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Conserved domains on  [gi|1063743707|ref|NP_001330144|]
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DA1-related protein 6 [Arabidopsis thaliana]

Protein Classification

LIM_DA1 and DA1-like domain-containing protein( domain architecture ID 10175213)

LIM_DA1 and DA1-like domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
DA1-like pfam12315
Protein DA1; Proteins in this family include protein DA1 and its homologs. In Arabidopsis ...
419-633 1.61e-127

Protein DA1; Proteins in this family include protein DA1 and its homologs. In Arabidopsis thaliana, DA1 is an ubiquitin receptor that limits final seed and organ size by restricting the period of cell proliferation. It may act maternally to control seed mass.


:

Pssm-ID: 463530  Cd Length: 214  Bit Score: 374.36  E-value: 1.61e-127
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063743707 419 GLNMKIEKEFPFLLVEKQALNKAEKEEKIDYQYEVVTRGICLSEEQIVDSVSQRPVRGPNNKLVGMATESQKVTRECEVT 498
Cdd:pfam12315   1 GLNMKVEQEIPLLLVERQALNEAEEGEKIGHHHGPETRGLCLSEEQTVTSVLRRPRIGPGNRLVDMRTEPQRLTRRCEVT 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063743707 499 AILILYGLPRLLTGYILAHEMMHAYLRLNGHRNLNNILEEGICQVLGHLWLDSQTYatADATADASSSASSSSRTPPAAS 578
Cdd:pfam12315  81 AILVLYGLPRLLTGSILAHEMMHAWLRLNGYRNLNPEVEEGICQVLAHMWLESEIY--AGSSATAASSSSSSSDSSSSSS 158
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1063743707 579 ASKKGEWSDFDKKLVEFCKNQIETDDSPVYGLGFRTVNEMVTNSSLQETLKEILR 633
Cdd:pfam12315 159 SSKKGEKSQFEKKLGEFFKHQIETDTSPVYGDGFRAANAAVNKYGLRRTLDHIRR 213
LIM_DA1 cd09396
The Lim domain of DA1; The Lim domain of DA1: DA1 contains one copy of LIM domain and a domain ...
277-332 7.30e-20

The Lim domain of DA1; The Lim domain of DA1: DA1 contains one copy of LIM domain and a domain of unknown function. DA1 is predicted as an ubiquitin receptor, which sets final seed and organ size by restricting the period of cell proliferation. The LIM domain is 50-60 amino acids in size and shares two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein.


:

Pssm-ID: 188782 [Multi-domain]  Cd Length: 53  Bit Score: 83.07  E-value: 7.30e-20
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1063743707 277 CGGCNFAVEHGGSVNILGVLWHPGCFCCRACHKPIAIHdiENHVSNSRgKFHKSCY 332
Cdd:cd09396     1 CAGCKSEIGHGRFLSALGAVWHPECFRCHACRKPIAEH--EFSVSGND-PYHKSCY 53
Smc super family cl34174
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
18-211 1.19e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


The actual alignment was detected with superfamily member COG1196:

Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 42.23  E-value: 1.19e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063743707  18 EAETIHVIEVSQHEADIQKAKQRslATHEAEKLDLATHEAEQLDLAIQEFSRQEEEEERRRTRELENDAQIANVLQhEER 97
Cdd:COG1196   288 AEEYELLAELARLEQDIARLEER--RRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELA-EAE 364
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063743707  98 ERLINKKTALEDEEDELLARTLEESLKENNRRKMFEEQVNKDEQLALIVQESLNMEEYPIRLEEYKSISRRAPLDVDEQF 177
Cdd:COG1196   365 EALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEAL 444
                         170       180       190
                  ....*....|....*....|....*....|....
gi 1063743707 178 AKAVKESLKNKGKGKQFEDEQVKKDEQLALIVQE 211
Cdd:COG1196   445 EEAAEEEAELEEEEEALLELLAELLEEAALLEAA 478
 
Name Accession Description Interval E-value
DA1-like pfam12315
Protein DA1; Proteins in this family include protein DA1 and its homologs. In Arabidopsis ...
419-633 1.61e-127

Protein DA1; Proteins in this family include protein DA1 and its homologs. In Arabidopsis thaliana, DA1 is an ubiquitin receptor that limits final seed and organ size by restricting the period of cell proliferation. It may act maternally to control seed mass.


