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Conserved domains on  [gi|1063696771|ref|NP_001322437|]
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Mitochondrial transcription termination factor family protein [Arabidopsis thaliana]

Protein Classification

mTERF domain-containing protein( domain architecture ID 10495059)

mTERF (mitochondrial transcription termination factor) domain-containing protein may function as a transcription termination factor that binds promoter DNA and regulates mitochondrial replication and transcription

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
mTERF pfam02536
mTERF; This family contains one sequence of known function Human mitochondrial transcription ...
 88-390 4.99e-91

mTERF; This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerization role as in other leucine zippers.


:

Pssm-ID: 460581 [Multi-domain]  Cd Length: 313  Bit Score: 277.17  E-value: 4.99e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696771  88 LSLFRSYGFTDSQISTIITDYPLLLVADAKKALGRKLQILQSRGASSSEITEIVSTVPRILGKK---SITVYYDAVKDII 164
Cdd:pfam02536   1 LSLLESLGVTDSQISKILTRYPPVLHADVEKDLAPKLQFLLSLGASSSDLGKILSKYPRILGFKleeTMSTSVDFLKEIG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696771 165 VADTS-----SSYELPQG-SQGNKIRN-VSALRELGMPSRLLLPLLVSKSQpvcgkenfdaslkkvvemgfdptttkfVL 237
Cdd:pfam02536  81 VDKSSiggalRSWPSILGmRVGNNIKNnVEYLRELGVPQKLLARLLISRPQ---------------------------LL 133

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696771 238 ALRMLYQMSEKTIEEKVVVFRSLGFTVDDVWEIFKKTPSVLK------------------------------------VS 281
Cdd:pfam02536 134 ALDLVYLMKPKTFEEKVEFLKELGFSVEDVWKIIKKCPEILGlsiekklkkkieflkkcglseeelprvikkypqilsLS 213

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696771 282 KKKILKSAETFLDLGYSRAEFLMMVKRYPPCIEYSVESVKKKNEFLVKKMKWPRNALVLHPQVFGYSMEKRIIPRcniLE 361
Cdd:pfam02536 214 ERTILNRVEFLLGLGFSKEEVAKMVKRFPQLLGLSIEVLKPKLEFLVKEMKWPLKEVVEYPRVFGYSLEKRIKPR---IK 290

                         330       340
                  ....*....|....*....|....*....
gi 1063696771 362 ALLSKGLlrkgseLPAVSSVLSCTDEGFL 390
Cdd:pfam02536 291 ALVSKGL------ECSLSWMLACSDERFL 313
 
Name Accession Description Interval E-value
mTERF pfam02536
mTERF; This family contains one sequence of known function Human mitochondrial transcription ...
 88-390 4.99e-91

mTERF; This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerization role as in other leucine zippers.


Pssm-ID: 460581 [Multi-domain]  Cd Length: 313  Bit Score: 277.17  E-value: 4.99e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696771  88 LSLFRSYGFTDSQISTIITDYPLLLVADAKKALGRKLQILQSRGASSSEITEIVSTVPRILGKK---SITVYYDAVKDII 164
Cdd:pfam02536   1 LSLLESLGVTDSQISKILTRYPPVLHADVEKDLAPKLQFLLSLGASSSDLGKILSKYPRILGFKleeTMSTSVDFLKEIG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696771 165 VADTS-----SSYELPQG-SQGNKIRN-VSALRELGMPSRLLLPLLVSKSQpvcgkenfdaslkkvvemgfdptttkfVL 237
Cdd:pfam02536  81 VDKSSiggalRSWPSILGmRVGNNIKNnVEYLRELGVPQKLLARLLISRPQ---------------------------LL 133

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696771 238 ALRMLYQMSEKTIEEKVVVFRSLGFTVDDVWEIFKKTPSVLK------------------------------------VS 281
Cdd:pfam02536 134 ALDLVYLMKPKTFEEKVEFLKELGFSVEDVWKIIKKCPEILGlsiekklkkkieflkkcglseeelprvikkypqilsLS 213

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696771 282 KKKILKSAETFLDLGYSRAEFLMMVKRYPPCIEYSVESVKKKNEFLVKKMKWPRNALVLHPQVFGYSMEKRIIPRcniLE 361
Cdd:pfam02536 214 ERTILNRVEFLLGLGFSKEEVAKMVKRFPQLLGLSIEVLKPKLEFLVKEMKWPLKEVVEYPRVFGYSLEKRIKPR---IK 290

                         330       340
                  ....*....|....*....|....*....
gi 1063696771 362 ALLSKGLlrkgseLPAVSSVLSCTDEGFL 390
Cdd:pfam02536 291 ALVSKGL------ECSLSWMLACSDERFL 313
PLN03196 PLN03196
MOC1-like protein; Provisional
 87-392 1.63e-11

MOC1-like protein; Provisional


Pssm-ID: 215628 [Multi-domain]  Cd Length: 487  Bit Score: 65.89  E-value: 1.63e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696771  87 VLSLFRSYGFTDSQISTIITDYPLLLVADAKKALGRKLQILQSRGASSSEITEIVSTVPRILGKK-----SITVYY---- 157
Cdd:PLN03196  127 VLDYLEKLGVTRSSLPELLRRYPQVLHASVVVDLAPVVKYLQGLDVKRQDIPRVLERYPELLGFKlegtmSTSVAYlvsi 206

