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Conserved domains on  [gi|808354983|ref|NP_001293390|]
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VWFD domain-containing protein [Caenorhabditis elegans]

Protein Classification

glycine-rich domain-containing protein( domain architecture ID 18074126)

glycine-rich domain-containing protein similar to Arabidopsis thaliana glycine-rich domain-containing protein 1 and 2 (GRDP1/2), which are involved in development and stress responses

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
GRDP-like pfam07173
Glycine-rich domain-containing protein-like; This entry includes Arabidopsis Glycine-rich ...
 58-189 7.51e-53

Glycine-rich domain-containing protein-like; This entry includes Arabidopsis Glycine-rich domain- containing protein 1 and 2 (GRDP1/2). They are involved in development and stress responses.


:

Pssm-ID: 429333  Cd Length: 139  Bit Score: 179.05  E-value: 7.51e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808354983   58 YQEDCEKLVGKIIDHKLLSSDEIQKRYDSSVRAWDSYCSAEPYDFL-----ASQTPPTAYKTKCNYDIAGAVQRQRNFNY 132
Cdd:pfam07173   1 YRSDCESLFGKIIDHPAIDSSNEEYAYSRTRELWLRLYPDEPFDLEsnglsDIINEVSGDSSSISYDLVSAVKRQRDFYY 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 808354983  133 QVSLPHYTSAKFLSDAVKRYIQFLLLKQTYADQF--LTPCYDFDIIWHTHQVHPSSYLR 189
Cdd:pfam07173  81 QVSLPHYSDEVFLEAAVQRYKGFLYLLKRNPEEFsfLVPTYDIDLIWHTHQLHPISYAK 139
GRDP-like super family cl42056
Glycine-rich domain-containing protein-like; This entry includes Arabidopsis Glycine-rich ...
 17-94 4.67e-07

Glycine-rich domain-containing protein-like; This entry includes Arabidopsis Glycine-rich domain- containing protein 1 and 2 (GRDP1/2). They are involved in development and stress responses.


The actual alignment was detected with superfamily member COG4278:

Pssm-ID: 477928  Cd Length: 140  Bit Score: 49.63  E-value: 4.67e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808354983  17 HALRRYetFWLpmQAAHPDLNVIPPLDVHWVWHTHMLSPIHYQEDCEKLVGKIIDHK--LLSSDEIQKRYDSSVRAWDSY 94
Cdd:COG4278   38 EEYRRF--LYL--CAKAPGHPLMPSQVVDEVWHEHILYTRSYAEFCQRVLGRFLHHTptEGGGSERAKFQDALERTLRLY 113
 
Name Accession Description Interval E-value
GRDP-like pfam07173
Glycine-rich domain-containing protein-like; This entry includes Arabidopsis Glycine-rich ...
 58-189 7.51e-53

Glycine-rich domain-containing protein-like; This entry includes Arabidopsis Glycine-rich domain- containing protein 1 and 2 (GRDP1/2). They are involved in development and stress responses.


Pssm-ID: 429333  Cd Length: 139  Bit Score: 179.05  E-value: 7.51e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808354983   58 YQEDCEKLVGKIIDHKLLSSDEIQKRYDSSVRAWDSYCSAEPYDFL-----ASQTPPTAYKTKCNYDIAGAVQRQRNFNY 132
Cdd:pfam07173   1 YRSDCESLFGKIIDHPAIDSSNEEYAYSRTRELWLRLYPDEPFDLEsnglsDIINEVSGDSSSISYDLVSAVKRQRDFYY 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 808354983  133 QVSLPHYTSAKFLSDAVKRYIQFLLLKQTYADQF--LTPCYDFDIIWHTHQVHPSSYLR 189
Cdd:pfam07173  81 QVSLPHYSDEVFLEAAVQRYKGFLYLLKRNPEEFsfLVPTYDIDLIWHTHQLHPISYAK 139
COG4278 COG4278
Uncharacterized conserved protein [Function unknown];
17-94 4.67e-07

