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Conserved domains on  [gi|1063736326|ref|NP_001330034|]
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RNI-like superfamily protein [Arabidopsis thaliana]

Protein Classification

leucine-rich repeat domain-containing protein( domain architecture ID 1001123)

leucine-rich repeat (LRR) domain-containing protein may participate in protein-protein interactions; similar to Oryctolagus cuniculus monocyte differentiation antigen CD14, a coreceptor for bacterial lipopolysaccharide

Gene Ontology:  GO:0005515
PubMed:  11751054

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LRR super family cl34836
Leucine-rich repeat (LRR) protein [Transcription];
447-586 3.00e-07

Leucine-rich repeat (LRR) protein [Transcription];


The actual alignment was detected with superfamily member COG4886:

Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 53.40  E-value: 3.00e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063736326 447 KNLKRMIKLKLLSFQGiSRIERLDDAVCKLRDLIILDLRACyNLEKLPDKIDSLKALIYLDITDCYmIDRMPKRLSWLDN 526
Cdd:COG4886   130 EELANLTNLKELDLSN-NQLTDLPEPLGNLTNLKSLDLSNN-QLTDLPEELGNLTNLKELDLSNNQ-ITDLPEPLGNLTN 206

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1063736326 527 LEVLkgfVVSDatdeetvCTL----AELVHLKKLRKLSISINKenfsIDDvFVAVKSFKKLEKL 586
Cdd:COG4886   207 LEEL---DLSG-------NQLtdlpEPLANLTNLETLDLSNNQ----LTD-LPELGNLTNLEEL 255
 
Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
447-586 3.00e-07

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 53.40  E-value: 3.00e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063736326 447 KNLKRMIKLKLLSFQGiSRIERLDDAVCKLRDLIILDLRACyNLEKLPDKIDSLKALIYLDITDCYmIDRMPKRLSWLDN 526
Cdd:COG4886   130 EELANLTNLKELDLSN-NQLTDLPEPLGNLTNLKSLDLSNN-QLTDLPEELGNLTNLKELDLSNNQ-ITDLPEPLGNLTN 206

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1063736326 527 LEVLkgfVVSDatdeetvCTL----AELVHLKKLRKLSISINKenfsIDDvFVAVKSFKKLEKL 586
Cdd:COG4886   207 LEEL---DLSG-------NQLtdlpEPLANLTNLETLDLSNNQ----LTD-LPELGNLTNLEEL 255
 
Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
447-586 3.00e-07

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 53.40  E-value: 3.00e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063736326 447 KNLKRMIKLKLLSFQGiSRIERLDDAVCKLRDLIILDLRACyNLEKLPDKIDSLKALIYLDITDCYmIDRMPKRLSWLDN 526
Cdd:COG4886   130 EELANLTNLKELDLSN-NQLTDLPEPLGNLTNLKSLDLSNN-QLTDLPEELGNLTNLKELDLSNNQ-ITDLPEPLGNLTN 206

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1063736326 527 LEVLkgfVVSDatdeetvCTL----AELVHLKKLRKLSISINKenfsIDDvFVAVKSFKKLEKL 586
Cdd:COG4886   207 LEEL---DLSG-------NQLtdlpEPLANLTNLETLDLSNNQ----LTD-LPELGNLTNLEEL 255
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
444-565 1.18e-06

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 51.47  E-value: 1.18e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063736326 444 ELMKNLKRMIKLKLLSFQGiSRIERLDDAVCKLRDLIILDLRACyNLEKLPDKIDSLKALIYLDITDCYMIDrMPKRLSW 523
Cdd:COG4886   150 DLPEPLGNLTNLKSLDLSN-NQLTDLPEELGNLTNLKELDLSNN-QITDLPEPLGNLTNLEELDLSGNQLTD-LPEPLAN 226

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1063736326 524 LDNLEVLKgfvVSDATdeetVCTLAELVHLKKLRKLSISINK 565
Cdd:COG4886   227 LTNLETLD---LSNNQ----LTDLPELGNLTNLEELDLSNNQ 261
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
408-589 8.59e-06

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 48.78  E-value: 8.59e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063736326 408 TRNKLTLSKVTYQKLKVFYLGRWERTAKRHIEVENPELMKNLKRMIKLKLLSFQGISRIErlddavcKLRDLIILDLRAC 487
Cdd:COG4886    51 LLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGNEELS-------NLTNLESLDLSGN 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063736326 488 yNLEKLPDKIDSLKALIYLDITDCYmIDRMPKRLSWLDNLEVLkgfvvsDATDeetvCTL----AELVHLKKLRKLSISI 563
Cdd:COG4886   124 -QLTDLPEELANLTNLKELDLSNNQ-LTDLPEPLGNLTNLKSL------DLSN----NQLtdlpEELGNLTNLKELDLSN 191

                         170       180
                  ....*....|....*....|....*.
gi 1063736326 564 NKenfsIDDVFVAVKSFKKLEKLKVA 589
Cdd:COG4886   192 NQ----ITDLPEPLGNLTNLEELDLS 213
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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