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Conserved domains on  [gi|1063737086|ref|NP_001330460|]
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receptor like protein 56 [Arabidopsis thaliana]

Protein Classification

leucine-rich repeat domain-containing protein( domain architecture ID 12835115)

leucine-rich repeat (LRR) domain-containing protein may participate in protein-protein interactions

CATH:  3.80.10.10
Gene Ontology:  GO:0005515
PubMed:  11751054|7583641|14747988
SCOP:  4003523

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN00113 super family cl33413
leucine-rich repeat receptor-like protein kinase; Provisional
 197-801 1.96e-61

leucine-rich repeat receptor-like protein kinase; Provisional


The actual alignment was detected with superfamily member PLN00113:

Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 225.50  E-value: 1.96e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 197 LDLRGINFVGQLPLCFGNLNKLRFLDLSSNQLTGNIPPS-FSSLESLEYLSLSDNSFEGFFSLNPLTNLTKLKVfifssK 275
Cdd:PLN00113   74 IDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDiFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDL-----S 148

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 276 DDMVQvkiestwqplfqlsvlvlrlcslEKIPNFLMYQKNLHVVDLSGNRISGIIPTWLlENNPELEVLQLKNNSFTiFQ 355
Cdd:PLN00113  149 NNMLS-----------------------GEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL-TNLTSLEFLTLASNQLV-GQ 203

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 356 MPTSV---HNLQVLDFSENNIGGLFPDNFGRvLPNLVHMNGSNNGFQGNFPSSMGEMYNISFLDLSYNNLSGELPQSfVS 432
Cdd:PLN00113  204 IPRELgqmKSLKWIYLGYNNLSGEIPYEIGG-LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS-IF 281

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 433 SCFSLSILQLSHNKFSGHFLPRQTNFTSLIVLRINNNLFTGKIGVGLLTLVDLCILDMSNNFLEGELPPLLLVFEYLNFL 512
Cdd:PLN00113  282 SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVL 361

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 513 DLSGNLLSGALPSHVSLDNVLF---LHNNNFTGPIPDTF--LGSIQILDLRNNKLSGNIPQ-FVDTQDISFLLLRGNSLT 586
Cdd:PLN00113  362 DLSTNNLTGEIPEGLCSSGNLFkliLFSNSLEGEIPKSLgaCRSLRRVRLQDNSFSGELPSeFTKLPLVYFLDISNNNLQ 441

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 587 GYIPSTLCEFSKMRLLDLSDNKLNGFIPScfnnlSFGLARKEeitnyyvavalesfylgfykstfvvenfRLDYSNyfei 666
Cdd:PLN00113  442 GRINSRKWDMPSLQMLSLARNKFFGGLPD-----SFGSKRLE----------------------------NLDLSR---- 484

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 667 dvkfatkqryDSYIGAFQFSEGTLNSMYGLDLSSNELSGVIPAELGDLFKLRALNLSHNFLSSHIPDSFSKLQDIESLDL 746
Cdd:PLN00113  485 ----------NQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDL 554

                         570       580       590       600       610
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1063737086 747 SYNMLQGSIPHQLTNLTSLAIFNVSYNNLSGIIPQGKQFNTFDENSYLGNPLLCG 801
Cdd:PLN00113  555 SQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCG 609
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
42-267 5.67e-20

Leucine-rich repeat (LRR) protein [Transcription];


:

Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 93.46  E-value: 5.67e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086  42 LSLYTSYYLEISLLNLSLLHPFEEVRSLDLSNSRLNGLVDDVEGYKSLRRLRNLQILNFSSNEFnnsifpfLNAATSLTT 121
Cdd:COG4886    45 LLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGNEE-------LSNLTNLES 117

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 122 LSLRRNNMyGPIPlKELKNLTNLELLDLSGNRIDgSMPvREFPYLKKLKALDLSSNGIySSMEwQVFCEMKNLQELDLRG 201
Cdd:COG4886   118 LDLSGNQL-TDLP-EELANLTNLKELDLSNNQLT-DLP-EPLGNLTNLKSLDLSNNQL-TDLP-EELGNLTNLKELDLSN 191

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1063737086 202 iNFVGQLPLCFGNLNKLRFLDLSSNQLTgNIPPSFSSLESLEYLSLSDNSFEGFFSLNPLTNLTKL 267
Cdd:COG4886   192 -NQITDLPEPLGNLTNLEELDLSGNQLT-DLPEPLANLTNLETLDLSNNQLTDLPELGNLTNLEEL 255
 
Name Accession Description Interval E-value
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 197-801 1.96e-61

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 225.50  E-value: 1.96e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 197 LDLRGINFVGQLPLCFGNLNKLRFLDLSSNQLTGNIPPS-FSSLESLEYLSLSDNSFEGFFSLNPLTNLTKLKVfifssK 275
Cdd:PLN00113   74 IDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDiFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDL-----S 148