Pssm-ID: 463530  Cd Length: 214  Bit Score: 374.36  E-value: 1.61e-127
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063743707 419 GLNMKIEKEFPFLLVEKQALNKAEKEEKIDYQYEVVTRGICLSEEQIVDSVSQRPVRGPNNKLVGMATESQKVTRECEVT 498
Cdd:pfam12315   1 GLNMKVEQEIPLLLVERQALNEAEEGEKIGHHHGPETRGLCLSEEQTVTSVLRRPRIGPGNRLVDMRTEPQRLTRRCEVT 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063743707 499 AILILYGLPRLLTGYILAHEMMHAYLRLNGHRNLNNILEEGICQVLGHLWLDSQTYatADATADASSSASSSSRTPPAAS 578
Cdd:pfam12315  81 AILVLYGLPRLLTGSILAHEMMHAWLRLNGYRNLNPEVEEGICQVLAHMWLESEIY--AGSSATAASSSSSSSDSSSSSS 158
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1063743707 579 ASKKGEWSDFDKKLVEFCKNQIETDDSPVYGLGFRTVNEMVTNSSLQETLKEILR 633
Cdd:pfam12315 159 SSKKGEKSQFEKKLGEFFKHQIETDTSPVYGDGFRAANAAVNKYGLRRTLDHIRR 213
LIM_DA1 cd09396
The Lim domain of DA1; The Lim domain of DA1: DA1 contains one copy of LIM domain and a domain ...
277-332 7.30e-20

The Lim domain of DA1; The Lim domain of DA1: DA1 contains one copy of LIM domain and a domain of unknown function. DA1 is predicted as an ubiquitin receptor, which sets final seed and organ size by restricting the period of cell proliferation. The LIM domain is 50-60 amino acids in size and shares two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein.


Pssm-ID: 188782 [Multi-domain]  Cd Length: 53  Bit Score: 83.07  E-value: 7.30e-20
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1063743707 277 CGGCNFAVEHGGSVNILGVLWHPGCFCCRACHKPIAIHdiENHVSNSRgKFHKSCY 332
Cdd:cd09396     1 CAGCKSEIGHGRFLSALGAVWHPECFRCHACRKPIAEH--EFSVSGND-PYHKSCY 53
LIM pfam00412
LIM domain; This family represents two copies of the LIM structural domain.
277-312 5.60e-05

LIM domain; This family represents two copies of the LIM structural domain.


Pssm-ID: 395333 [Multi-domain]  Cd Length: 57  Bit Score: 41.16  E-value: 5.60e-05
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1063743707 277 CGGCNFAVEHGGSVNILGVLWHPGCFCCRACHKPIA 312
Cdd:pfam00412   1 CAGCNRPIYDRELVRALGKVWHPECFRCAVCGKPLT 36
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
18-211 1.19e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 42.23  E-value: 1.19e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063743707  18 EAETIHVIEVSQHEADIQKAKQRslATHEAEKLDLATHEAEQLDLAIQEFSRQEEEEERRRTRELENDAQIANVLQhEER 97
Cdd:COG1196   288 AEEYELLAELARLEQDIARLEER--RRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELA-EAE 364
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063743707  98 ERLINKKTALEDEEDELLARTLEESLKENNRRKMFEEQVNKDEQLALIVQESLNMEEYPIRLEEYKSISRRAPLDVDEQF 177
Cdd:COG1196   365 EALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEAL 444
                         170       180       190
                  ....*....|....*....|....*....|....
gi 1063743707 178 AKAVKESLKNKGKGKQFEDEQVKKDEQLALIVQE 211
Cdd:COG1196   445 EEAAEEEAELEEEEEALLELLAELLEEAALLEAA 478
LIM smart00132
Zinc-binding domain present in Lin-11, Isl-1, Mec-3; Zinc-binding domain family. Some LIM ...
277-312 1.34e-03

Zinc-binding domain present in Lin-11, Isl-1, Mec-3; Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.


