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Conserved domains on  [gi|1063714186|ref|NP_001325794|]
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photosystem II light harvesting complex protein 2.3 [Arabidopsis thaliana]

Protein Classification

chlorophyll a-b binding protein( domain architecture ID 10010583)

chlorophyll a-b binding protein is a component of the light-harvesting complex (LHC) that functions as a light receptor; it captures and delivers excitation energy to photosystems with which it is closely associated

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
PLN00025 PLN00025
photosystem II light harvesting chlorophyll a/b binding protein; Provisional
 35-298 0e+00

photosystem II light harvesting chlorophyll a/b binding protein; Provisional


:

Pssm-ID: 215033 [Multi-domain]  Cd Length: 262  Bit Score: 557.82  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063714186  35 TSAIQHSSFAGQTTLKPSNDLLRKIGAsnggGRIIMRRTVKST--PQSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGW 112
Cdd:PLN00025    1 AMALSSTAFAGQAALKPPNELSRKVGN----GRVTMRKTVAKAagSGSIWYGPDRPKYLGPFSGETPSYLTGEFPGDYGW 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063714186 113 DTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILA 192
Cdd:PLN00025   77 DTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILA 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063714186 193 IWACQVVLMGFIEGYRIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 272
Cdd:PLN00025  157 IWACQVVLMGAVEGYRVNGGPLGEGLDPLYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 236

                         250       260
                  ....*....|....*....|....*.
gi 1063714186 273 ENLFDHIADPVANNAWAYATNFVPGK 298
Cdd:PLN00025  237 ENLADHLADPVANNAWAYATNFVPGK 262
 
Name Accession Description Interval E-value
PLN00025 PLN00025
photosystem II light harvesting chlorophyll a/b binding protein; Provisional
 35-298 0e+00

photosystem II light harvesting chlorophyll a/b binding protein; Provisional


Pssm-ID: 215033 [Multi-domain]  Cd Length: 262  Bit Score: 557.82  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063714186  35 TSAIQHSSFAGQTTLKPSNDLLRKIGAsnggGRIIMRRTVKST--PQSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGW 112
Cdd:PLN00025    1 AMALSSTAFAGQAALKPPNELSRKVGN----GRVTMRKTVAKAagSGSIWYGPDRPKYLGPFSGETPSYLTGEFPGDYGW 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063714186 113 DTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILA 192
Cdd:PLN00025   77 DTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILA 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063714186 193 IWACQVVLMGFIEGYRIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 272
Cdd:PLN00025  157 IWACQVVLMGAVEGYRVNGGPLGEGLDPLYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 236

                         250       260
                  ....*....|....*....|....*.
gi 1063714186 273 ENLFDHIADPVANNAWAYATNFVPGK 298
Cdd:PLN00025  237 ENLADHLADPVANNAWAYATNFVPGK 262
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
99-265 3.62e-64

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 199.07  E-value: 3.62e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063714186  99 PSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNGVKfGEAVWFKAGSQIFseggldy 178
Cdd:pfam00504   2 PAYLDGSLPGDYGFDPLGLSADPETFKRYREAELKHGRWAMLAVLGALVPEALGKLGGG-NEPVWFEAGAVAL------- 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063714186 179 lgnpnliHAQSILAI-WACQVVLMGFIEGYRIGGG---PLGEGLDPLYPGG-AFDPLNLA-EDPEAFSELKVKELKNGRL 252
Cdd:pfam00504  74 -------HAQSVPTLlALQILLLMGFLELARWQGGkapGLGGGGDRGYPGGfGFDPLGLAkKDPETLAELKLKELKNGRL 146

                         170
                  ....*....|...
gi 1063714186 253 AMFSMFGFFVQAI 265
Cdd:pfam00504 147 AMIAFLGFFVQEL 159
 
Name Accession Description Interval E-value
PLN00025 PLN00025
photosystem II light harvesting chlorophyll a/b binding protein; Provisional
 35-298 0e+00

photosystem II light harvesting chlorophyll a/b binding protein; Provisional


Pssm-ID: 215033 [Multi-domain]  Cd Length: 262  Bit Score: 557.82  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063714186  35 TSAIQHSSFAGQTTLKPSNDLLRKIGAsnggGRIIMRRTVKST--PQSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGW 112
Cdd:PLN00025    1 AMALSSTAFAGQAALKPPNELSRKVGN----GRVTMRKTVAKAagSGSIWYGPDRPKYLGPFSGETPSYLTGEFPGDYGW 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063714186 113 DTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILA 192
Cdd:PLN00025   77 DTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILA 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063714186 193 IWACQVVLMGFIEGYRIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 272
Cdd:PLN00025  157 IWACQVVLMGAVEGYRVNGGPLGEGLDPLYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 236