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 276 DDMVQvkiestwqplfqlsvlvlrlcslEKIPNFLMYQKNLHVVDLSGNRISGIIPTWLlENNPELEVLQLKNNSFTiFQ 355
Cdd:PLN00113  149 NNMLS-----------------------GEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL-TNLTSLEFLTLASNQLV-GQ 203

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 356 MPTSV---HNLQVLDFSENNIGGLFPDNFGRvLPNLVHMNGSNNGFQGNFPSSMGEMYNISFLDLSYNNLSGELPQSfVS 432
Cdd:PLN00113  204 IPRELgqmKSLKWIYLGYNNLSGEIPYEIGG-LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS-IF 281

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 433 SCFSLSILQLSHNKFSGHFLPRQTNFTSLIVLRINNNLFTGKIGVGLLTLVDLCILDMSNNFLEGELPPLLLVFEYLNFL 512
Cdd:PLN00113  282 SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVL 361

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 513 DLSGNLLSGALPSHVSLDNVLF---LHNNNFTGPIPDTF--LGSIQILDLRNNKLSGNIPQ-FVDTQDISFLLLRGNSLT 586
Cdd:PLN00113  362 DLSTNNLTGEIPEGLCSSGNLFkliLFSNSLEGEIPKSLgaCRSLRRVRLQDNSFSGELPSeFTKLPLVYFLDISNNNLQ 441

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 587 GYIPSTLCEFSKMRLLDLSDNKLNGFIPScfnnlSFGLARKEeitnyyvavalesfylgfykstfvvenfRLDYSNyfei 666
Cdd:PLN00113  442 GRINSRKWDMPSLQMLSLARNKFFGGLPD-----SFGSKRLE----------------------------NLDLSR---- 484

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 667 dvkfatkqryDSYIGAFQFSEGTLNSMYGLDLSSNELSGVIPAELGDLFKLRALNLSHNFLSSHIPDSFSKLQDIESLDL 746
Cdd:PLN00113  485 ----------NQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDL 554

                         570       580       590       600       610
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1063737086 747 SYNMLQGSIPHQLTNLTSLAIFNVSYNNLSGIIPQGKQFNTFDENSYLGNPLLCG 801
Cdd:PLN00113  555 SQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCG 609
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
27-387 9.61e-22

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 98.85  E-value: 9.61e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086  27 WENIKCNRTSRRLTGLSLYTSYYLEISLLNLSLLHPFEEVRSLDLSNSrlnglvddvegyKSLRRLRNLQILNFSSNEFN 106
Cdd:COG4886    59 DLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGN------------EELSNLTNLESLDLSGNQLT 126

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 107 nSIFPFLNAATSLTTLSLRRNNMyGPIPlKELKNLTNLELLDLSGNRIDgSMPvREFPYLKKLKALDLSSNGIySSMEwQ 186
Cdd:COG4886   127 -DLPEELANLTNLKELDLSNNQL-TDLP-EPLGNLTNLKSLDLSNNQLT-DLP-EELGNLTNLKELDLSNNQI-TDLP-E 199

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 187 VFCEMKNLQELDLRGiNFVGQLPLCFGNLNKLRFLDLSSNQLTGniPPSFSSLESLEYLSLSDNSFEGFFSLNPLTNLTK 266
Cdd:COG4886   200 PLGNLTNLEELDLSG-NQLTDLPEPLANLTNLETLDLSNNQLTD--LPELGNLTNLEELDLSNNQLTDLPPLANLTNLKT 276

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 267 LKVFIFSSKDDMVQVKIESTWQPLFQLSVLVLRLCSLEKIPNFLMYQKNLHVVDLSGNRISGIIPTWLLENNPELEVLQL 346
Cdd:COG4886   277 LDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLL 356

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 1063737086 347 KNNSFTIFQMPTSVHNLQVLDFSENNIGGLFPDNFGRVLPN 387
Cdd:COG4886   357 NLLSLLLTLLLTLGLLGLLEATLLTLALLLLTLLLLLLTTT 397
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
42-267 5.67e-20

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 93.46  E-value: 5.67e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086  42 LSLYTSYYLEISLLNLSLLHPFEEVRSLDLSNSRLNGLVDDVEGYKSLRRLRNLQILNFSSNEFnnsifpfLNAATSLTT 121
Cdd:COG4886    45 LLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGNEE-------LSNLTNLES 117

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 122 LSLRRNNMyGPIPlKELKNLTNLELLDLSGNRIDgSMPvREFPYLKKLKALDLSSNGIySSMEwQVFCEMKNLQELDLRG 201
Cdd:COG4886   118 LDLSGNQL-TDLP-EELANLTNLKELDLSNNQLT-DLP-EPLGNLTNLKSLDLSNNQL-TDLP-EELGNLTNLKELDLSN 191

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1063737086 202 iNFVGQLPLCFGNLNKLRFLDLSSNQLTgNIPPSFSSLESLEYLSLSDNSFEGFFSLNPLTNLTKL 267
Cdd:COG4886   192 -NQITDLPEPLGNLTNLEELDLSGNQLT-DLPEPLANLTNLETLDLSNNQLTDLPELGNLTNLEEL 255
LRR_RI cd00116
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ...
 58-228 1.61e-08

Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).