Pssm-ID: 214528 [Multi-domain]  Cd Length: 54  Bit Score: 36.98  E-value: 1.34e-03
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 1063743707  277 CGGCNFAVEHGG-SVNILGVLWHPGCFCCRACHKPIA 312
Cdd:smart00132   2 CAGCGKPIYGTErVLRALGKVWHPECFKCATCGKPLS 38
PTZ00121 PTZ00121
MAEBL; Provisional
13-262 2.25e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 41.28  E-value: 2.25e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063743707   13 SEDRFEAETIHVIEVSQHEADIQKAKQRSLA--THEAEKLDLAtHEAEQLDLAIQEFSRQEEEEERRRTRELENDAQIAN 90
Cdd:PTZ00121  1518 AEEAKKADEAKKAEEAKKADEAKKAEEKKKAdeLKKAEELKKA-EEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEE 1596
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063743707   91 VLQHEERERLINKKTALEDEEDELLARTL----EESLKENNRRKMFEEQVNKDEQLalivqeslnmeeypiRLEEYKSIS 166
Cdd:PTZ00121  1597 VMKLYEEEKKMKAEEAKKAEEAKIKAEELkkaeEEKKKVEQLKKKEAEEKKKAEEL---------------KKAEEENKI 1661
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063743707  167 RRAPLDVDEQFAKAVKESLKNKGKGKQFEDEQVKKD-------EQLALIVQESLNMVESPPRLEENNNISTRAPVDEDEQ 239
Cdd:PTZ00121  1662 KAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEaeeakkaEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEE 1741
                          250       260
                   ....*....|....*....|....*.
gi 1063743707  240 LAKAVEESLKGKGQ---IKQSKDEVE 262
Cdd:PTZ00121  1742 DKKKAEEAKKDEEEkkkIAHLKKEEE 1767
 
Name Accession Description Interval E-value
DA1-like pfam12315
Protein DA1; Proteins in this family include protein DA1 and its homologs. In Arabidopsis ...
419-633 1.61e-127

Protein DA1; Proteins in this family include protein DA1 and its homologs. In Arabidopsis thaliana, DA1 is an ubiquitin receptor that limits final seed and organ size by restricting the period of cell proliferation. It may act maternally to control seed mass.


Pssm-ID: 463530  Cd Length: 214  Bit Score: 374.36  E-value: 1.61e-127
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063743707 419 GLNMKIEKEFPFLLVEKQALNKAEKEEKIDYQYEVVTRGICLSEEQIVDSVSQRPVRGPNNKLVGMATESQKVTRECEVT 498
Cdd:pfam12315   1 GLNMKVEQEIPLLLVERQALNEAEEGEKIGHHHGPETRGLCLSEEQTVTSVLRRPRIGPGNRLVDMRTEPQRLTRRCEVT 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063743707 499 AILILYGLPRLLTGYILAHEMMHAYLRLNGHRNLNNILEEGICQVLGHLWLDSQTYatADATADASSSASSSSRTPPAAS 578
Cdd:pfam12315  81 AILVLYGLPRLLTGSILAHEMMHAWLRLNGYRNLNPEVEEGICQVLAHMWLESEIY--AGSSATAASSSSSSSDSSSSSS 158
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1063743707 579 ASKKGEWSDFDKKLVEFCKNQIETDDSPVYGLGFRTVNEMVTNSSLQETLKEILR 633
Cdd:pfam12315 159 SSKKGEKSQFEKKLGEFFKHQIETDTSPVYGDGFRAANAAVNKYGLRRTLDHIRR 213
LIM_DA1 cd09396
The Lim domain of DA1; The Lim domain of DA1: DA1 contains one copy of LIM domain and a domain ...
277-332 7.30e-20

The Lim domain of DA1; The Lim domain of DA1: DA1 contains one copy of LIM domain and a domain of unknown function. DA1 is predicted as an ubiquitin receptor, which sets final seed and organ size by restricting the period of cell proliferation. The LIM domain is 50-60 amino acids in size and shares two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein.


Pssm-ID: 188782 [Multi-domain]  Cd Length: 53  Bit Score: 83.07  E-value: 7.30e-20
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1063743707 277 CGGCNFAVEHGGSVNILGVLWHPGCFCCRACHKPIAIHdiENHVSNSRgKFHKSCY 332
Cdd:cd09396     1 CAGCKSEIGHGRFLSALGAVWHPECFRCHACRKPIAEH--EFSVSGND-PYHKSCY 53
LIM cd08368
LIM is a small protein-protein interaction domain, containing two zinc fingers; LIM domains ...
277-339 3.94e-06

LIM is a small protein-protein interaction domain, containing two zinc fingers; LIM domains are identified in a diverse group of proteins with wide variety of biological functions, including gene expression regulation, cell fate determination, cytoskeleton organization, tumor formation and development. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. They perform their functions through interactions with other protein partners. LIM domains are 50-60 amino acids in size and share two characteristic highly conserved zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. The consensus sequence of LIM domain has been defined as C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] (where X denotes any amino acid).


