216
ATP synthase, F1 epsilon subunit (delta in mitochondria); This model describes one of the five ...
 27-157 3.21e-17

ATP synthase, F1 epsilon subunit (delta in mitochondria); This model describes one of the five types of subunits in the F1 part of F1/F0 ATP synthases. Members of this family are designated epsilon in bacterial and chloroplast systems but designated delta in mitochondria, where the counterpart of the bacterial delta subunit is designated OSCP. In a few cases (Propionigenium modestum, Acetobacterium woodii) scoring above the trusted cutoff and designated here as exceptions, Na+ replaces H+ for translocation. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273506 [Multi-domain]  Cd Length: 130  Bit Score: 73.06  E-value: 3.21e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665390535   27 MKLTFAAANKTFYDAAVvRQIDVPSFSGSFGILAKHVPTLAVLKPGVVQVVENDGKTLKFFVSSGSVTVNEDsSVQVLAE 106
Cdd:TIGR01216   2 LKLEIVTPEGEIYSGEV-ESVILPGSEGELGILPGHAPLITALKPGVVRIRKLGDDWEHIAVSGGFAEVQPD-KVTILAD 79

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 665390535  107 EAHNIEDIDANEARQLLAKYQSQLSSAGDDKAKAQAAIAVEVAEALVKAAE 157
Cdd:TIGR01216  80 GAVFADDIDEAEAEKALEAAEKLLESAEDDKDLAEALLKLKKARAQLEALE 130
 
Name Accession Description Interval E-value
F1-ATPase_delta cd12152
mitochondrial ATP synthase delta subunit; The F-ATPase is found in bacterial plasma membranes, ...
 27-141 1.32e-33

mitochondrial ATP synthase delta subunit; The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta, and epsilon subunits with a stoichiometry of 3:3:1:1:1. Alpha and beta subunit form the globular catalytic moiety, a hexameric ring of alternating subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton translocating domain. In bacteria, which is lacking a eukaryotic epsilon subunit homolog, this subunit is called the epsilon subunit.


Pssm-ID: 213395 [Multi-domain]  Cd Length: 123  Bit Score: 114.53  E-value: 1.32e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665390535  27 MKLTFAAANKTFYDAAVvRQIDVPSFSGSFGILAKHVPTLAVLKPGVVQVVENDGKTLKFFVSSGSVTVNEDsSVQVLAE 106
Cdd:cd12152    1 LKLEIVTPERVFFSGEV-ESVVLPGTEGEFGILPGHAPLVTALKPGVLRIRDEDGEEKYFAVSGGFLEVTPN-RVTILAD 78

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 665390535 107 EAHNIEDIDANEARQLLAKYQSQLSSAGDDKAKAQ 141
Cdd:cd12152   79 EAERPEDIDVERAEEALERAEERLAQAKDEREKAR 113
AtpC COG0355
FoF1-type ATP synthase, epsilon subunit [Energy production and conversion]; FoF1-type ATP ...
 27-157 4.87e-25

FoF1-type ATP synthase, epsilon subunit [Energy production and conversion]; FoF1-type ATP synthase, epsilon subunit is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440124 [Multi-domain]  Cd Length: 131  Bit Score: 92.94  E-value: 4.87e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665390535  27 MKLTFAAANKTFYDAAVVRqIDVPSFSGSFGILAKHVPTLAVLKPGVVQVVENDGKTLKFFVSSGSVTVNEDsSVQVLAE 106
Cdd:COG0355    1 LKLEIVTPERVLFSGEVES-VVAPGAEGEFGILPGHAPLLTALKPGVVRIRTEDGEEEYFAVSGGFLEVQPN-KVTILAD 78

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 665390535 107 EAHNIEDIDANEARQLLAKYQSQLSSAGDDKAKAQAAIAVEVAEALVKAAE 157
Cdd:COG0355   79 TAERAEDIDVERAEEAKERAEERLEEAKDDIDYARAEAALARALARLRAAE 129
ATP-synt_DE_N pfam02823
ATP synthase, Delta/Epsilon chain, beta-sandwich domain; Part of the ATP synthase CF(1). These ...
 27-108 6.76e-19

ATP synthase, Delta/Epsilon chain, beta-sandwich domain; Part of the ATP synthase CF(1). These subunits are part of the head unit of the ATP synthase. The subunit is called epsilon in bacteria and delta in mitochondria. In bacteria the delta (D) subunit is equivalent to the mitochondrial Oligomycin sensitive subunit, OSCP (pfam00213).


