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Conserved domains on  [gi|1063695577|ref|NP_001320820|]
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FAR1-related sequence 4 [Arabidopsis thaliana]

Protein Classification

FHY3/FAR1 family protein( domain architecture ID 1001808)

FHY3/FAR1 family protein similar to FAR-RED ELONGATED HYPOCOTYL 3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) which are transcription factors that play multiple roles in a wide range of cellular processes and are crucial for plant growth and development, and to transposases of the Mutator-like element (MULE)

Gene Ontology:  GO:0003677
PubMed:  15591448

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
FHY3 super family cl31971
Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
 1-632 0e+00

Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional


The actual alignment was detected with superfamily member PLN03097:

Pssm-ID: 178645 [Multi-domain]  Cd Length: 846  Bit Score: 758.76  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063695577   1 MEFETHEDAYLFYKDYAKSVGFGTAKLSSRRSRASKEFIDAKFSCIRYGSKQQSDDAIN-PRAS---------------P 64
Cdd:PLN03097   78 MEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNrPRARqtkqdpengtgrrscA 157

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063695577  65 KIGCKASMHVKRRPDGKWYVYSFVKEHNHDLLPEQAHyfrshrntelvksndSRLRRKKNTPLTdcKHLSAYHDLDFIDG 144
Cdd:PLN03097  158 KTDCKASMHVKRRPDGKWVIHSFVKEHNHELLPAQAV---------------SEQTRKMYAAMA--RQFAEYKNVVGLKN 220

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063695577 145 YMRNQHDKGRRLVLDTGDAEILLEFLMRMQEENPKFFFAVDFSEDHLLRNVFWVDAKGIEDYKSFSDVVSFETSYFVSKY 224
Cdd:PLN03097  221 DSKSSFDKGRNLGLEAGDTKILLDFFTQMQNMNSNFFYAVDLGEDQRLKNLFWVDAKSRHDYGNFSDVVSFDTTYVRNKY 300

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063695577 225 KVPLVLFVGVNHHVQPVLLGCGLLADDTVYTYVWLMQSWLVAMGGQKPKVMLTDQNNAIKAAIAAVLPETRHCYCLWHVL 304
Cdd:PLN03097  301 KMPLALFVGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAMGGQAPKVIITDQDKAMKSVISEVFPNAHHCFFLWHIL 380

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063695577 305 DQLPRNLDYWSMWQDTFMKKLFKCIYRSWSEEEFDRRWLKLIDKFHLRDVPWMRSLYEERKFWAPTFMRGITFAGLSMRC 384
Cdd:PLN03097  381 GKVSENLGQVIKQHENFMAKFEKCIYRSWTEEEFGKRWWKILDRFELKEDEWMQSLYEDRKQWVPTYMRDAFLAGMSTVQ 460

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063695577 385 RSESVNSLFDRYVHPETSLKEFLEGYGLMLEDRYEEEAKADFDAWHEAPELKSPSPFEKQMLLVYSHEIFRRFQLEVLGA 464
Cdd:PLN03097  461 RSESINAFFDKYVHKKTTVQEFVKQYETILQDRYEEEAKADSDTWNKQPALKSPSPLEKSVSGVYTHAVFKKFQVEVLGA 540

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063695577 465 AACHLTKESEEGT--TYSVKDFDDEQKYLVDWDEFKSDIYCSCRSFEYKGYLCRHAIVVLQMSGVFTIPINYVLQRWTNA 542
Cdd:PLN03097  541 VACHPKMESQDETsiTFRVQDFEKNQDFTVTWNQTKLEVSCICRLFEYKGYLCRHALVVLQMCQLSAIPSQYILKRWTKD 620

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063695577 543 ARNRHQISRNLELVQSNIRRFNDLCRRAIILGEEGSLSQESYDIAMFAMKEAFKQCAVTINTIKHPARCEEAAIQAGDPV 622
Cdd:PLN03097  621 AKSRHLLGEESEQVQSRVQRYNDLCQRALKLSEEASLSQESYNIAFRALEEAFGNCISMNNSNKSLVEAGTSPTHGLLCI 700