                         250       260
                  ....*....|....*....|....*.
gi 1063714186 273 ENLFDHIADPVANNAWAYATNFVPGK 298
Cdd:PLN00025  237 ENLADHLADPVANNAWAYATNFVPGK 262
PLN00171 PLN00171
photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
 79-291 5.28e-81

photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional


Pssm-ID: 215088  Cd Length: 324  Bit Score: 247.79  E-value: 5.28e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063714186  79 QSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNG-VK 157
Cdd:PLN00171  100 ESFWYGEERPRWLGPIPYDYPDHLTGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFGaVH 179

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063714186 158 FGEAVWFKAGSQIFSEGGLDYLGNPNL--IHAQSILAIWACQVVLMGFIEGYRIGGGplgEGLDPL---------YPGGA 226
Cdd:PLN00171  180 FAEPVWWRVGYAKLQGDTLDYLGIPGLhiAGSQGVIVIAICQALLMVGPEYARYCGI---EALEPLgiylpgdinYPGGA 256

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1063714186 227 -FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHIADPVANNAWAYA 291
Cdd:PLN00171  257 lFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVDHLSDPLHNNLLSSL 322
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
99-265 3.62e-64

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 199.07  E-value: 3.62e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063714186  99 PSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNGVKfGEAVWFKAGSQIFseggldy 178
Cdd:pfam00504   2 PAYLDGSLPGDYGFDPLGLSADPETFKRYREAELKHGRWAMLAVLGALVPEALGKLGGG-NEPVWFEAGAVAL------- 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063714186 179 lgnpnliHAQSILAI-WACQVVLMGFIEGYRIGGG---PLGEGLDPLYPGG-AFDPLNLA-EDPEAFSELKVKELKNGRL 252
Cdd:pfam00504  74 -------HAQSVPTLlALQILLLMGFLELARWQGGkapGLGGGGDRGYPGGfGFDPLGLAkKDPETLAELKLKELKNGRL 146

                         170
                  ....*....|...
gi 1063714186 253 AMFSMFGFFVQAI 265
Cdd:pfam00504 147 AMIAFLGFFVQEL 159
PLN00048 PLN00048
photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
 84-286 5.55e-51

photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional


Pssm-ID: 177680 [Multi-domain]  Cd Length: 262  Bit Score: 168.88  E-value: 5.55e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063714186  84 GPDRPKYLGpfSENTPSYLTGEYPGDYGWDTAGLSaDPET---FAKNREL---EVIHSRWAMLGALGCTFPEILSKNGVK 157
Cdd:PLN00048   39 GADRQLWFA--SKQSLSYLDGTLPGDFGFDPLGLS-DPEGaggFIEPQWLaygEVINGRFAMLGAAGAIAPEILGKAGLI 115

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063714186 158 FGEA--VWFKAGSqIFSEGGLDYLGNPnlihaqsiLAIWACQVVLMGFIEGYRIGG----GPLGE----GL--------D 219
Cdd:PLN00048  116 PQETalPWFQSGV-IPPAGTYDYWADP--------YTLFVLEMALMGFAEHRRAQDyykpGSMGKqyflGLekglggsgN 186

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1063714186 220 PLYPGGA-FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHIADPVANN 286
Cdd:PLN00048  187 PAYPGGPfFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVGPFQNLLDHLADPVNNN 254
PLN00147 PLN00147
light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
 32-286 1.19e-46

light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional


Pssm-ID: 215076 [Multi-domain]  Cd Length: 252  Bit Score: 157.35  E-value: 1.19e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063714186  32 AMATSAIQHSSFAGQTTLKPSNDLLRKIGASNGGgriimRRTVKSTPQSIWYGPDRPkylgpfsentPSYLTGEYPGDYG 111
Cdd:PLN00147    3 SMAGGTTGGFLHQPRDSSSHCTRSISSVAASSGG-----INPVVAQERPTWLPGLDP----------PPHLDGTLAGDFG 67

