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Conserved domains on  [gi|665393481|ref|NP_001287218|]
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uncharacterized protein Dmel_CG2846, isoform B [Drosophila melanogaster]

Protein Classification

riboflavin kinase( domain architecture ID 10483779)

riboflavin kinase catalyzes the phosphorylation of riboflavin (vitamin B2) to form flavin-mononucleotide (FMN), and hence, is the rate-limiting enzyme in the synthesis of FAD

CATH:  2.40.30.30
EC:  2.7.1.26
Gene Ontology:  GO:0008531|GO:0009231|GO:0046872|GO:0005524
PubMed:  19641494|14580199
SCOP:  4002669

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Flavokinase pfam01687
Riboflavin kinase; This family represents the C-terminal region of the bifunctional riboflavin ...
 6-131 1.83e-55

Riboflavin kinase; This family represents the C-terminal region of the bifunctional riboflavin biosynthesis protein known as RibC in Bacillus subtilis. The RibC protein from Bacillus subtilis has both flavokinase and flavin adenine dinucleotide synthetase (FAD-synthetase) activities. RibC plays an essential role in the flavin metabolism. This domain is thought to have kinase activity.


:

Pssm-ID: 460295 [Multi-domain]  Cd Length: 123  Bit Score: 169.87  E-value: 1.83e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665393481    6 PLFAGGEIVRGFGRGsKELGIPTANFPLEVvKSLPeslPTGAYYGWANVDNGPVHKMVLSIGWNPFYNNKEKSVETHMLh 85
Cdd:pfam01687   4 PYSISGKVVHGDGRG-RTLGFPTANLPLPE-KLLP---ANGVYAVWVRVDGGKVYPGVANIGTNPTFGNGKLTVEVHIL- 77

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 665393481   86 DFNCDLYGQTLKICIVGYLRPERSFDSLESLIAAIRGDIEQAKAFL 131
Cdd:pfam01687  78 DFDGDLYGKEIRVEFLGFLRPEKKFDSLEALKAQIKKDIEQARAIL 123
 
Name Accession Description Interval E-value
Flavokinase pfam01687
Riboflavin kinase; This family represents the C-terminal region of the bifunctional riboflavin ...
 6-131 1.83e-55

Riboflavin kinase; This family represents the C-terminal region of the bifunctional riboflavin biosynthesis protein known as RibC in Bacillus subtilis. The RibC protein from Bacillus subtilis has both flavokinase and flavin adenine dinucleotide synthetase (FAD-synthetase) activities. RibC plays an essential role in the flavin metabolism. This domain is thought to have kinase activity.


Pssm-ID: 460295 [Multi-domain]  Cd Length: 123  Bit Score: 169.87  E-value: 1.83e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665393481    6 PLFAGGEIVRGFGRGsKELGIPTANFPLEVvKSLPeslPTGAYYGWANVDNGPVHKMVLSIGWNPFYNNKEKSVETHMLh 85
Cdd:pfam01687   4 PYSISGKVVHGDGRG-RTLGFPTANLPLPE-KLLP---ANGVYAVWVRVDGGKVYPGVANIGTNPTFGNGKLTVEVHIL- 77

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 665393481   86 DFNCDLYGQTLKICIVGYLRPERSFDSLESLIAAIRGDIEQAKAFL 131
Cdd:pfam01687  78 DFDGDLYGKEIRVEFLGFLRPEKKFDSLEALKAQIKKDIEQARAIL 123
PLN02940 PLN02940
riboflavin kinase
 6-149 3.10e-53

riboflavin kinase


Pssm-ID: 178528 [Multi-domain]  Cd Length: 382  Bit Score: 172.33  E-value: 3.10e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665393481   6 PLFAGGEIVRGFGRGSKELGIPTANFPLEVVKSLPESLPTGAYYGWANVDNGPVHKMVLSIGWNPFYNNKEKSVETHMLH 85
Cdd:PLN02940 238 PWHIGGPVIKGFGRGSKVLGIPTANLSTENYSDVLSEHPSGVYFGWAGLSTRGVYKMVMSIGWNPYFNNTEKTIEPWLLH 317

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 665393481  86 DFNCDLYGQTLKICIVGYLRPERSFDSLESLIAAIRGDIEQAKAFLDEADKAKLKEAPFFTEKL 149
Cdd:PLN02940 318 DFGEDFYGEELRLVIVGYIRPEANFPSLESLIAKIHEDRRIAEKALDLPLYAKYKDDPYLTNSL 381
Flavokinase smart00904
Riboflavin kinase; Riboflavin is converted into catalytically active cofactors (FAD and FMN) ...
 6-132 1.09e-46

Riboflavin kinase; Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase, which converts it into FMN, and FAD synthetase, which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme. the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases. This entry represents riboflavin kinase, which occurs as part of a bifunctional enzyme or a stand-alone enzyme.