                         650
                  ....*....|
gi 1063695577 623 QEENQYGSTS 632
Cdd:PLN03097  701 EDDNQSRSMT 710
 
Name Accession Description Interval E-value
FHY3 PLN03097
Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
 1-632 0e+00

Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional


Pssm-ID: 178645 [Multi-domain]  Cd Length: 846  Bit Score: 758.76  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063695577   1 MEFETHEDAYLFYKDYAKSVGFGTAKLSSRRSRASKEFIDAKFSCIRYGSKQQSDDAIN-PRAS---------------P 64
Cdd:PLN03097   78 MEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNrPRARqtkqdpengtgrrscA 157

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063695577  65 KIGCKASMHVKRRPDGKWYVYSFVKEHNHDLLPEQAHyfrshrntelvksndSRLRRKKNTPLTdcKHLSAYHDLDFIDG 144
Cdd:PLN03097  158 KTDCKASMHVKRRPDGKWVIHSFVKEHNHELLPAQAV---------------SEQTRKMYAAMA--RQFAEYKNVVGLKN 220

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063695577 145 YMRNQHDKGRRLVLDTGDAEILLEFLMRMQEENPKFFFAVDFSEDHLLRNVFWVDAKGIEDYKSFSDVVSFETSYFVSKY 224
Cdd:PLN03097  221 DSKSSFDKGRNLGLEAGDTKILLDFFTQMQNMNSNFFYAVDLGEDQRLKNLFWVDAKSRHDYGNFSDVVSFDTTYVRNKY 300

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063695577 225 KVPLVLFVGVNHHVQPVLLGCGLLADDTVYTYVWLMQSWLVAMGGQKPKVMLTDQNNAIKAAIAAVLPETRHCYCLWHVL 304
Cdd:PLN03097  301 KMPLALFVGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAMGGQAPKVIITDQDKAMKSVISEVFPNAHHCFFLWHIL 380

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063695577 305 DQLPRNLDYWSMWQDTFMKKLFKCIYRSWSEEEFDRRWLKLIDKFHLRDVPWMRSLYEERKFWAPTFMRGITFAGLSMRC 384
Cdd:PLN03097  381 GKVSENLGQVIKQHENFMAKFEKCIYRSWTEEEFGKRWWKILDRFELKEDEWMQSLYEDRKQWVPTYMRDAFLAGMSTVQ 460

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063695577 385 RSESVNSLFDRYVHPETSLKEFLEGYGLMLEDRYEEEAKADFDAWHEAPELKSPSPFEKQMLLVYSHEIFRRFQLEVLGA 464
Cdd:PLN03097  461 RSESINAFFDKYVHKKTTVQEFVKQYETILQDRYEEEAKADSDTWNKQPALKSPSPLEKSVSGVYTHAVFKKFQVEVLGA 540

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063695577 465 AACHLTKESEEGT--TYSVKDFDDEQKYLVDWDEFKSDIYCSCRSFEYKGYLCRHAIVVLQMSGVFTIPINYVLQRWTNA 542
Cdd:PLN03097  541 VACHPKMESQDETsiTFRVQDFEKNQDFTVTWNQTKLEVSCICRLFEYKGYLCRHALVVLQMCQLSAIPSQYILKRWTKD 620

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063695577 543 ARNRHQISRNLELVQSNIRRFNDLCRRAIILGEEGSLSQESYDIAMFAMKEAFKQCAVTINTIKHPARCEEAAIQAGDPV 622
Cdd:PLN03097  621 AKSRHLLGEESEQVQSRVQRYNDLCQRALKLSEEASLSQESYNIAFRALEEAFGNCISMNNSNKSLVEAGTSPTHGLLCI 700

                         650
                  ....*....|
gi 1063695577 623 QEENQYGSTS 632
Cdd:PLN03097  701 EDDNQSRSMT 710
FAR1 pfam03101
FAR1 DNA-binding domain; This domain contains a WRKY like fold and is therefore most likely a ...
 12-97 8.66e-37

FAR1 DNA-binding domain; This domain contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.