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063714186 112 WDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNGVKfGEAVWFKAGSQIFsegglDYLGNPNLIHAQSIL 191
Cdd:PLN00147   68 FDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTGIR-NLPVWYEAGAVKF-----EFASTRTLFVVQLLL 141

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063714186 192 AIWACQVVLMGFI-------EGYRIGGGPLGEGLDPLYPGGA-FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQ 263
Cdd:PLN00147  142 MGFAETKRYMDFVspgsqakEGSFFGLEAALEGLEPGYPGGPlFNPLGLAKDIENAHDWKLKEIKNGRLAMVAMLGFFVQ 221

                         250       260
                  ....*....|....*....|...
gi 1063714186 264 AIVTGKGPIENLFDHIADPVANN 286
Cdd:PLN00147  222 ASVTHTGPIDNLLTHLSDPWHKT 244
PLN00099 PLN00099
light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
 63-286 9.31e-44

light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional


Pssm-ID: 177717  Cd Length: 243  Bit Score: 149.41  E-value: 9.31e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063714186  63 NGGGRIIMrrtvkstpqSIWYGPDRPKylgpfsentPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGA 142
Cdd:PLN00099   36 NGSSRVTM---------SADWMPGQPR---------PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAV 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063714186 143 LGCTFPEILskngvkfGEAVWFKAGSQIFSEGG-LDYLGNPnlIHAQSILAIWACQVVLMGFIEGYRigggplGEGLDP- 220
Cdd:PLN00099   98 PGILVPEAL-------GLGNWVKAQEWAAIPGGqATYLGNP--VPWGTLPTILAIEFLAIAFVEHQR------SMEKDPe 162

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1063714186 221 --LYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENLFDHIADPVANN 286
Cdd:PLN00099  163 kkKYPGGAFDPLGYSKDPKKFEEYKVKEIKNGRLALLAFVGFCVqQSAYPGTGPLENLATHLADPWHNN 231
PLN00098 PLN00098
light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
 32-282 4.67e-43

light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional


Pssm-ID: 177716  Cd Length: 267  Bit Score: 148.52  E-value: 4.67e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063714186  32 AMATSAIQHSSFAGQTTLKPSNDLLRKIGASNGGGRIIMRRTVKSTPQSIW-----YGPDRPKYLgPFSeNTPSYLTGEY 106
Cdd:PLN00098    2 ALAIASSALSSLTLSTRRVPQKALRRPIVASQSGTGGRMKVRLNATKGGVSsvcepLPPDRPLWF-PGS-SPPEWLDGSL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063714186 107 PGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNGvkFGEAV-WFKAGSQifsegglDYLGNPNli 185
Cdd:PLN00098   80 PGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLG--FIENFsWYDAGAR-------EYFADPT-- 148

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063714186 186 haqsilAIWACQVVLMGFIEGYRIGG--GPLGEGLDPL------------YPGGA-FDPLNLAE-DPEAFSELKVKELKN 249
Cdd:PLN00098  149 ------TLFVVQMVLMGWAEGRRWADliKPGCVDIEPKlpnktnpkpdvgYPGGLwFDPMMWGRgSPEPVMVLRTKEIKN 222

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1063714186 250 GRLAMFSMFGFFVQAIVTGKGPIENLFDHIADP 282
Cdd:PLN00098  223 GRLAMLAFVGFCFQAVYTGEGPIENLMAHLADP 255
PLN00097 PLN00097
photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
 78-286 1.33e-40

photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional


Pssm-ID: 165670 [Multi-domain]  Cd Length: 244  Bit Score: 141.30  E-value: 1.33e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063714186  78 PQSIWYGPDRPKYLgPFSEnTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNGVK 157
Cdd:PLN00097   35 PGAVAAAADRPTWL-PGKA-AAAHLDGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGMA 112

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063714186 158 fGEAVWFKAGS-QIFseggldYLGNPNLIHAQSILAIWAcqvvlmgFIEGYRIGGGPLGEGLDPL-------------YP 223
Cdd:PLN00097  113 -DLPNWIDAAKwDGY------WAGAGPLFFIQMAMFNWA-------EIRRWQDMKAPGSMNEDPLfgankgdtntdvgYP 178