Pssm-ID: 214901 [Multi-domain]  Cd Length: 124  Bit Score: 147.58  E-value: 1.09e-46
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665393481     6 PLFAGGEIVRGFGRGSKeLGIPTANFPLEVVKSLPeslPTGAYYGWANVDNGPvHKMVLSIGWNPfYNNKEKSVETHMLh 85
Cdd:smart00904   5 PYSISGRVVHGDKRGRT-LGFPTANLPLDDRLLLP---KNGVYAVRVRVDGKI-YPGVANIGTRP-TFGGDRSVEVHIL- 77

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*..
gi 665393481    86 DFNCDLYGQTLKICIVGYLRPERSFDSLESLIAAIRGDIEQAKAFLD 132
Cdd:smart00904  78 DFSGDLYGEEIEVEFLKFIRDEQKFDSLDELKAQISRDIEEAREYLA 124
RibF COG0196
FAD synthase [Coenzyme transport and metabolism]; FAD synthase is part of the Pathway ...
 11-133 6.80e-38

FAD synthase [Coenzyme transport and metabolism]; FAD synthase is part of the Pathway/BioSystem: Riboflavin/FAD biosynthesis


Pssm-ID: 439966 [Multi-domain]  Cd Length: 310  Bit Score: 130.93  E-value: 6.80e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665393481  11 GEIVRGFGRGsKELGIPTANFPLEVVKSLPeslPTGAYYGWANVDNGPvHKMVLSIGWNPFYNNKEKSVETHMLhDFNCD 90
Cdd:COG0196  192 GRVVHGDKRG-RTLGFPTANLALPEEKLLP---ADGVYAVRVRIDGRR-YPGVANIGTRPTFDGGEPTLEVHLL-DFDGD 265

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 665393481  91 LYGQTLKICIVGYLRPERSFDSLESLIAAIRGDIEQAKAFLDE 133
Cdd:COG0196  266 LYGKEIEVEFLKRLRDEKKFDSLEALKAQIAKDVEQARAILAK 308
ribF TIGR00083
riboflavin kinase/FMN adenylyltransferase; multifunctional enzyme: riboflavin kinase (EC 2.7.1. ...
 6-131 1.66e-23

riboflavin kinase/FMN adenylyltransferase; multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase). [Biosynthesis of cofactors, prosthetic groups, and carriers, Riboflavin, FMN, and FAD]


Pssm-ID: 272898 [Multi-domain]  Cd Length: 288  Bit Score: 92.89  E-value: 1.66e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665393481    6 PLFAGGEIVRGFGRGSKeLGIPTANFPLEVVKSLPeslPTGAYYGWANVdNGPVHKMVLSIGWNPFYNNKEKSVETHMLh 85
Cdd:TIGR00083 168 PYFICGTVIHGQKLGRT-LGFPTANIKLKNQVLPL---KGGYYVVVVLL-NGEPYPGVGNIGNRPTFIGQQLVIEVHLL- 241

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 665393481   86 DFNCDLYGQTLKICIVGYLRPERSFDSLESLIAAIRGDIEQAKAFL 131
Cdd:TIGR00083 242 DFSGELYGQEIKVTLVKKIRPEQKFSSLDELKNQIQQDILQAKKWF 287
 
Name Accession Description Interval E-value
Flavokinase pfam01687
Riboflavin kinase; This family represents the C-terminal region of the bifunctional riboflavin ...
 6-131 1.83e-55

Riboflavin kinase; This family represents the C-terminal region of the bifunctional riboflavin biosynthesis protein known as RibC in Bacillus subtilis. The RibC protein from Bacillus subtilis has both flavokinase and flavin adenine dinucleotide synthetase (FAD-synthetase) activities. RibC plays an essential role in the flavin metabolism. This domain is thought to have kinase activity.


Pssm-ID: 460295 [Multi-domain]  Cd Length: 123  Bit Score: 169.87  E-value: 1.83e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665393481    6 PLFAGGEIVRGFGRGsKELGIPTANFPLEVvKSLPeslPTGAYYGWANVDNGPVHKMVLSIGWNPFYNNKEKSVETHMLh 85
Cdd:pfam01687   4 PYSISGKVVHGDGRG-RTLGFPTANLPLPE-KLLP---ANGVYAVWVRVDGGKVYPGVANIGTNPTFGNGKLTVEVHIL- 77

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 665393481   86 DFNCDLYGQTLKICIVGYLRPERSFDSLESLIAAIRGDIEQAKAFL 131
Cdd:pfam01687  78 DFDGDLYGKEIRVEFLGFLRPEKKFDSLEALKAQIKKDIEQARAIL 123
PLN02940 PLN02940
riboflavin kinase
 6-149 3.10e-53

riboflavin kinase


Pssm-ID: 178528 [Multi-domain]  Cd Length: 382  Bit Score: 172.33  E-value: 3.10e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665393481   6 PLFAGGEIVRGFGRGSKELGIPTANFPLEVVKSLPESLPTGAYYGWANVDNGPVHKMVLSIGWNPFYNNKEKSVETHMLH 85
Cdd:PLN02940 238 PWHIGGPVIKGFGRGSKVLGIPTANLSTENYSDVLSEHPSGVYFGWAGLSTRGVYKMVMSIGWNPYFNNTEKTIEPWLLH 317