Pssm-ID: 335217 [Multi-domain]  Cd Length: 90  Bit Score: 132.46  E-value: 8.66e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063695577  12 FYKDYAKSVGFGTAKLSSRRSRASKEFIDAKFSCIRYGSKQQSDD---AINPRASPKIGCKASMHVKRRPDGKWYVYSFV 88
Cdd:pfam03101   2 FYNEYARRVGFSVRVKKSRRSRNDGEIIRRKFVCSKEGFKQPKQRtgeARRPRPSTRTGCKAMIVVKRESDGKWVVTQFV 81


                  ....*....
gi 1063695577  89 KEHNHDLLP 97
Cdd:pfam03101  82 KEHNHELLP 90
ZnF_PMZ smart00575
plant mutator transposase zinc finger;
503-528 5.91e-07

plant mutator transposase zinc finger;


Pssm-ID: 128845  Cd Length: 28  Bit Score: 46.01  E-value: 5.91e-07
                           10        20
                   ....*....|....*....|....*.
gi 1063695577  503 CSCRSFEYKGYLCRHAIVVLQMSGVF 528
Cdd:smart00575   3 CSCRKFQLSGIPCRHALAAAIHIGLS 28
 
Name Accession Description Interval E-value
FHY3 PLN03097
Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
 1-632 0e+00

Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional


Pssm-ID: 178645 [Multi-domain]  Cd Length: 846  Bit Score: 758.76  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063695577   1 MEFETHEDAYLFYKDYAKSVGFGTAKLSSRRSRASKEFIDAKFSCIRYGSKQQSDDAIN-PRAS---------------P 64
Cdd:PLN03097   78 MEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNrPRARqtkqdpengtgrrscA 157

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063695577  65 KIGCKASMHVKRRPDGKWYVYSFVKEHNHDLLPEQAHyfrshrntelvksndSRLRRKKNTPLTdcKHLSAYHDLDFIDG 144
Cdd:PLN03097  158 KTDCKASMHVKRRPDGKWVIHSFVKEHNHELLPAQAV---------------SEQTRKMYAAMA--RQFAEYKNVVGLKN 220

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063695577 145 YMRNQHDKGRRLVLDTGDAEILLEFLMRMQEENPKFFFAVDFSEDHLLRNVFWVDAKGIEDYKSFSDVVSFETSYFVSKY 224
Cdd:PLN03097  221 DSKSSFDKGRNLGLEAGDTKILLDFFTQMQNMNSNFFYAVDLGEDQRLKNLFWVDAKSRHDYGNFSDVVSFDTTYVRNKY 300

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063695577 225 KVPLVLFVGVNHHVQPVLLGCGLLADDTVYTYVWLMQSWLVAMGGQKPKVMLTDQNNAIKAAIAAVLPETRHCYCLWHVL 304
Cdd:PLN03097  301 KMPLALFVGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAMGGQAPKVIITDQDKAMKSVISEVFPNAHHCFFLWHIL 380

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063695577 305 DQLPRNLDYWSMWQDTFMKKLFKCIYRSWSEEEFDRRWLKLIDKFHLRDVPWMRSLYEERKFWAPTFMRGITFAGLSMRC 384
Cdd:PLN03097  381 GKVSENLGQVIKQHENFMAKFEKCIYRSWTEEEFGKRWWKILDRFELKEDEWMQSLYEDRKQWVPTYMRDAFLAGMSTVQ 460

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063695577 385 RSESVNSLFDRYVHPETSLKEFLEGYGLMLEDRYEEEAKADFDAWHEAPELKSPSPFEKQMLLVYSHEIFRRFQLEVLGA 464
Cdd:PLN03097  461 RSESINAFFDKYVHKKTTVQEFVKQYETILQDRYEEEAKADSDTWNKQPALKSPSPLEKSVSGVYTHAVFKKFQVEVLGA 540