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696771 158 -DAVKDIIVADTSSSYELpqGSQ-GNKI-RNVSALRELGMPSRLLLPLLVSKSQpVCGKEnFDASLKKVVEMGFDPTTTK 234
Cdd:PLN03196  207 gVAPRDIGPMLTRFPEIL--GMRvGNNIkPKVDYLESLGLPRLAVARILEKRPY-ILGFD-LEETVKPNVECLLEFGVRK 282

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696771 235 FVLAlRMLYQMSE--------KTIEEKVVVFRSLGFTVDDVWEIFKKTPSVLKVSKKKILKSAETFLDLGYSRAEFLMMV 306
Cdd:PLN03196  283 EALP-SVIAQYPDilgldlkaKLAEQQYWLTSKLKIDPEDFGRVIEKLPQIVSLNRNVALKHVEFLRGRGFSAQDVAKMV 361

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696771 307 KRYPPCIEYSVESVKKKNEFLVKKMKWPRNALVLHPQVFGYSMEKRIIPRcniLEALLSKGLlrKGSelpaVSSVLSCTD 386
Cdd:PLN03196  362 VRCPQILALNLEIMKPSLEFFKKEMKRPLKELVEFPAYFTYGLESRIKPR---YERVAKKGI--KCS----LAWFLNCSD 432


                  ....*.
gi 1063696771 387 EGFLDR 392
Cdd:PLN03196  433 DKFEQR 438
 
Name Accession Description Interval E-value
mTERF pfam02536
mTERF; This family contains one sequence of known function Human mitochondrial transcription ...
 88-390 4.99e-91

mTERF; This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerization role as in other leucine zippers.


Pssm-ID: 460581 [Multi-domain]  Cd Length: 313  Bit Score: 277.17  E-value: 4.99e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696771  88 LSLFRSYGFTDSQISTIITDYPLLLVADAKKALGRKLQILQSRGASSSEITEIVSTVPRILGKK---SITVYYDAVKDII 164
Cdd:pfam02536   1 LSLLESLGVTDSQISKILTRYPPVLHADVEKDLAPKLQFLLSLGASSSDLGKILSKYPRILGFKleeTMSTSVDFLKEIG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696771 165 VADTS-----SSYELPQG-SQGNKIRN-VSALRELGMPSRLLLPLLVSKSQpvcgkenfdaslkkvvemgfdptttkfVL 237
Cdd:pfam02536  81 VDKSSiggalRSWPSILGmRVGNNIKNnVEYLRELGVPQKLLARLLISRPQ---------------------------LL 133

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696771 238 ALRMLYQMSEKTIEEKVVVFRSLGFTVDDVWEIFKKTPSVLK------------------------------------VS 281
Cdd:pfam02536 134 ALDLVYLMKPKTFEEKVEFLKELGFSVEDVWKIIKKCPEILGlsiekklkkkieflkkcglseeelprvikkypqilsLS 213

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696771 282 KKKILKSAETFLDLGYSRAEFLMMVKRYPPCIEYSVESVKKKNEFLVKKMKWPRNALVLHPQVFGYSMEKRIIPRcniLE 361
Cdd:pfam02536 214 ERTILNRVEFLLGLGFSKEEVAKMVKRFPQLLGLSIEVLKPKLEFLVKEMKWPLKEVVEYPRVFGYSLEKRIKPR---IK 290

                         330       340
                  ....*....|....*....|....*....
gi 1063696771 362 ALLSKGLlrkgseLPAVSSVLSCTDEGFL 390
Cdd:pfam02536 291 ALVSKGL------ECSLSWMLACSDERFL 313
PLN03196 PLN03196
MOC1-like protein; Provisional
 87-392 1.63e-11

MOC1-like protein; Provisional


Pssm-ID: 215628 [Multi-domain]  Cd Length: 487  Bit Score: 65.89  E-value: 1.63e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696771  87 VLSLFRSYGFTDSQISTIITDYPLLLVADAKKALGRKLQILQSRGASSSEITEIVSTVPRILGKK-----SITVYY---- 157
Cdd:PLN03196  127 VLDYLEKLGVTRSSLPELLRRYPQVLHASVVVDLAPVVKYLQGLDVKRQDIPRVLERYPELLGFKlegtmSTSVAYlvsi 206

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696771 158 -DAVKDIIVADTSSSYELpqGSQ-GNKI-RNVSALRELGMPSRLLLPLLVSKSQpVCGKEnFDASLKKVVEMGFDPTTTK 234
Cdd:PLN03196  207 gVAPRDIGPMLTRFPEIL--GMRvGNNIkPKVDYLESLGLPRLAVARILEKRPY-ILGFD-LEETVKPNVECLLEFGVRK 282

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696771 235 FVLAlRMLYQMSE--------KTIEEKVVVFRSLGFTVDDVWEIFKKTPSVLKVSKKKILKSAETFLDLGYSRAEFLMMV 306
Cdd:PLN03196  283 EALP-SVIAQYPDilgldlkaKLAEQQYWLTSKLKIDPEDFGRVIEKLPQIVSLNRNVALKHVEFLRGRGFSAQDVAKMV 361

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696771 307 KRYPPCIEYSVESVKKKNEFLVKKMKWPRNALVLHPQVFGYSMEKRIIPRcniLEALLSKGLlrKGSelpaVSSVLSCTD 386
Cdd:PLN03196  362 VRCPQILALNLEIMKPSLEFFKKEMKRPLKELVEFPAYFTYGLESRIKPR---YERVAKKGI--KCS----LAWFLNCSD 432


                  ....*.
gi 1063696771 387 EGFLDR 392
Cdd:PLN03196  433 DKFEQR 438
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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