Pssm-ID: 238064 [Multi-domain]  Cd Length: 319  Bit Score: 57.37  E-value: 1.61e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086  58 SLLHPFEEVRSLDLSNSRLNGlvDDVEGY-KSLRRLRNLQILNFSSNEFNN----SIFPFLNAATSLTTLSLRRN--NMY 130
Cdd:cd00116   131 GLKDLPPALEKLVLGRNRLEG--ASCEALaKALRANRDLKELNLANNGIGDagirALAEGLKANCNLEVLDLNNNglTDE 208

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 131 GPIPLKE-LKNLTNLELLDLSGNRIdGSMPVREF-----PYLKKLKALDLSSNGIYSS---MEWQVFCEMKNLQELDLRG 201
Cdd:cd00116   209 GASALAEtLASLKSLEVLNLGDNNL-TDAGAAALasallSPNISLLTLSLSCNDITDDgakDLAEVLAEKESLLELDLRG 287

                         170       180       190
                  ....*....|....*....|....*....|....
gi 1063737086 202 INF-------VGQLPLCFGnlNKLRFLDLSSNQL 228
Cdd:cd00116   288 NKFgeegaqlLAESLLEPG--NELESLWVKDDSF 319
PLN03150 PLN03150
hypothetical protein; Provisional
 66-159 4.80e-08

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 56.75  E-value: 4.80e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086  66 VRSLDLSNSRLNGLVDDvegykSLRRLRNLQILNFSSNEFNNSIFPFLNAATSLTTLSLRRNNMYGPIPlKELKNLTNLE 145
Cdd:PLN03150  420 IDGLGLDNQGLRGFIPN-----DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP-ESLGQLTSLR 493

                          90
                  ....*....|....
gi 1063737086 146 LLDLSGNRIDGSMP 159
Cdd:PLN03150  494 ILNLNGNSLSGRVP 507
LRR_RI cd00116
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ...
 147-428 2.53e-07

Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).


Pssm-ID: 238064 [Multi-domain]  Cd Length: 319  Bit Score: 53.51  E-value: 2.53e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 147 LDLSGNRIDGSMPVREFPYLKKLKALDLSSNGIySSMEWQVFCEM----KNLQELDLRGIN------FVGQLPLCFGNLN 216
Cdd:cd00116     3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTL-GEEAAKALASAlrpqPSLKELCLSLNEtgriprGLQSLLQGLTKGC 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 217 KLRFLDLSSNQLTGNIPPSFSSL---ESLEYLSLSDNSFEgffslnpltnltklkvfifsskDDMVQVKIESTWQPLFQL 293
Cdd:cd00116    82 GLQELDLSDNALGPDGCGVLESLlrsSSLQELKLNNNGLG----------------------DRGLRLLAKGLKDLPPAL 139

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 294 SVLVLRLCSL-----EKIPNFLMYQKNLHVVDLSGNRI--SGIIPTWL-LENNPELEVLQLKNNSFT------IFQMPTS 359
Cdd:cd00116   140 EKLVLGRNRLegascEALAKALRANRDLKELNLANNGIgdAGIRALAEgLKANCNLEVLDLNNNGLTdegasaLAETLAS 219

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1063737086 360 VHNLQVLDFSENNIGGL----FPDNFGRVLPNLVHMNGSNN-----GFQgNFPSSMGEMYNISFLDLSYNNLSGELPQ 428
Cdd:cd00116   220 LKSLEVLNLGDNNLTDAgaaaLASALLSPNISLLTLSLSCNditddGAK-DLAEVLAEKESLLELDLRGNKFGEEGAQ 296
LRR_8 pfam13855
Leucine rich repeat;
716-775 1.41e-06

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 45.98  E-value: 1.41e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 716 KLRALNLSHNFLSSHIPDSFSKLQDIESLDLSYNMLQGSIPHQLTNLTSLAIFNVSYNNL 775
Cdd:pfam13855   2 NLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
LRR_8 pfam13855
Leucine rich repeat;
142-201 3.41e-04

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 39.43  E-value: 3.41e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 142 TNLELLDLSGNRIDgSMPVREFPYLKKLKALDLSSNGIySSMEWQVFCEMKNLQELDLRG 201
Cdd:pfam13855   1 PNLRSLDLSNNRLT-SLDDGAFKGLSNLKVLDLSNNLL-TTLSPGAFSGLPSLRYLDLSG 58
 
Name Accession Description Interval E-value
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 197-801 1.96e-61

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 225.50  E-value: 1.96e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 197 LDLRGINFVGQLPLCFGNLNKLRFLDLSSNQLTGNIPPS-FSSLESLEYLSLSDNSFEGFFSLNPLTNLTKLKVfifssK 275
Cdd:PLN00113   74 IDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDiFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDL-----S 148