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063695577 465 AACHLTKESEEGT--TYSVKDFDDEQKYLVDWDEFKSDIYCSCRSFEYKGYLCRHAIVVLQMSGVFTIPINYVLQRWTNA 542
Cdd:PLN03097  541 VACHPKMESQDETsiTFRVQDFEKNQDFTVTWNQTKLEVSCICRLFEYKGYLCRHALVVLQMCQLSAIPSQYILKRWTKD 620

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063695577 543 ARNRHQISRNLELVQSNIRRFNDLCRRAIILGEEGSLSQESYDIAMFAMKEAFKQCAVTINTIKHPARCEEAAIQAGDPV 622
Cdd:PLN03097  621 AKSRHLLGEESEQVQSRVQRYNDLCQRALKLSEEASLSQESYNIAFRALEEAFGNCISMNNSNKSLVEAGTSPTHGLLCI 700

                         650
                  ....*....|
gi 1063695577 623 QEENQYGSTS 632
Cdd:PLN03097  701 EDDNQSRSMT 710
FAR1 pfam03101
FAR1 DNA-binding domain; This domain contains a WRKY like fold and is therefore most likely a ...
 12-97 8.66e-37

FAR1 DNA-binding domain; This domain contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.


Pssm-ID: 335217 [Multi-domain]  Cd Length: 90  Bit Score: 132.46  E-value: 8.66e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063695577  12 FYKDYAKSVGFGTAKLSSRRSRASKEFIDAKFSCIRYGSKQQSDD---AINPRASPKIGCKASMHVKRRPDGKWYVYSFV 88
Cdd:pfam03101   2 FYNEYARRVGFSVRVKKSRRSRNDGEIIRRKFVCSKEGFKQPKQRtgeARRPRPSTRTGCKAMIVVKRESDGKWVVTQFV 81


                  ....*....
gi 1063695577  89 KEHNHDLLP 97
Cdd:pfam03101  82 KEHNHELLP 90
MULE pfam10551
MULE transposase domain; This domain was identified by Babu and colleagues.
 212-303 3.60e-20

MULE transposase domain; This domain was identified by Babu and colleagues.


Pssm-ID: 463145 [Multi-domain]  Cd Length: 98  Bit Score: 85.78  E-value: 3.60e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063695577 212 VVSFETSYFVSKYKVPLVLFVGVNHHVQPVLLGCGLLADDTVYTYVWLMQ---SWLVAMGGQKPKVMLTDQNNAIKAAIA 288
Cdd:pfam10551   1 VLLIDGTYKTNKYKMPLFTAVGVDHHGQSFPIAFGLVSNETEESFTWLFDqliAFRECMSGLSPQVIITDRDKALKNAIN 80

                          90
                  ....*....|....*
gi 1063695577 289 AVLPETRHCYCLWHV 303
Cdd:pfam10551  81 LVFPEAQHRLCIFHI 95
SWIM pfam04434
SWIM zinc finger; This domain is found in bacterial, archaeal and eukaryotic proteins. It is ...
 490-526 6.42e-08

SWIM zinc finger; This domain is found in bacterial, archaeal and eukaryotic proteins. It is predicted to be organized into two N-terminal beta-strands and a C-terminal alpha helix, thus possibly adopting a fold similar to that of the C2H2 zinc finger (pfam00096). SWIM is thought to be a versatile domain that can interact with DNA or proteins in different contexts.


Pssm-ID: 309540  Cd Length: 38  Bit Score: 48.95  E-value: 6.42e-08
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1063695577 490 YLVDWDEFK-SDIYCSCRSFEYKGYLCRHAIVVLQMSG 526
Cdd:pfam04434   1 YRVQLDLDGlEKASCSCPDFQLNGIPCKHALAVLLALG 38
ZnF_PMZ smart00575
plant mutator transposase zinc finger;
503-528 5.91e-07

plant mutator transposase zinc finger;


Pssm-ID: 128845  Cd Length: 28  Bit Score: 46.01  E-value: 5.91e-07
                           10        20
                   ....*....|....*....|....*.
gi 1063695577  503 CSCRSFEYKGYLCRHAIVVLQMSGVF 528
Cdd:smart00575   3 CSCRKFQLSGIPCRHALAAAIHIGLS 28
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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