Pssm-ID: 259829 [Multi-domain]  Cd Length: 53  Bit Score: 44.23  E-value: 3.94e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1063743707 277 CGGCNFAVEHGGSVNILGVLWHPGCFCCRACHKPIAihdienhvsnsrgkfHKSCYER----YCYVC 339
Cdd:cd08368     1 CAGCGKPIEGRELLRALGKKWHPECFKCAECGKPLG---------------GDSFYEKdgkpYCEKC 52
LIM3_Paxillin_like cd09338
The third LIM domain of the paxillin like protein family; The third LIM domain of the paxillin ...
277-310 1.14e-05

The third LIM domain of the paxillin like protein family; The third LIM domain of the paxillin like protein family: This family consists of paxillin, leupaxin, Hic-5 (ARA55), and other related proteins. There are four LIM domains in the C-terminal of the proteins and leucine-rich LD-motifs in the N-terminal region. Members of this family are adaptor proteins to recruit key components of signal-transduction machinery to specific sub-cellular locations. Paxillin is found at the interface between the plasma membrane and the actin cytoskeleton. Paxillin serves as a platform for the recruitment of numerous regulatory and structural proteins that together control the dynamic changes in cell adhesion, cytoskeletal reorganization and gene expression that are necessary for cell migration and survival. Leupaxin is a cytoskeleton adaptor protein, which is preferentially expressed in hematopoietic cells. It associates with focal adhesion kinases PYK2 and pp125FAK and identified to be a component of the osteoclast pososomal signaling complex. Hic-5 controls cell proliferation, migration and senescence by functioning as coactivator for steroid receptors such as androgen receptor, glucocorticoid receptor and progesterone receptor. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes.


Pssm-ID: 188724 [Multi-domain]  Cd Length: 53  Bit Score: 43.09  E-value: 1.14e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1063743707 277 CGGCNFAVEhGGSVNILGVLWHPGCFCCRACHKP 310
Cdd:cd09338     1 CGGCNKPIL-ENYISALNTQWHPECFVCRECHKP 33
LIM pfam00412
LIM domain; This family represents two copies of the LIM structural domain.
277-312 5.60e-05

LIM domain; This family represents two copies of the LIM structural domain.


Pssm-ID: 395333 [Multi-domain]  Cd Length: 57  Bit Score: 41.16  E-value: 5.60e-05
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1063743707 277 CGGCNFAVEHGGSVNILGVLWHPGCFCCRACHKPIA 312
Cdd:pfam00412   1 CAGCNRPIYDRELVRALGKVWHPECFRCAVCGKPLT 36
LIM3_abLIM cd09329
The third LIM domain of actin binding LIM (abLIM) proteins; The third LIM domain of actin ...
277-312 1.81e-04

The third LIM domain of actin binding LIM (abLIM) proteins; The third LIM domain of actin binding LIM (abLIM) proteins: Three homologous members of the abLIM protein family have been identified; abLIM-1, abLIM-2 and abLIM-3. The N-terminal of abLIM consists of four tandem repeats of LIM domains and the C-terminal of acting binding LIM protein is a villin headpiece domain, which has strong actin binding activity. The abLIM-1, which is expressed in retina, brain, and muscle tissue, has been indicated to function as a tumor suppressor. AbLIM-2 and -3, mainly expressed in muscle and neuronal tissue, bind to F-actin strongly. They may serve as a scaffold for signaling modules of the actin cytoskeleton and thereby modulate transcription. It has shown that LIM domains of abLIMs interact with STARS (striated muscle activator of Rho signaling), which directly binds actin and stimulates serum-response factor (SRF)-dependent transcription. All LIM domains are 50-60 amino acids in size and share two characteristic highly conserved zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes.


Pssm-ID: 188715 [Multi-domain]  Cd Length: 52  Bit Score: 39.61  E-value: 1.81e-04
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1063743707 277 CGGCNFAVEHGGSVNILGVLWHPGCFCCRACHKPIA 312
Cdd:cd09329     1 CAGCGQEIKNGQALLALDKQWHVWCFKCKECGKVLT 36
LIM1_Lrg1p_like cd09391
The first LIM domain of Lrg1p, a LIM and RhoGap domain containing protein; The first LIM ...
277-312 2.84e-04

The first LIM domain of Lrg1p, a LIM and RhoGap domain containing protein; The first LIM domain of Lrg1p, a LIM and RhoGap domain containing protein: The members of this family contain three tandem repeats of LIM domains and a Rho-type GTPase activating protein (RhoGap) domain. Lrg1p is a Rho1 GTPase-activating protein required for efficient cell fusion in yeast. Lrg1p-GAP domain strongly and specifically stimulates the GTPase activity of Rho1p, a regulator of beta (1-3)-glucan synthase in vitro. The LIM domain is 50-60 amino acids in size and shares two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein.