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1063714186 224 GGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHIADPVANN 286
Cdd:PLN00097  179 KGLFDKFGWAKDEKKAAELKLKEIANGRLAMLAFLGCCAQAIQTGTGPVDNLFSHLADPGHNG 241
PLN00187 PLN00187
photosystem II light-harvesting complex II protein Lhcb4; Provisional
 34-283 1.36e-38

photosystem II light-harvesting complex II protein Lhcb4; Provisional


Pssm-ID: 177781  Cd Length: 286  Bit Score: 137.23  E-value: 1.36e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063714186  34 ATSAIQHSSFAGQTTLKPSNdllrkigasnGGGRIIMR-----------RTVKSTPQSiwyGPDRPKYLgPfSENTPSYL 102
Cdd:PLN00187    1 TAAAAAASSFMGTRVPDVAS----------NSGRIVARfgfgkkkkaakKAKKKSSKV---GADRPLWF-P-GAKAPEWL 65

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063714186 103 TGEYPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHSRWAM 139
Cdd:PLN00187   66 DGSLVGDYGFDPFGLGKPAEylqfdldsldqNLAKNlagdvigtrteaseikstpfqpysevfglqrfRECELIHGRWAM 145

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063714186 140 LGALGCTFPEILSknGVkfgeaVWFKAGSQIFSEGGlDYLGNPnLIHAQSILaIWaCQVVLMGFIEGYRigggplGEGLD 219
Cdd:PLN00187  146 LATLGALSVEALT--GV-----TWQDAGKVELVDGS-SYLGQP-LPFSITTL-IW-IEVLVIGYIEFQR------NAELD 208

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1063714186 220 P---LYPGGA-FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHIADPV 283
Cdd:PLN00187  209 PekrLYPGGKfFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPL 276
PLN00100 PLN00100
light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
 99-286 1.79e-34

light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional


Pssm-ID: 215054  Cd Length: 246  Bit Score: 125.37  E-value: 1.79e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063714186  99 PSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILskngvkfGEAVWFKAGSQIFsegGLDY 178
Cdd:PLN00100   45 PKYLDGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAV-------GLPKFWEAGAEKY---GLDL 114

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063714186 179 lgnpnlihaQSILAIwacQVVLMGFIEGYRIGG-GPLGE-GLDPLYPggaFDPLNLaeDPEafsELKVKELKNGRLAMFS 256
Cdd:PLN00100  115 ---------QTLVLI---QVVVMAVLEAARYRGfMKTGEsGVLSFFP---FDPTGM--DSP---EMKVKEVKNGRLAMLA 174

                         170       180       190
                  ....*....|....*....|....*....|
gi 1063714186 257 MFGFFVQAIVTGKGPIENLFDHIADPVANN 286
Cdd:PLN00100  175 FLGMVSQYAVTGKSPLEGLKAHMANPGHVN 204
PLN00101 PLN00101
Photosystem I light-harvesting complex type 4 protein; Provisional
 98-285 1.70e-33

Photosystem I light-harvesting complex type 4 protein; Provisional


Pssm-ID: 215055 [Multi-domain]  Cd Length: 250  Bit Score: 123.10  E-value: 1.70e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063714186  98 TPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNGV-------KFGEAVWFKAGSQI 170
Cdd:PLN00101   62 SPGYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIinapqwyDAGKAEYFASSSTL 141

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063714186 171 FSEGGLDY----------LGNPNLIHAQSILaiwacqvvlmgfiEGYRIGGGPLGegldplYPGGAFDPLNLAEDPEAfs 240
Cdd:PLN00101  142 FVIEFILFhyveirrwqdIKNPGSVNQDPIF-------------KQYSLPPNEVG------YPGGIFNPLNFAPTEEA-- 200

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 1063714186 241 elKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHIADPVAN 285
Cdd:PLN00101  201 --KEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHN 243
PLN00170 PLN00170
photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
 32-275 6.08e-18

photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional


Pssm-ID: 215087 [Multi-domain]  Cd Length: 255  Bit Score: 81.52  E-value: 6.08e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063714186  32 AMATSAIQHSSFAGQTTL---KPSNDLLRKIGASNGGGRIIMRRTVKSTPQSIWYgpdrPKYLGPFSENTPSYLTGEYPG 108
Cdd:PLN00170    1 SAAATSGAVLNGLGSSFLtggKRSLALLVGTGAAKVGARTLLVVAAAAQPKKSWI----PAVKGGGNLVDPEWLDGSLPG 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063714186 109 DYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSknGVKfgeavWFKAGSQifseggldylgnPNLIHAQ 188
Cdd:PLN00170   77 DYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS--GIP-----WFEAGAD------------PGAIAPF 137