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 276 DDMVQvkiestwqplfqlsvlvlrlcslEKIPNFLMYQKNLHVVDLSGNRISGIIPTWLlENNPELEVLQLKNNSFTiFQ 355
Cdd:PLN00113  149 NNMLS-----------------------GEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL-TNLTSLEFLTLASNQLV-GQ 203

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 356 MPTSV---HNLQVLDFSENNIGGLFPDNFGRvLPNLVHMNGSNNGFQGNFPSSMGEMYNISFLDLSYNNLSGELPQSfVS 432
Cdd:PLN00113  204 IPRELgqmKSLKWIYLGYNNLSGEIPYEIGG-LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS-IF 281

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 433 SCFSLSILQLSHNKFSGHFLPRQTNFTSLIVLRINNNLFTGKIGVGLLTLVDLCILDMSNNFLEGELPPLLLVFEYLNFL 512
Cdd:PLN00113  282 SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVL 361

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 513 DLSGNLLSGALPSHVSLDNVLF---LHNNNFTGPIPDTF--LGSIQILDLRNNKLSGNIPQ-FVDTQDISFLLLRGNSLT 586
Cdd:PLN00113  362 DLSTNNLTGEIPEGLCSSGNLFkliLFSNSLEGEIPKSLgaCRSLRRVRLQDNSFSGELPSeFTKLPLVYFLDISNNNLQ 441

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 587 GYIPSTLCEFSKMRLLDLSDNKLNGFIPScfnnlSFGLARKEeitnyyvavalesfylgfykstfvvenfRLDYSNyfei 666
Cdd:PLN00113  442 GRINSRKWDMPSLQMLSLARNKFFGGLPD-----SFGSKRLE----------------------------NLDLSR---- 484

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 667 dvkfatkqryDSYIGAFQFSEGTLNSMYGLDLSSNELSGVIPAELGDLFKLRALNLSHNFLSSHIPDSFSKLQDIESLDL 746
Cdd:PLN00113  485 ----------NQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDL 554

                         570       580       590       600       610
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1063737086 747 SYNMLQGSIPHQLTNLTSLAIFNVSYNNLSGIIPQGKQFNTFDENSYLGNPLLCG 801
Cdd:PLN00113  555 SQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCG 609
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
27-387 9.61e-22

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 98.85  E-value: 9.61e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086  27 WENIKCNRTSRRLTGLSLYTSYYLEISLLNLSLLHPFEEVRSLDLSNSrlnglvddvegyKSLRRLRNLQILNFSSNEFN 106
Cdd:COG4886    59 DLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGN------------EELSNLTNLESLDLSGNQLT 126

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 107 nSIFPFLNAATSLTTLSLRRNNMyGPIPlKELKNLTNLELLDLSGNRIDgSMPvREFPYLKKLKALDLSSNGIySSMEwQ 186
Cdd:COG4886   127 -DLPEELANLTNLKELDLSNNQL-TDLP-EPLGNLTNLKSLDLSNNQLT-DLP-EELGNLTNLKELDLSNNQI-TDLP-E 199

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 187 VFCEMKNLQELDLRGiNFVGQLPLCFGNLNKLRFLDLSSNQLTGniPPSFSSLESLEYLSLSDNSFEGFFSLNPLTNLTK 266
Cdd:COG4886   200 PLGNLTNLEELDLSG-NQLTDLPEPLANLTNLETLDLSNNQLTD--LPELGNLTNLEELDLSNNQLTDLPPLANLTNLKT 276

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 267 LKVFIFSSKDDMVQVKIESTWQPLFQLSVLVLRLCSLEKIPNFLMYQKNLHVVDLSGNRISGIIPTWLLENNPELEVLQL 346
Cdd:COG4886   277 LDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLL 356

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 1063737086 347 KNNSFTIFQMPTSVHNLQVLDFSENNIGGLFPDNFGRVLPN 387
Cdd:COG4886   357 NLLSLLLTLLLTLGLLGLLEATLLTLALLLLTLLLLLLTTT 397
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
42-267 5.67e-20

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 93.46  E-value: 5.67e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086  42 LSLYTSYYLEISLLNLSLLHPFEEVRSLDLSNSRLNGLVDDVEGYKSLRRLRNLQILNFSSNEFnnsifpfLNAATSLTT 121
Cdd:COG4886    45 LLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGNEE-------LSNLTNLES 117

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 122 LSLRRNNMyGPIPlKELKNLTNLELLDLSGNRIDgSMPvREFPYLKKLKALDLSSNGIySSMEwQVFCEMKNLQELDLRG 201
Cdd:COG4886   118 LDLSGNQL-TDLP-EELANLTNLKELDLSNNQLT-DLP-EPLGNLTNLKSLDLSNNQL-TDLP-EELGNLTNLKELDLSN 191