Pssm-ID: 188777  Cd Length: 57  Bit Score: 39.21  E-value: 2.84e-04
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1063743707 277 CGGCNFAVEhGGSVNILGVLWHPGCFCCRACHKPIA 312
Cdd:cd09391     1 CAKCGKPIT-GQFVRALGDVYHLDCFTCHDCGKPVA 35
LIM3_Enigma_like cd09363
The third LIM domain of Enigma-like family; The third LIM domain of Enigma-like family: The ...
277-308 6.56e-04

The third LIM domain of Enigma-like family; The third LIM domain of Enigma-like family: The Enigma LIM domain family is comprised of three members: Enigma, ENH, and Cypher (mouse)/ZASP (human). These subfamily members contain a single PDZ domain at the N-terminus and three LIM domains at the C-terminus. Enigma was initially characterized in humans and is expressed in multiple tissues, such as skeletal muscle, heart, bone, and brain. The third LIM domain specifically interacts with the insulin receptor and the second LIM domain interacts with the receptor tyrosine kinase Ret and the adaptor protein APS. Thus Enigma is implicated in signal transduction processes, such as mitogenic activity, insulin related actin organization, and glucose metabolism. The second member, ENH protein, was first identified in rat brain. It has been shown that ENH interacts with protein kinase D1 (PKD1) via its LIM domains and forms a complex with PKD1 and the alpha1C subunit of cardiac L-type voltage-gated calcium channel in rat neonatal cardiomyocytes. The N-terminal PDZ domain interacts with alpha-actinin at the Z-line. ZASP/Cypher is required for maintenance of Z-line structure during muscle contraction, but not required for Z-line assembly. In heart, Cypher/ZASP plays a structural role through its interaction with cytoskeletal Z-line proteins. In addition, there is increasing evidence that Cypher/ZASP also performs signaling functions. Studies reveal that Cypher/ZASP interacts with and directs PKC to the Z-line, where PKC phosphorylates downstream signaling targets. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes.


Pssm-ID: 188749 [Multi-domain]  Cd Length: 54  Bit Score: 38.19  E-value: 6.56e-04
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1063743707 277 CGGCNFAVEHGGS-VNILGVLWHPGCFCCRACH 308
Cdd:cd09363     1 CHGCDFPIEAGDRfLEALGHTWHDTCFVCAVCH 33
LIM2_PINCH cd09332
The second LIM domain of protein PINCH; The second LIM domain of protein PINCH: PINCH plays a ...
277-312 1.07e-03

The second LIM domain of protein PINCH; The second LIM domain of protein PINCH: PINCH plays a pivotal role in the assembly of focal adhesions (FAs), regulating diverse functions in cell adhesion, growth, and differentiation through LIM-mediated protein-protein interactions. PINCH comprises an array of five LIM domains that interact with integrin-linked kinase (ILK), Nck2 (also called Nckbeta or Grb4) and other interaction partners. These interactions are essential for triggering the FA assembly and for relaying diverse mechanical and biochemical signals between Cell-extracellular matrix and the actin cytoskeleton. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes.


Pssm-ID: 188718 [Multi-domain]  Cd Length: 52  Bit Score: 37.32  E-value: 1.07e-03
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1063743707 277 CGGCN-FAVehGGSVNILGVLWHPGCFCCRACHKPIA 312
Cdd:cd09332     1 CGKCGeFVI--GRVIKAMNNNWHPDCFRCEICNKELA 35
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
18-211 1.19e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 42.23  E-value: 1.19e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063743707  18 EAETIHVIEVSQHEADIQKAKQRslATHEAEKLDLATHEAEQLDLAIQEFSRQEEEEERRRTRELENDAQIANVLQhEER 97
Cdd:COG1196   288 AEEYELLAELARLEQDIARLEER--RRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELA-EAE 364
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063743707  98 ERLINKKTALEDEEDELLARTLEESLKENNRRKMFEEQVNKDEQLALIVQESLNMEEYPIRLEEYKSISRRAPLDVDEQF 177
Cdd:COG1196   365 EALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEAL 444
                         170       180       190
                  ....*....|....*....|....*....|....
gi 1063743707 178 AKAVKESLKNKGKGKQFEDEQVKKDEQLALIVQE 211
Cdd:COG1196   445 EEAAEEEAELEEEEEALLELLAELLEEAALLEAA 478
LIM1_LIMPETin cd09414
The first LIM domain of protein LIMPETin; The first LIM domain of protein LIMPETin: LIMPETin ...
277-307 1.22e-03