Uncharacterized conserved protein [Function unknown];


Pssm-ID: 443419  Cd Length: 140  Bit Score: 49.63  E-value: 4.67e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808354983  17 HALRRYetFWLpmQAAHPDLNVIPPLDVHWVWHTHMLSPIHYQEDCEKLVGKIIDHK--LLSSDEIQKRYDSSVRAWDSY 94
Cdd:COG4278   38 EEYRRF--LYL--CAKAPGHPLMPSQVVDEVWHEHILYTRSYAEFCQRVLGRFLHHTptEGGGSERAKFQDALERTLRLY 113
GRDP-like pfam07173
Glycine-rich domain-containing protein-like; This entry includes Arabidopsis Glycine-rich ...
 18-58 4.02e-04

Glycine-rich domain-containing protein-like; This entry includes Arabidopsis Glycine-rich domain- containing protein 1 and 2 (GRDP1/2). They are involved in development and stress responses.


Pssm-ID: 429333  Cd Length: 139  Bit Score: 41.15  E-value: 4.02e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 808354983   18 ALRRYETFwLPMQAAHPDLNV--IPPLDVHWVWHTHMLSPIHY 58
Cdd:pfam07173  96 AVQRYKGF-LYLLKRNPEEFSflVPTYDIDLIWHTHQLHPISY 137
 
Name Accession Description Interval E-value
GRDP-like pfam07173
Glycine-rich domain-containing protein-like; This entry includes Arabidopsis Glycine-rich ...
 58-189 7.51e-53

Glycine-rich domain-containing protein-like; This entry includes Arabidopsis Glycine-rich domain- containing protein 1 and 2 (GRDP1/2). They are involved in development and stress responses.


Pssm-ID: 429333  Cd Length: 139  Bit Score: 179.05  E-value: 7.51e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808354983   58 YQEDCEKLVGKIIDHKLLSSDEIQKRYDSSVRAWDSYCSAEPYDFL-----ASQTPPTAYKTKCNYDIAGAVQRQRNFNY 132
Cdd:pfam07173   1 YRSDCESLFGKIIDHPAIDSSNEEYAYSRTRELWLRLYPDEPFDLEsnglsDIINEVSGDSSSISYDLVSAVKRQRDFYY 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 808354983  133 QVSLPHYTSAKFLSDAVKRYIQFLLLKQTYADQF--LTPCYDFDIIWHTHQVHPSSYLR 189
Cdd:pfam07173  81 QVSLPHYSDEVFLEAAVQRYKGFLYLLKRNPEEFsfLVPTYDIDLIWHTHQLHPISYAK 139
COG4278 COG4278
Uncharacterized conserved protein [Function unknown];
17-94 4.67e-07

Uncharacterized conserved protein [Function unknown];


Pssm-ID: 443419  Cd Length: 140  Bit Score: 49.63  E-value: 4.67e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808354983  17 HALRRYetFWLpmQAAHPDLNVIPPLDVHWVWHTHMLSPIHYQEDCEKLVGKIIDHK--LLSSDEIQKRYDSSVRAWDSY 94
Cdd:COG4278   38 EEYRRF--LYL--CAKAPGHPLMPSQVVDEVWHEHILYTRSYAEFCQRVLGRFLHHTptEGGGSERAKFQDALERTLRLY 113
GRDP-like pfam07173
Glycine-rich domain-containing protein-like; This entry includes Arabidopsis Glycine-rich ...
 18-58 4.02e-04

Glycine-rich domain-containing protein-like; This entry includes Arabidopsis Glycine-rich domain- containing protein 1 and 2 (GRDP1/2). They are involved in development and stress responses.


Pssm-ID: 429333  Cd Length: 139  Bit Score: 41.15  E-value: 4.02e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 808354983   18 ALRRYETFwLPMQAAHPDLNV--IPPLDVHWVWHTHMLSPIHY 58
Cdd:pfam07173  96 AVQRYKGF-LYLLKRNPEEFSflVPTYDIDLIWHTHQLHPISY 137
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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