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1063737086 202 iNFVGQLPLCFGNLNKLRFLDLSSNQLTgNIPPSFSSLESLEYLSLSDNSFEGFFSLNPLTNLTKL 267
Cdd:COG4886   192 -NQITDLPEPLGNLTNLEELDLSGNQLT-DLPEPLANLTNLETLDLSNNQLTDLPELGNLTNLEEL 255
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
92-468 3.01e-19

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 91.15  E-value: 3.01e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086  92 LRNLQILNFSSNEFNNSIFPFLNAATSLTTLSLRRNNMYGPIPLKELKNLTNLELLDLSGNRIDGSMPVREFPYLKKLKA 171
Cdd:COG4886    21 LTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTE 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 172 LDLSSNgiyssmewQVFCEMKNLQELDLRGiNFVGQLPLCFGNLNKLRFLDLSSNQLTgNIPPSFSSLESLEYLSLSDNS 251
Cdd:COG4886   101 LDLSGN--------EELSNLTNLESLDLSG-NQLTDLPEELANLTNLKELDLSNNQLT-DLPEPLGNLTNLKSLDLSNNQ 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 252 FEGFFSlnPLTNLTKLKVFIFSSKddmvQVK-IESTWQPLFQLSVLVLRLCSLEKIPNFLMYQKNLHVVDLSGNRISGII 330
Cdd:COG4886   171 LTDLPE--ELGNLTNLKELDLSNN----QITdLPEPLGNLTNLEELDLSGNQLTDLPEPLANLTNLETLDLSNNQLTDLP 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 331 PtwlLENNPELEVLQLKNNSFTIFQMPTSVHNLQVLDFSENNIGGLFPDNFGRVLPNLVHMNGSNNGFQGNFPSSMGEMY 410
Cdd:COG4886   245 E---LGNLTNLEELDLSNNQLTDLPPLANLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLT 321

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1063737086 411 NISFLDLSYNNLSGELPQSFVSSCFSLSILQLSHNKFSGHFLPRQTNFTSLIVLRINN 468
Cdd:COG4886   322 TLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLLTLLLTLGLLGLLEATL 379
PLN03150 PLN03150
hypothetical protein; Provisional
 695-808 6.11e-19

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 91.80  E-value: 6.11e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 695 GLDLSSNELSGVIPAELGDLFKLRALNLSHNFLSSHIPDSFSKLQDIESLDLSYNMLQGSIPHQLTNLTSLAIFNVSYNN 774
Cdd:PLN03150  422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS 501

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1063737086 775 LSGIIP--------QGKQFNTFDensylgNPLLCGPPTDTSC 808
Cdd:PLN03150  502 LSGRVPaalggrllHRASFNFTD------NAGLCGIPGLRAC 537
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
24-435 2.99e-18

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 88.07  E-value: 2.99e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086  24 CCQWENIKCNRTSRRLTGLSLYTSYYLEISLLNLSLLHPFEEVRSLDLSNSRLNGLVDDVEGYKSLRRLRNLQILNFSSN 103
Cdd:COG4886     1 LLLLLLSLTLKLLLLLLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 104 EFNNSIFPF--LNAATSLTTLSLRRNNmygpiPLKELKNLTNlelLDLSGNRIDgSMPVrEFPYLKKLKALDLSSNGIYS 181
Cdd:COG4886    81 LLSLLLLGLtdLGDLTNLTELDLSGNE-----ELSNLTNLES---LDLSGNQLT-DLPE-ELANLTNLKELDLSNNQLTD 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 182 SMEwqVFCEMKNLQELDLRGiNFVGQLPLCFGNLNKLRFLDLSSNQLTgNIPPSFSSLESLEYLSLSDNSFEGFFSlnPL 261
Cdd:COG4886   151 LPE--PLGNLTNLKSLDLSN-NQLTDLPEELGNLTNLKELDLSNNQIT-DLPEPLGNLTNLEELDLSGNQLTDLPE--PL 224

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 262 TNLTKLKvfifsskddmvqvkiestwqplfqlsVLVLRLCSLEKIPNfLMYQKNLHVVDLSGNRISGIIPtwlLENNPEL 341
Cdd:COG4886   225 ANLTNLE--------------------------TLDLSNNQLTDLPE-LGNLTNLEELDLSNNQLTDLPP---LANLTNL 274

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 342 EVLQLKNNSFTIFQMPTSVHNLQVLDFSENNIGGLFPDNFGRVLPNLVHMNGSNNGFQGNFPSSMGEMYNISFLDLSYNN 421
Cdd:COG4886   275 KTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLL 354

                         410
                  ....*....|....
gi 1063737086 422 LSGELPQSFVSSCF 435
Cdd:COG4886   355 LLNLLSLLLTLLLT 368
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 575-780 2.73e-16

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 83.74  E-value: 2.73e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 575 ISFLLLRGNSLTGYIPSTLCEFSKMRLLDLSDNKLNGFIPSCFNNLSFGLARkeeitnyyvavalesfylgfykstfvve 654
Cdd:PLN00113   71 VVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRY---------------------------- 122

