Homeodomain-like superfamily protein [Arabidopsis thaliana]
Protein Classification
SANT/Myb-like DNA-binding domain-containing protein( domain architecture ID 229385)
SANT (SWI3, ADA2, N-CoR and TFIIIB)/Myb-like DNA-binding domain-containing protein binds DNA and may function as a transcription factor; similar to Arabidopsis thaliana protein CCA1 and protein REVEILLE
List of domain hits
| Name | Accession | Description | Interval | E-value | ||
| SANT super family | cl21498 | 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ... |
10-35 | 8.28e-05 | ||
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. The actual alignment was detected with superfamily member TIGR01557: Pssm-ID: 473887 [Multi-domain] Cd Length: 57 Bit Score: 39.31 E-value: 8.28e-05
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| Name | Accession | Description | Interval | E-value | ||
| myb_SHAQKYF | TIGR01557 | myb-like DNA-binding domain, SHAQKYF class; This model describes a DNA-binding domain ... |
10-35 | 8.28e-05 | ||
myb-like DNA-binding domain, SHAQKYF class; This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif. Pssm-ID: 130620 [Multi-domain] Cd Length: 57 Bit Score: 39.31 E-value: 8.28e-05
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| Myb_DNA-binding | pfam00249 | Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ... |
7-32 | 5.76e-03 | ||
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Pssm-ID: 459731 [Multi-domain] Cd Length: 46 Bit Score: 33.63 E-value: 5.76e-03
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| Name | Accession | Description | Interval | E-value | ||
| myb_SHAQKYF | TIGR01557 | myb-like DNA-binding domain, SHAQKYF class; This model describes a DNA-binding domain ... |
10-35 | 8.28e-05 | ||
myb-like DNA-binding domain, SHAQKYF class; This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif. Pssm-ID: 130620 [Multi-domain] Cd Length: 57 Bit Score: 39.31 E-value: 8.28e-05
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| Myb_DNA-binding | pfam00249 | Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ... |
7-32 | 5.76e-03 | ||
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Pssm-ID: 459731 [Multi-domain] Cd Length: 46 Bit Score: 33.63 E-value: 5.76e-03
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| Blast search parameters | ||||
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