The first LIM domain of protein LIMPETin; The first LIM domain of protein LIMPETin: LIMPETin contains 6 LIM domains at the C-terminal and an N-terminal PET domain. Four of the six LIM domains are highly homologous to the four and half LIM domain protein family and two of them show sequence similarity to the LIM domains of the Testin family. Thus, LIMPETin may be the recombinant product of genes coding testin and FHL proteins. In Schistosoma mansoni, where LIMPETin was first identified, LIMPETin is down regulated in sexually mature adult Schistosoma females compared to sexually immature adult females and adult male. Its differential expression indicates that it is a transcription regulator. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes.


Pssm-ID: 188798 [Multi-domain]  Cd Length: 58  Bit Score: 37.38  E-value: 1.22e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1063743707 277 CGGCNFAVEHG-----GSVNILGVLWHPGCFCCRAC 307
Cdd:cd09414     1 CGGCSEPLKYGelavtAPKFGESLLWHPACFRCSTC 36
LIM smart00132
Zinc-binding domain present in Lin-11, Isl-1, Mec-3; Zinc-binding domain family. Some LIM ...
277-312 1.34e-03

Zinc-binding domain present in Lin-11, Isl-1, Mec-3; Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.


Pssm-ID: 214528 [Multi-domain]  Cd Length: 54  Bit Score: 36.98  E-value: 1.34e-03
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 1063743707  277 CGGCNFAVEHGG-SVNILGVLWHPGCFCCRACHKPIA 312
Cdd:smart00132   2 CAGCGKPIYGTErVLRALGKVWHPECFKCATCGKPLS 38
LIM1_CRP2 cd09480
The first LIM domain of Cysteine Rich Protein 2 (CRP2); The first LIM domain of Cysteine Rich ...
277-332 1.80e-03

The first LIM domain of Cysteine Rich Protein 2 (CRP2); The first LIM domain of Cysteine Rich Protein 2 (CRP2): The CRP family members include CRP1, CRP2, CRP3/MLP and TLP. CRP1, CRP2 and CRP3 share a conserved nuclear targeting signal (K/R-K/R-Y-G-P-K), which supports the fact that these proteins function not only in the cytoplasm but also in the nucleus. CRPs control regulatory pathways during cellular differentiation, and involve in complex transcription circuits, and the organization as well as the arrangement of the myofibrillar/cytoskeletal network. CRP2 specifically binds to protein inhibitor of activated STAT-1 (PIAS1) and a novel human protein designed CRP2BP (for CRP2 binding partner). PIAS1 specifically inhibits the STAT-1 pathway and CRP2BP is homologous to members of the histone acetyltransferase family raising the possibility that CRP2 is a modulator of cytokine-controlled pathways or is functionally active in the transcriptional regulatory network. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes.


Pssm-ID: 188864  Cd Length: 55  Bit Score: 36.89  E-value: 1.80e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1063743707 277 CGGCNFAVEHGGSVNILGVLWHPGCFCCRACHK-----PIAIHDIENHVsnsrgkfhKSCY 332
Cdd:cd09480     2 CGACGRTVYHAEEVQCDGRSFHKCCFLCMVCRKnldstTVAIHDQEIYC--------KSCY 54
LIM3_Paxillin cd09409
The third LIM domain of paxillin; The third LIM domain of paxillin: Paxillin is an adaptor ...
277-310 2.19e-03

The third LIM domain of paxillin; The third LIM domain of paxillin: Paxillin is an adaptor protein, which recruits key components of the signal-transduction machinery to specific sub-cellular locations to respond to environmental changes rapidly. The C-terminal region of paxillin contains four LIM domains which target paxillin to focal adhesions, presumably through a direct association with the cytoplasmic tail of beta-integrin. The N-terminal of paxillin is leucine-rich LD-motifs. Paxillin is found at the interface between the plasma membrane and the actin cytoskeleton. The binding partners of paxillin are diverse and include protein tyrosine kinases, such as Src and FAK, structural proteins, such as vinculin and actopaxin, and regulators of actin organization. Paxillin recruits these proteins to their function sites to control the dynamic changes in cell adhesion, cytoskeletal reorganization and gene expression. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes.