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 655 nfrLDYSNyfeidvkfatkqryDSYIGAFqfSEGTLNSMYGLDLSSNELSGVIPAELGDLFKLRALNLSHNFLSSHIPDS 734
Cdd:PLN00113  123 ---LNLSN--------------NNFTGSI--PRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS 183

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1063737086 735 FSKLQDIESLDLSYNMLQGSIPHQLTNLTSLAIFNVSYNNLSGIIP 780
Cdd:PLN00113  184 LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIP 229
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
696-778 5.60e-10

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 62.26  E-value: 5.60e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 696 LDLSSNELSGvIPAELGDLFKLRALNLSHNFLSShIPDSFSKLQDIESLDLSYNMLQgSIPHQLTNLTSLAIFNVSYNNL 775
Cdd:COG4886   164 LDLSNNQLTD-LPEELGNLTNLKELDLSNNQITD-LPEPLGNLTNLEELDLSGNQLT-DLPEPLANLTNLETLDLSNNQL 240


                  ...
gi 1063737086 776 SGI 778
Cdd:COG4886   241 TDL 243
PLN03150 PLN03150
hypothetical protein; Provisional
 690-778 6.97e-10

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 62.53  E-value: 6.97e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 690 LNSMYGLDLSSNELSGVIPAELGDLFKLRALNLSHNFLSSHIPDSFSKLQDIESLDLSYNMLQGSIPHQL-TNLTSLAIF 768
Cdd:PLN03150  441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALgGRLLHRASF 520

                          90
                  ....*....|.
gi 1063737086 769 NVSYN-NLSGI 778
Cdd:PLN03150  521 NFTDNaGLCGI 531
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
456-778 2.51e-09

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 60.33  E-value: 2.51e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 456 TNFTSLIVLRINNNLFTGKIGVGLLTLVDLCILDMSNNFLEGELPPLLLVFEYLNFLDLSGNLLSGALPSHVSLDNVLFL 535
Cdd:COG4886    19 ELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNL 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 536 HNNNFTGPIPDTFLGSIQILDLRNNKLSGNIPQFVDTQDISFLLLRGNSLTgYIPSTLCEFSKMRLLDLSDNKLNGfIPS 615
Cdd:COG4886    99 TELDLSGNEELSNLTNLESLDLSGNQLTDLPEELANLTNLKELDLSNNQLT-DLPEPLGNLTNLKSLDLSNNQLTD-LPE 176

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 616 CFNNLSfglarkeeitnyyvavALESfylgfykstfvvenfrldysnyfeidvkfatkqrydsyigafqfsegtlnsmyg 695
Cdd:COG4886   177 ELGNLT----------------NLKE------------------------------------------------------ 186

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 696 LDLSSNELSgVIPAELGDLFKLRALNLSHNFLSShIPDSFSKLQDIESLDLSYNMLQgSIPhQLTNLTSLAIFNVSYNNL 775
Cdd:COG4886   187 LDLSNNQIT-DLPEPLGNLTNLEELDLSGNQLTD-LPEPLANLTNLETLDLSNNQLT-DLP-ELGNLTNLEELDLSNNQL 262


                  ...
gi 1063737086 776 SGI 778
Cdd:COG4886   263 TDL 265
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
244-680 4.39e-09

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 59.56  E-value: 4.39e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 244 YLSLSDNSFEGFFSLNPLTNLTKLKVFIFSSKDDMVQVKIESTWQPLFQLSVLVLRLCSLEKIPNFLMYQKNLHVVDLSG 323
Cdd:COG4886     1 LLLLLLSLTLKLLLLLLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 324 NRISGIIPTWLLENNPELEVLQLKNNSFTifqmpTSVHNLQVLDFSENNIGGLfPDNFGRvLPNLVHMNGSNNGFQgNFP 403
Cdd:COG4886    81 LLSLLLLGLTDLGDLTNLTELDLSGNEEL-----SNLTNLESLDLSGNQLTDL-PEELAN-LTNLKELDLSNNQLT-DLP 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 404 SSMGEMYNISFLDLSYNNLSgELPQSFvSSCFSLSILQLSHNKFSghFLPRQ-TNFTSLIVLRINNNLftgkigvglLTL 482
Cdd:COG4886   153 EPLGNLTNLKSLDLSNNQLT-DLPEEL-GNLTNLKELDLSNNQIT--DLPEPlGNLTNLEELDLSGNQ---------LTD 219

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 483 VDLCILDMSNnflegelpplllvfeyLNFLDLSGNLLSgALPSHVSLDN--VLFLHNNNFTGPIPDTFLGSIQILDLRNN 560
Cdd:COG4886   220 LPEPLANLTN----------------LETLDLSNNQLT-DLPELGNLTNleELDLSNNQLTDLPPLANLTNLKTLDLSNN 282