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063714186 189 SILAIWACQVVLMGFIEGYRIGG--GPLGEGL------------------DPLYPGGA-FDPLNLA---------EDPEA 238
Cdd:PLN00170  138 SFGSLLGTQLLLMGWVESKRWVDffNPDSQSVewatpwsrtaenfanatgLQGYPGGKfFDPLGLAgtvkdgvyiPDFEK 217

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 1063714186 239 FSELKVKELKNGRLAMFSMFGFFVQAiVTGKGPIENL 275
Cdd:PLN00170  218 LERLKLAEIKHARLAMVAMLIFYFEA-GQGKTPLGAL 253
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
227-270 3.19e-06

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 46.15  E-value: 3.19e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1063714186 227 FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKG 270
Cdd:pfam00504  15 FDPLGLSADPETFKRYREAELKHGRWAMLAVLGALVPEALGKLG 58
PLN00089 PLN00089
fucoxanthin-chlorophyll a/c binding protein; Provisional
 77-270 4.13e-06

fucoxanthin-chlorophyll a/c binding protein; Provisional


Pssm-ID: 177710 [Multi-domain]  Cd Length: 209  Bit Score: 46.60  E-value: 4.13e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063714186  77 TPQSIWYGPDRPKYLGpfSENTPSYLTGE--------YPGDYGWDTAGLSADPETFAK-NRELEVIHSRWAMLGALGCTF 147
Cdd:PLN00089   18 PAQKSRTRPATPTAAA--EDDCPGAIGFAakefmfigKTGSKKFDPLGLAEKVEEFLPwFRESELKHGRAAMLAVAGFIA 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063714186 148 PEILSKNgvkfGEAVWFKAgsqifseggldylgNPNLIHAQSILAIWACQVVLM---GFIEGYRIGGGPLGEGLDPLYPG 224
Cdd:PLN00089   96 PDFVRIP----GEAYSFAA--------------IPKTIDAHDALLKSGAMIQIFawiGFVDLAVSAPAAAAAAEFDRTPG 157

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1063714186 225 G-AFDPLNLA-EDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKG 270
Cdd:PLN00089  158 DfGFDLLALYpKDAAKMEKKKDKELKNGRLAMVAIGGIATGSAITGHG 205
PLN00120 PLN00120
fucoxanthin-chlorophyll a-c binding protein; Provisional
 223-264 7.93e-04

fucoxanthin-chlorophyll a-c binding protein; Provisional


Pssm-ID: 215063  Cd Length: 202  Bit Score: 39.73  E-value: 7.93e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1063714186 223 PGGAFDPLNLAE--DPEAFSELKVKELKNGRLAMFSMFGFFVQA 264
Cdd:PLN00120   43 PLGFFDPLGLVDdgDQEKFDRLRYVEIKHGRISMLAVVGYLVTE 86
PLN00120 PLN00120
fucoxanthin-chlorophyll a-c binding protein; Provisional
 112-272 3.89e-03

fucoxanthin-chlorophyll a-c binding protein; Provisional


Pssm-ID: 215063  Cd Length: 202  Bit Score: 37.80  E-value: 3.89e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063714186 112 WDTAGL--SADPETFAKNRELEVIHSRWAMLGAL-------GCTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLdylgnp 182
Cdd:PLN00120   47 FDPLGLvdDGDQEKFDRLRYVEIKHGRISMLAVVgylvteaGIRLPGDIDYSGTSFSDIPNGFAALDAIPTAGL------ 120

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063714186 183 nlihAQSILAIWACQVVLMGFIEGyrigggpLGEgldplYPG----GAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMF 258
Cdd:PLN00120  121 ----LQILAFIGFLELAVMKDITG-------EGE-----FVGdfrnGYIDFGWDSFDEETKLKKRAIELNQGRAAQMGIL 184

                         170
                  ....*....|....
gi 1063714186 259 GFFVQAIVTGKGPI 272
Cdd:PLN00120  185 ALMVHEQLGVELPI 198
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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