Pssm-ID: 460714 [Multi-domain]  Cd Length: 80  Bit Score: 75.94  E-value: 6.76e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665390535   27 MKLTFAAANKTFYDAAVVRqIDVPSFSGSFGILAKHVPTLAVLKPGVVQVVENDGKTLKFFVSSGSVTVNEDsSVQVLAE 106
Cdd:pfam02823   1 LKLEIVTPERVVFSGEVEM-VVAPGAEGELGILPGHAPLLTALKPGVLRIKTEDGEEEYIAVSGGFLEVQPN-KVTILAD 78


                  ..
gi 665390535  107 EA 108
Cdd:pfam02823  79 SA 80
atpC PRK00571
F0F1 ATP synthase subunit epsilon; Validated
 25-141 3.55e-18

F0F1 ATP synthase subunit epsilon; Validated


Pssm-ID: 234796 [Multi-domain]  Cd Length: 135  Bit Score: 75.57  E-value: 3.55e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665390535  25 DEMKLTFAAANKTFYDAAVvRQIDVPSFSGSFGILAKHVPTLAVLKPGVVQVVENDGKTLKFFVSSGSVTVNEDsSVQVL 104
Cdd:PRK00571   2 ATLTVDIVSPEGLIYSGEV-EEVVVPGTEGELGILPGHAPLLTALKPGVVRIKKDDGEEEVIAVSGGFLEVQPD-KVTVL 79

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 665390535 105 AEEAHNIEDIDANEARQLLAKYQSQLSSAGDDKAKAQ 141
Cdd:PRK00571  80 ADSAERADDIDEARAEEAKERAEEALENKHDDVDYAR 116
ATP_synt_epsi TIGR01216
ATP synthase, F1 epsilon subunit (delta in mitochondria); This model describes one of the five ...
 27-157 3.21e-17

ATP synthase, F1 epsilon subunit (delta in mitochondria); This model describes one of the five types of subunits in the F1 part of F1/F0 ATP synthases. Members of this family are designated epsilon in bacterial and chloroplast systems but designated delta in mitochondria, where the counterpart of the bacterial delta subunit is designated OSCP. In a few cases (Propionigenium modestum, Acetobacterium woodii) scoring above the trusted cutoff and designated here as exceptions, Na+ replaces H+ for translocation. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273506 [Multi-domain]  Cd Length: 130  Bit Score: 73.06  E-value: 3.21e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665390535   27 MKLTFAAANKTFYDAAVvRQIDVPSFSGSFGILAKHVPTLAVLKPGVVQVVENDGKTLKFFVSSGSVTVNEDsSVQVLAE 106
Cdd:TIGR01216   2 LKLEIVTPEGEIYSGEV-ESVILPGSEGELGILPGHAPLITALKPGVVRIRKLGDDWEHIAVSGGFAEVQPD-KVTILAD 79

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 665390535  107 EAHNIEDIDANEARQLLAKYQSQLSSAGDDKAKAQAAIAVEVAEALVKAAE 157
Cdd:TIGR01216  80 GAVFADDIDEAEAEKALEAAEKLLESAEDDKDLAEALLKLKKARAQLEALE 130
atpC PRK13450
F0F1 ATP synthase subunit epsilon; Provisional
 24-121 2.68e-14

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 184059 [Multi-domain]  Cd Length: 132  Bit Score: 65.55  E-value: 2.68e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665390535  24 SDEMKLTFAAANKTFYDAAVVRQIdVPSFSGSFGILAKHVPTLAVLKPGVVQVVENDGKTLKFFVSSGSVTVNeDSSVQV 103
Cdd:PRK13450   1 ANNIKLTILTPEKNFYIGEVKEVI-TEGLDGDIAILPNHVPLITYLKPTITKIIDENGEKKKIFTSSGVLKVE-NNEVYI 78

                         90       100
                 ....*....|....*....|.
gi 665390535 104 LAEEAHNIEDID---ANEARQ 121
Cdd:PRK13450  79 LCDASEWPEEIDikrAENAKK 99
atpC PRK13446
F0F1 ATP synthase subunit epsilon; Provisional
 44-141 2.08e-12

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 184056 [Multi-domain]  Cd Length: 136  Bit Score: 60.36  E-value: 2.08e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665390535  44 VRQIDVPSFSGSFGILAKHVPTLAVLKPGVVQVVEnDGKTLKFFVSSGSVTVnEDSSVQVLAEEAHNIEDIDANEARQLL 123
Cdd:PRK13446  21 VDEVGAPGVLGEFGVLPGHAPFLTALKIGELTYKK-GGKTHYVAVNGGFAEV-SNNKVTVLAETAERAEEIDVERARAAL 98