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 561 KLSGNIPQFVDTQDISFLLLRGNSLTGYIPSTLCEFSKMRLLDLSDNKLNGFIPSCFNNLSFGLARKEEITNYYVAVALE 640
Cdd:COG4886   283 QLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLL 362

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|
gi 1063737086 641 SFYLGFYKSTFVVENFRLDYSNYFEIDVKFATKQRYDSYI 680
Cdd:COG4886   363 LTLLLTLGLLGLLEATLLTLALLLLTLLLLLLTTTAGVLL 402
PLN03150 PLN03150
hypothetical protein; Provisional
 191-254 1.55e-08

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 58.29  E-value: 1.55e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1063737086 191 MKNLQELDLRGINFVGQLPLCFGNLNKLRFLDLSSNQLTGNIPPSFSSLESLEYLSLSDNSFEG 254
Cdd:PLN03150  441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSG 504
LRR_RI cd00116
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ...
 58-228 1.61e-08

Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).


Pssm-ID: 238064 [Multi-domain]  Cd Length: 319  Bit Score: 57.37  E-value: 1.61e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086  58 SLLHPFEEVRSLDLSNSRLNGlvDDVEGY-KSLRRLRNLQILNFSSNEFNN----SIFPFLNAATSLTTLSLRRN--NMY 130
Cdd:cd00116   131 GLKDLPPALEKLVLGRNRLEG--ASCEALaKALRANRDLKELNLANNGIGDagirALAEGLKANCNLEVLDLNNNglTDE 208

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 131 GPIPLKE-LKNLTNLELLDLSGNRIdGSMPVREF-----PYLKKLKALDLSSNGIYSS---MEWQVFCEMKNLQELDLRG 201
Cdd:cd00116   209 GASALAEtLASLKSLEVLNLGDNNL-TDAGAAALasallSPNISLLTLSLSCNDITDDgakDLAEVLAEKESLLELDLRG 287

                         170       180       190
                  ....*....|....*....|....*....|....
gi 1063737086 202 INF-------VGQLPLCFGnlNKLRFLDLSSNQL 228
Cdd:cd00116   288 NKFgeegaqlLAESLLEPG--NELESLWVKDDSF 319
PLN03150 PLN03150
hypothetical protein; Provisional
 371-449 3.29e-08

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 57.13  E-value: 3.29e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 371 NNIG--GLFPDNFGRvLPNLVHMNGSNNGFQGNFPSSMGEMYNISFLDLSYNNLSGELPQSfVSSCFSLSILQLSHNKFS 448
Cdd:PLN03150  426 DNQGlrGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNLNGNSLS 503


                  .
gi 1063737086 449 G 449
Cdd:PLN03150  504 G 504
PLN03150 PLN03150
hypothetical protein; Provisional
 66-159 4.80e-08

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 56.75  E-value: 4.80e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086  66 VRSLDLSNSRLNGLVDDvegykSLRRLRNLQILNFSSNEFNNSIFPFLNAATSLTTLSLRRNNMYGPIPlKELKNLTNLE 145
Cdd:PLN03150  420 IDGLGLDNQGLRGFIPN-----DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP-ESLGQLTSLR 493

                          90
                  ....*....|....
gi 1063737086 146 LLDLSGNRIDGSMP 159
Cdd:PLN03150  494 ILNLNGNSLSGRVP 507
PLN03150 PLN03150
hypothetical protein; Provisional
 681-734 6.21e-08

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 56.36  E-value: 6.21e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1063737086 681 GAFQFSEGTLNSMYGLDLSSNELSGVIPAELGDLFKLRALNLSHNFLSSHIPDS 734
Cdd:PLN03150  456 GNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAA 509
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
315-735 8.79e-08

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 55.32  E-value: 8.79e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 315 NLHVVDLSGNRISGIIPTWLLENNPELEVLQLKNNSFTIFQMPTSVHNLQVLDFSENNIGGLFPDNFGRVLPNLVHMNGS 394
Cdd:COG4886     1 LLLLLLSLTLKLLLLLLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 395 NNGFQGNFPSSMGEMYNISFLDLSYNNLSGELPQsfvsscfsLSILQLSHNKFSGhfLPRQ-TNFTSLIVLRINNNLFTg 473
Cdd:COG4886    81 LLSLLLLGLTDLGDLTNLTELDLSGNEELSNLTN--------LESLDLSGNQLTD--LPEElANLTNLKELDLSNNQLT- 149

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 474 KIGVGLLTLVDLCILDMSNNFLEGELPPLLLvFEYLNFLDLSGNLLSgALPSHVS-LDN--VLFLHNNNFTgPIPDTF-- 548
Cdd:COG4886   150 DLPEPLGNLTNLKSLDLSNNQLTDLPEELGN-LTNLKELDLSNNQIT-DLPEPLGnLTNleELDLSGNQLT-DLPEPLan 226