Pssm-ID: 188793 [Multi-domain]  Cd Length: 53  Bit Score: 36.74  E-value: 2.19e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1063743707 277 CGGCNFAVEHGgSVNILGVLWHPGCFCCRACHKP 310
Cdd:cd09409     1 CGGCARAILEN-YISALNTLWHPECFVCRECFTP 33
PTZ00121 PTZ00121
MAEBL; Provisional
13-262 2.25e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 41.28  E-value: 2.25e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063743707   13 SEDRFEAETIHVIEVSQHEADIQKAKQRSLA--THEAEKLDLAtHEAEQLDLAIQEFSRQEEEEERRRTRELENDAQIAN 90
Cdd:PTZ00121  1518 AEEAKKADEAKKAEEAKKADEAKKAEEKKKAdeLKKAEELKKA-EEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEE 1596
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063743707   91 VLQHEERERLINKKTALEDEEDELLARTL----EESLKENNRRKMFEEQVNKDEQLalivqeslnmeeypiRLEEYKSIS 166
Cdd:PTZ00121  1597 VMKLYEEEKKMKAEEAKKAEEAKIKAEELkkaeEEKKKVEQLKKKEAEEKKKAEEL---------------KKAEEENKI 1661
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063743707  167 RRAPLDVDEQFAKAVKESLKNKGKGKQFEDEQVKKD-------EQLALIVQESLNMVESPPRLEENNNISTRAPVDEDEQ 239
Cdd:PTZ00121  1662 KAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEaeeakkaEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEE 1741
                          250       260
                   ....*....|....*....|....*.
gi 1063743707  240 LAKAVEESLKGKGQ---IKQSKDEVE 262
Cdd:PTZ00121  1742 DKKKAEEAKKDEEEkkkIAHLKKEEE 1767
PTZ00108 PTZ00108
DNA topoisomerase 2-like protein; Provisional
92-277 2.34e-03

DNA topoisomerase 2-like protein; Provisional


Pssm-ID: 240271 [Multi-domain]  Cd Length: 1388  Bit Score: 41.19  E-value: 2.34e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063743707   92 LQHEERERLINKKTALEDEEDELLARTLEESLKE--NNRRKMFEEQVNKDEQLALiVQESLNMEEYPIRLEEYKSISRRA 169
Cdd:PTZ00108  1099 LTKEKVEKLNAELEKKEKELEKLKNTTPKDMWLEdlDKFEEALEEQEEVEEKEIA-KEQRLKSKTKGKASKLRKPKLKKK 1177
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063743707  170 PLDVDEQFAKAVKESLKNKGKGKQFEDEQVKKDEQLAlivqESLNMVESPPRLEENNNISTRAPVDEDEQLAKAVEESLK 249
Cdd:PTZ00108  1178 EKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPD----NKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKS 1253
                          170       180
                   ....*....|....*....|....*...
gi 1063743707  250 GKGQIKQSKDEVEGDGMLLELNPPPSLC 277
Cdd:PTZ00108  1254 SEDNDEFSSDDLSKEGKPKNAPKRVSAV 1281
LIM2_FHL cd09345
The second LIM domain of Four and a half LIM domains protein (FHL); The second LIM domain of ...
277-311 5.74e-03

The second LIM domain of Four and a half LIM domains protein (FHL); The second LIM domain of Four and a half LIM domains protein (FHL): LIM-only protein family consists of five members, designated FHL1, FHL2, FHL3, FHL5 and LIMPETin. The first four members are composed of four complete LIM domains arranged in tandem and an N-terminal single zinc finger domain with a consensus sequence equivalent to the C-terminal half of a LIM domain. LIMPETin is an exception, containing six LIM domains. FHL1, 2 and 3 are predominantly expressed in muscle tissues, and FHL5 is highly expressed in male germ cells. FHL proteins exert their roles as transcription co-activators or co-repressors through a wide array of interaction partners. For example, FHL1 binds to Myosin-binding protein C, regulating myosin filament formation and sarcomere assembly. FHL2 has shown to interact with more than 50 different proteins, including receptors, structural proteins, transcription factors and cofactors, signal transducers, splicing factors, DNA replication and repair enzymes, and metabolic enzymes. FHL3 int eracts with many transcription factors, such as CREB, BKLF/KLF3, CtBP2, MyoD, and MZF_1. FHL5 is a tissue-specific coactivator of CREB/CREM family transcription factors. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes.