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 665393481  86 DFNCDLYGQTLKICIVGYLRPERSFDSLESLIAAIRGDIEQAKAFLDEADKAKLKEAPFFTEKL 149
Cdd:PLN02940 318 DFGEDFYGEELRLVIVGYIRPEANFPSLESLIAKIHEDRRIAEKALDLPLYAKYKDDPYLTNSL 381
Flavokinase smart00904
Riboflavin kinase; Riboflavin is converted into catalytically active cofactors (FAD and FMN) ...
 6-132 1.09e-46

Riboflavin kinase; Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase, which converts it into FMN, and FAD synthetase, which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme. the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases. This entry represents riboflavin kinase, which occurs as part of a bifunctional enzyme or a stand-alone enzyme.


Pssm-ID: 214901 [Multi-domain]  Cd Length: 124  Bit Score: 147.58  E-value: 1.09e-46
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665393481     6 PLFAGGEIVRGFGRGSKeLGIPTANFPLEVVKSLPeslPTGAYYGWANVDNGPvHKMVLSIGWNPfYNNKEKSVETHMLh 85
Cdd:smart00904   5 PYSISGRVVHGDKRGRT-LGFPTANLPLDDRLLLP---KNGVYAVRVRVDGKI-YPGVANIGTRP-TFGGDRSVEVHIL- 77

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*..
gi 665393481    86 DFNCDLYGQTLKICIVGYLRPERSFDSLESLIAAIRGDIEQAKAFLD 132
Cdd:smart00904  78 DFSGDLYGEEIEVEFLKFIRDEQKFDSLDELKAQISRDIEEAREYLA 124
RibF COG0196
FAD synthase [Coenzyme transport and metabolism]; FAD synthase is part of the Pathway ...
 11-133 6.80e-38

FAD synthase [Coenzyme transport and metabolism]; FAD synthase is part of the Pathway/BioSystem: Riboflavin/FAD biosynthesis


Pssm-ID: 439966 [Multi-domain]  Cd Length: 310  Bit Score: 130.93  E-value: 6.80e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665393481  11 GEIVRGFGRGsKELGIPTANFPLEVVKSLPeslPTGAYYGWANVDNGPvHKMVLSIGWNPFYNNKEKSVETHMLhDFNCD 90
Cdd:COG0196  192 GRVVHGDKRG-RTLGFPTANLALPEEKLLP---ADGVYAVRVRIDGRR-YPGVANIGTRPTFDGGEPTLEVHLL-DFDGD 265

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 665393481  91 LYGQTLKICIVGYLRPERSFDSLESLIAAIRGDIEQAKAFLDE 133
Cdd:COG0196  266 LYGKEIEVEFLKRLRDEKKFDSLEALKAQIAKDVEQARAILAK 308
PRK05627 PRK05627
bifunctional riboflavin kinase/FAD synthetase;
11-131 1.47e-32

bifunctional riboflavin kinase/FAD synthetase;


Pssm-ID: 235536 [Multi-domain]  Cd Length: 305  Bit Score: 116.79  E-value: 1.47e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665393481  11 GEIVRGFGRGsKELGIPTANFPLEvvkslPESLP-TGAYYGWANVDNGPvHKMVLSIGWNPFYNNKEKSVETHMLhDFNC 89
Cdd:PRK05627 190 GRVVHGQKLG-RTLGFPTANLPLP-----DRVLPaDGVYAVRVKVDGKP-YPGVANIGTRPTVDGGRQLLEVHLL-DFNG 261

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 665393481  90 DLYGQTLKICIVGYLRPERSFDSLESLIAAIRGDIEQAKAFL 131
Cdd:PRK05627 262 DLYGEHITVEFLKKLRDEQKFDSLDELKAQIAKDIETARAFL 303
ribF TIGR00083
riboflavin kinase/FMN adenylyltransferase; multifunctional enzyme: riboflavin kinase (EC 2.7.1. ...
 6-131 1.66e-23

riboflavin kinase/FMN adenylyltransferase; multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase). [Biosynthesis of cofactors, prosthetic groups, and carriers, Riboflavin, FMN, and FAD]


Pssm-ID: 272898 [Multi-domain]  Cd Length: 288  Bit Score: 92.89  E-value: 1.66e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665393481    6 PLFAGGEIVRGFGRGSKeLGIPTANFPLEVVKSLPeslPTGAYYGWANVdNGPVHKMVLSIGWNPFYNNKEKSVETHMLh 85
Cdd:TIGR00083 168 PYFICGTVIHGQKLGRT-LGFPTANIKLKNQVLPL---KGGYYVVVVLL-NGEPYPGVGNIGNRPTFIGQQLVIEVHLL- 241

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 665393481   86 DFNCDLYGQTLKICIVGYLRPERSFDSLESLIAAIRGDIEQAKAFL 131
Cdd:TIGR00083 242 DFSGELYGQEIKVTLVKKIRPEQKFSSLDELKNQIQQDILQAKKWF 287
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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