                         90       100
                 ....*....|....*....|
gi 665390535 124 AKYQSQLSSAG--DDKAKAQ 141
Cdd:PRK13446  99 ERAEQRLKKLTpeDDSARAE 118
atpC PRK13448
F0F1 ATP synthase subunit epsilon; Provisional
 44-140 5.50e-11

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 139579 [Multi-domain]  Cd Length: 135  Bit Score: 56.71  E-value: 5.50e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665390535  44 VRQIDVPSFSGSFGILAKHVPTLAVLKPGVVQVVENdGKTLKFFVSSGSVTVNEdSSVQVLAEEAHNIEDIDANEARQLL 123
Cdd:PRK13448  20 VDQVDIPGVEGDFGVLAGHAPVVAVIRPGILTVTAG-GNQQKIVVLGGLAEVSE-KGLTVLADVATSVADLDLAQFAATI 97

                         90
                 ....*....|....*...
gi 665390535 124 AKYQSQLSS-AGDDKAKA 140
Cdd:PRK13448  98 AEMEAQLAGkVGDELDRA 115
atpC PRK13442
F0F1 ATP synthase subunit epsilon; Provisional
 49-112 2.28e-10

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 184055 [Multi-domain]  Cd Length: 89  Bit Score: 53.87  E-value: 2.28e-10
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 665390535  49 VPSFSGSFGILAKHVPTLAVLKPGVVQVVENDGKTLKFFVSSGSVTVnEDSSVQVLAEEAHNIE 112
Cdd:PRK13442  27 ARTTEGDIGILPGHEPLLGVLESGTVTVVTPGGERISAAVDGGFISF-DSNKLTVLAERAELVA 89
atpE CHL00063
ATP synthase CF1 epsilon subunit
 27-139 1.12e-09

ATP synthase CF1 epsilon subunit


Pssm-ID: 214351 [Multi-domain]  Cd Length: 134  Bit Score: 53.33  E-value: 1.12e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665390535  27 MKLTFAAANKTFYDAAVvRQIDVPSFSGSFGILAKHVPTLAVLKPGVVQVVENDGKTLkfFVSSGSVTVNEDSSVQVLAE 106
Cdd:CHL00063   3 LNLRVLTPNRIVWDSEV-EEIILPTNSGQIGVLPNHAPIATALDIGVLRIRLNDQWLT--MALMGGFARIGNNEITILVN 79

                         90       100       110
                 ....*....|....*....|....*....|...
gi 665390535 107 EAHNIEDIDANEARQLLAKYQSQLSSAGDDKAK 139
Cdd:CHL00063  80 DAEKGSDIDPQEAQQTLEIAEANLEKAEGKKQK 112
atpC PRK13449
ATP synthase F1 subunit epsilon;
44-108 3.13e-09

ATP synthase F1 subunit epsilon;


Pssm-ID: 184058 [Multi-domain]  Cd Length: 88  Bit Score: 50.93  E-value: 3.13e-09
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 665390535  44 VRQIDVPSFSGSFGILAKHVPTLAVLKPGVVQVVENDGKTLKFF-VSSGSVTVNEDsSVQVLAEEA 108
Cdd:PRK13449  20 VDMVVVPGTEGDFGVLAGHAPFMTTLREGEVTVYSSDGAAPEVFhVQGGFAEVNEK-GLTILAEHA 84
atpC PRK14735
F0F1 ATP synthase subunit epsilon; Provisional
 44-129 7.85e-08

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 173197 [Multi-domain]  Cd Length: 139  Bit Score: 48.46  E-value: 7.85e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665390535  44 VRQIDVPSFSGSFGILAKHVPTLAVLKPGVVQVVENdGKTLKFFVSSGSVTVNEDsSVQVLAEEAHNIEDIDanEARQLL 123
Cdd:PRK14735  19 VDMISAPTKDGRVGILPRHAPLLTILEPGELDIVKN-GVRTPFAISGGFMEVLPH-RVTILADTAERADEID--EARAEQ 94


                 ....*.
gi 665390535 124 AKYQSQ 129
Cdd:PRK14735  95 ARAEAE 100
atpC PRK13444
F0F1 ATP synthase subunit epsilon; Provisional
 23-125 1.11e-06

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 139576 [Multi-domain]  Cd Length: 127  Bit Score: 45.25  E-value: 1.11e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665390535  23 YSDEMKLTFAAANKTFYDAAVVRQIdVPSFSGSFGILAKHVPTLAVLKPGVVQvVENDGKTLKFFVSSGSVTVnEDSSVQ 102
Cdd:PRK13444   2 MAKKLTVSVISPEKILYKGEVDSLI-VPGSEGFFGILPNHAPLVATLGIGLLE-IRKGEKLKRISVEGGFCEV-KDNQIS 78

