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Conserved domains on  [gi|1063702207|ref|NP_001318345|]
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Dormancy/auxin associated family protein [Arabidopsis thaliana]

Protein Classification

Auxin_repressed domain-containing protein( domain architecture ID 10527755)

Auxin_repressed domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Auxin_repressed pfam05564
Dormancy/auxin associated protein; This family contains several plant dormancy-associated and ...
 1-106 1.38e-57

Dormancy/auxin associated protein; This family contains several plant dormancy-associated and auxin-repressed proteins the function of which are poorly understood.


:

Pssm-ID: 398933  Cd Length: 117  Bit Score: 173.15  E-value: 1.38e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063702207   1 MWDETVAGPKPEHGLGRLRnKITTQPLDIK--GEGSS-------SKTVAAVAGSPGTPTTP---GSARKENVWRSVFHPG 68
Cdd:pfam05564   1 LWDDVVAGPQPDRGLGKLR-KITTKPLDIKtlGEGESsgskyqrSLSMPASPGTPGTPTTPttpTTARKDNVWRSVFHPG 79

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1063702207  69 SNIATRGMGTNLFDKPSHPNSPTVYDWLYSDDTRSKHR 106
Cdd:pfam05564  80 SNLATKRIGANLFDKPTHPNSPTVYDWLYSGETRSKHR 117
 
Name Accession Description Interval E-value
Auxin_repressed pfam05564
Dormancy/auxin associated protein; This family contains several plant dormancy-associated and ...
 1-106 1.38e-57

Dormancy/auxin associated protein; This family contains several plant dormancy-associated and auxin-repressed proteins the function of which are poorly understood.


Pssm-ID: 398933  Cd Length: 117  Bit Score: 173.15  E-value: 1.38e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063702207   1 MWDETVAGPKPEHGLGRLRnKITTQPLDIK--GEGSS-------SKTVAAVAGSPGTPTTP---GSARKENVWRSVFHPG 68
Cdd:pfam05564   1 LWDDVVAGPQPDRGLGKLR-KITTKPLDIKtlGEGESsgskyqrSLSMPASPGTPGTPTTPttpTTARKDNVWRSVFHPG 79

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1063702207  69 SNIATRGMGTNLFDKPSHPNSPTVYDWLYSDDTRSKHR 106
Cdd:pfam05564  80 SNLATKRIGANLFDKPTHPNSPTVYDWLYSGETRSKHR 117
 
Name Accession Description Interval E-value
Auxin_repressed pfam05564
Dormancy/auxin associated protein; This family contains several plant dormancy-associated and ...
 1-106 1.38e-57

Dormancy/auxin associated protein; This family contains several plant dormancy-associated and auxin-repressed proteins the function of which are poorly understood.


Pssm-ID: 398933  Cd Length: 117  Bit Score: 173.15  E-value: 1.38e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063702207   1 MWDETVAGPKPEHGLGRLRnKITTQPLDIK--GEGSS-------SKTVAAVAGSPGTPTTP---GSARKENVWRSVFHPG 68
Cdd:pfam05564   1 LWDDVVAGPQPDRGLGKLR-KITTKPLDIKtlGEGESsgskyqrSLSMPASPGTPGTPTTPttpTTARKDNVWRSVFHPG 79

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1063702207  69 SNIATRGMGTNLFDKPSHPNSPTVYDWLYSDDTRSKHR 106
Cdd:pfam05564  80 SNLATKRIGANLFDKPTHPNSPTVYDWLYSGETRSKHR 117
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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