Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]
Protein Classification
pentatricopeptide repeat-containing protein( domain architecture ID 1006637)
pentatricopeptide repeat (PPR)-containing protein may form anti-parallel alpha helices and bind single-stranded RNA in a sequence-specific and modular manner; similar to Schizosaccharomyces pombe mitochondrial pentatricopeptide repeat-containing protein 8, a mitochondrial RNA-binding protein involved in mitochondrial translation
List of domain hits
| Name | Accession | Description | Interval | E-value | ||
| PPR_3 super family | cl37870 | Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ... |
264-319 | 3.50e-03 | ||
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana. The actual alignment was detected with superfamily member pfam13812: Pssm-ID: 316342 [Multi-domain] Cd Length: 63 Bit Score: 36.18 E-value: 3.50e-03
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| Name | Accession | Description | Interval | E-value | ||
| PPR_3 | pfam13812 | Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ... |
264-319 | 3.50e-03 | ||
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana. Pssm-ID: 316342 [Multi-domain] Cd Length: 63 Bit Score: 36.18 E-value: 3.50e-03
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| Name | Accession | Description | Interval | E-value | ||
| PPR_3 | pfam13812 | Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ... |
264-319 | 3.50e-03 | ||
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana. Pssm-ID: 316342 [Multi-domain] Cd Length: 63 Bit Score: 36.18 E-value: 3.50e-03
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