                         90       100
                 ....*....|....*....|...
gi 665390535 103 VLAEEAHNIEDIDANEARQLLAK 125
Cdd:PRK13444  79 ILTDHGALKEDIDHEHEKKLLAE 101
PRK13447 PRK13447
F0F1 ATP synthase subunit epsilon; Provisional
 27-134 2.86e-06

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 184057 [Multi-domain]  Cd Length: 136  Bit Score: 44.23  E-value: 2.86e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665390535  27 MKLTFAAANKTFYDAAVVRQIDVPSFSGSFGILAKHVPTLAVLKPGVVQVVENDGKTLKFFVSSGSVTVNEDSSVQVLAE 106
Cdd:PRK13447   1 LRLTIATPLAVVVDELDIVSLRAEDASGGFGILPGHADFLTVLRASVVRWRRADGATHYCAVRGGVLRVTGGARVEIACR 80

                         90       100
                 ....*....|....*....|....*...
gi 665390535 107 EAHNIEDIDANEArQLLAKYQSQLSSAG 134
Cdd:PRK13447  81 EAVLGEDLARLEA-VVRAVRAAQLDAAR 107
atpC PRK01474
F0F1 ATP synthase subunit epsilon; Validated
 45-131 5.52e-06

F0F1 ATP synthase subunit epsilon; Validated


Pssm-ID: 100879  Cd Length: 112  Bit Score: 42.94  E-value: 5.52e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665390535  45 RQIDVPSFSGSFGILAKHVPTLAVLKPGVVQV-VENDGKTLKFFVSSGSVTVNEDSSVQVLAEEAHNIEDIDANEARQLL 123
Cdd:PRK01474  22 KMVTMPGEEGMFGVLPSHVPMIVSLKAGLVQVyIDDMHKSENTYLISGGVTEVTGNYINIATETAINVTNLSEAEIATKL 101


                 ....*...
gi 665390535 124 AKYQSQLS 131
Cdd:PRK01474 102 LDLQKTLS 109
atpC PRK14736
F0F1 ATP synthase subunit epsilon; Provisional
 31-114 8.94e-06

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 173198 [Multi-domain]  Cd Length: 133  Bit Score: 42.86  E-value: 8.94e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665390535  31 FAAANKTFYDAAVvRQIDVPSFSGSFGILAKHVPTLAVLKPGVVQVVENDGKTLKFFVSSGSVTVNEdSSVQVLAEEAHN 110
Cdd:PRK14736   8 LVGPERTLYSGEV-EAVQLPGSEGEMTVLPGHAPVLTTLKVGVITVTETTGNGKRIYVRGGFAEIGP-TSVTVLAERAAP 85


                 ....
gi 665390535 111 IEDI 114
Cdd:PRK14736  86 VEEL 89
atpC PRK13443
F0F1 ATP synthase subunit epsilon; Provisional
 44-139 1.08e-05

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 237388 [Multi-domain]  Cd Length: 136  Bit Score: 42.60  E-value: 1.08e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665390535  44 VRQIDVPSFSGSFGILAKHVPTLAVLKPGVVQVVENDGkTLKFFVSSGSVTVNEDsSVQVLAEEAHNIE-----DIDA-- 116
Cdd:PRK13443  21 ATAVQIPGADGDMTAMEGHAPTITTLRPGILRAHGPSG-TQEYAVTGGFAEINAT-SISVLAEKAIPVEeltgaVLDEfi 98

                         90       100
                 ....*....|....*....|....
gi 665390535 117 NEARQLLAKYQSQLS-SAGDDKAK 139
Cdd:PRK13443  99 AEARELASVALPENEpGDVDDAAK 122
alt_F1F0_F1_eps TIGR03166
alternate F1F0 ATPase, F1 subunit epsilon; A small number of taxonomically diverse prokaryotic ...
 28-108 6.51e-04

alternate F1F0 ATPase, F1 subunit epsilon; A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 epsilon subunit of this apparent second ATP synthase.


Pssm-ID: 132210 [Multi-domain]  Cd Length: 122  Bit Score: 37.33  E-value: 6.51e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665390535   28 KLTFAAANKTFYDAAVVRQIDVPSFSGSFGILAKHVPTLAVLKPGVVQVVENDGKTLKFFVSSGsVTVNEDSSVQVLAEE 107
Cdd:TIGR03166   1 RLKILTPFRVFLDKLPVTRIVAETESGSFGLLPGHVDCVAALVPGILIYETADGGEHYVAVDQG-ILVKRGADVEVSVRN 79


                  .
gi 665390535  108 A 108
Cdd:TIGR03166  80 A 80
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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