Pssm-ID: 188731 [Multi-domain]  Cd Length: 54  Bit Score: 35.35  E-value: 5.74e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1063743707 277 CGGCNFAVEHGGS-VNILGVLWHPGCFCCRACHKPI 311
Cdd:cd09345     1 CKACGKAIMPGSKkMEYKGKFWHEKCFTCSECKKPI 36
LIM2_ENH cd09457
The second LIM domain of the Enigma Homolog (ENH) family; The second LIM domain of the Enigma ...
277-311 6.58e-03

The second LIM domain of the Enigma Homolog (ENH) family; The second LIM domain of the Enigma Homolog (ENH) family: ENH was initially identified in rat brain. Same as enigma, it contains three LIM domains at the C-terminus and a PDZ domain at N-terminus. ENH is implicated in signal transduction processes involving protein kinases. It has also been shown that ENH interacts with protein kinase D1 (PKD1) via its LIM domains and forms a complex with PKD1 and the alpha1C subunit of cardiac L-type voltage-gated calcium channel in rat neonatal cardiomyocytes. The N-terminal PDZ domain interacts with alpha-actinin at the Z-line. ENH is expressed in multiple tissues, such as skeletal muscle, heart, bone, and brain. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes.


Pssm-ID: 188841 [Multi-domain]  Cd Length: 52  Bit Score: 35.39  E-value: 6.58e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1063743707 277 CGGCNFAVeHGGSVNILGVLWHPGCFCCRACHKPI 311
Cdd:cd09457     1 CGRCQRKI-LGEVINALKQTWHVSCFVCVACHNPI 34
LIM2_abLIM cd09328
The second LIM domain on actin binding LIM (abLIM) proteins; The second LIM domain of actin ...
277-315 7.43e-03

The second LIM domain on actin binding LIM (abLIM) proteins; The second LIM domain of actin binding LIM (abLIM) proteins: Three homologous members of the abLIM protein family have been identified; abLIM-1, abLIM-2 and abLIM-3. The N-terminal of abLIM consists of four tandem repeats of LIM domains and the C-terminal of acting binding LIM protein is a villin headpiece domain, which has strong actin binding activity. The abLIM-1, which is expressed in retina, brain, and muscle tissue, has been indicated to function as a tumor suppressor. AbLIM-2 and -3, mainly expressed in muscle and neuronal tissue, bind to F-actin strongly. They may serve as a scaffold for signaling modules of the actin cytoskeleton and thereby modulate transcription. It has shown that LIM domains of abLIMs interact with STARS (striated muscle activator of Rho signaling), which directly binds actin and stimulates serum-response factor (SRF)-dependent transcription. All LIM domains are 50-60 amino acids in size and share two characteristic highly conserved zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes.


Pssm-ID: 188714  Cd Length: 56  Bit Score: 35.01  E-value: 7.43e-03
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1063743707 277 CGGCNFAVEhGGSVNILGVLWHPGCFCCRACHKPIAIHD 315
Cdd:cd09328     4 CDSCQDFVE-GEVVSALGKTYHPKCFVCSVCRQPFPPGD 41
PTZ00121 PTZ00121
MAEBL; Provisional
26-260 8.26e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 39.35  E-value: 8.26e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063743707   26 EVSQHEADIQKAKQRSLATHEAEKLDLATHEAEQLDLAIQEFSRQEEEEERRRTRELENDAQIANVLQHEERERLINKKT 105
Cdd:PTZ00121  1461 EAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAK 1540
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063743707  106 ALEDEEDELLARTLEESLKENNRRKMFE-EQVNKDEQLALIVQESLNMEEYPiRLEEYKSISRRAPLDVDEQFAKAvkES 184
Cdd:PTZ00121  1541 KAEEKKKADELKKAEELKKAEEKKKAEEaKKAEEDKNMALRKAEEAKKAEEA-RIEEVMKLYEEEKKMKAEEAKKA--EE 1617
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1063743707  185 LKNKGKGKQFEDEQVKKDEQLALIVQESLNMVESPPRLEENNNIstrapvdEDEQLAKAVEESLKGKGQIKQSKDE 260
Cdd:PTZ00121  1618 AKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKI-------KAAEEAKKAEEDKKKAEEAKKAEED 1686
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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