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 549 LGSIQILDLRNNKLSgNIPQFVDTQDISFLLLRGNSLTGYipSTLCEFSKMRLLDLSDNKLNGFIPSCFNNLSFGLARKE 628
Cdd:COG4886   227 LTNLETLDLSNNQLT-DLPELGNLTNLEELDLSNNQLTDL--PPLANLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLL 303

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 629 EITNYYVAVALESFYLGFYKSTFVVENFRLDYSNYFEIDVKFATKQRYDSYIGAFQFSEGTLNSMYGLDLSSNELSGVIP 708
Cdd:COG4886   304 LLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLLTLLLTLGLLGLLEATLLTLA 383

                         410       420
                  ....*....|....*....|....*..
gi 1063737086 709 AELGDLFKLRALNLSHNFLSSHIPDSF 735
Cdd:COG4886   384 LLLLTLLLLLLTTTAGVLLLTLALLDA 410
PLN03150 PLN03150
hypothetical protein; Provisional
 197-267 1.61e-07

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 55.21  E-value: 1.61e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1063737086 197 LDLRGINfvGQLPLCFGNLNKLRFLDLSSNQLTGNIPPSFSSLESLEYLSLSDNSFEGFF--SLNPLTNLTKL 267
Cdd:PLN03150  425 LDNQGLR--GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIpeSLGQLTSLRIL 495
LRR_RI cd00116
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ...
 147-428 2.53e-07

Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).


Pssm-ID: 238064 [Multi-domain]  Cd Length: 319  Bit Score: 53.51  E-value: 2.53e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 147 LDLSGNRIDGSMPVREFPYLKKLKALDLSSNGIySSMEWQVFCEM----KNLQELDLRGIN------FVGQLPLCFGNLN 216
Cdd:cd00116     3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTL-GEEAAKALASAlrpqPSLKELCLSLNEtgriprGLQSLLQGLTKGC 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 217 KLRFLDLSSNQLTGNIPPSFSSL---ESLEYLSLSDNSFEgffslnpltnltklkvfifsskDDMVQVKIESTWQPLFQL 293
Cdd:cd00116    82 GLQELDLSDNALGPDGCGVLESLlrsSSLQELKLNNNGLG----------------------DRGLRLLAKGLKDLPPAL 139

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 294 SVLVLRLCSL-----EKIPNFLMYQKNLHVVDLSGNRI--SGIIPTWL-LENNPELEVLQLKNNSFT------IFQMPTS 359
Cdd:cd00116   140 EKLVLGRNRLegascEALAKALRANRDLKELNLANNGIgdAGIRALAEgLKANCNLEVLDLNNNGLTdegasaLAETLAS 219

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1063737086 360 VHNLQVLDFSENNIGGL----FPDNFGRVLPNLVHMNGSNN-----GFQgNFPSSMGEMYNISFLDLSYNNLSGELPQ 428
Cdd:cd00116   220 LKSLEVLNLGDNNLTDAgaaaLASALLSPNISLLTLSLSCNditddGAK-DLAEVLAEKESLLELDLRGNKFGEEGAQ 296
PLN03150 PLN03150
hypothetical protein; Provisional
 361-429 3.54e-07

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 54.05  E-value: 3.54e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1063737086 361 HNLQVLDFSENNIGGLFPDNFGRVlPNLVHMNGSNNGFQGNFPSSMGEMYNISFLDLSYNNLSGELPQS 429
Cdd:PLN03150  442 RHLQSINLSGNSIRGNIPPSLGSI-TSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAA 509
PLN03150 PLN03150
hypothetical protein; Provisional
 533-615 7.40e-07

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 52.90  E-value: 7.40e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 533 LFLHNNNFTGPIPDTF--LGSIQILDLRNNKLSGNIPQFVDT-QDISFLLLRGNSLTGYIPSTLCEFSKMRLLDLSDNKL 609
Cdd:PLN03150  423 LGLDNQGLRGFIPNDIskLRHLQSINLSGNSIRGNIPPSLGSiTSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL 502


                  ....*.
gi 1063737086 610 NGFIPS 615
Cdd:PLN03150  503 SGRVPA 508
LRR_8 pfam13855
Leucine rich repeat;
716-775 1.41e-06

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 45.98  E-value: 1.41e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 716 KLRALNLSHNFLSSHIPDSFSKLQDIESLDLSYNMLQGSIPHQLTNLTSLAIFNVSYNNL 775
Cdd:pfam13855   2 NLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
PLN03150 PLN03150
hypothetical protein; Provisional
 512-593 5.88e-06

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 49.81  E-value: 5.88e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 512 LDLSGNLLSGALPSHVS----LDNvLFLHNNNFTGPIPDTF--LGSIQILDLRNNKLSGNIPQFV-DTQDISFLLLRGNS 584
Cdd:PLN03150  423 LGLDNQGLRGFIPNDISklrhLQS-INLSGNSIRGNIPPSLgsITSLEVLDLSYNSFNGSIPESLgQLTSLRILNLNGNS 501


                  ....*....
gi 1063737086 585 LTGYIPSTL 593
Cdd:PLN03150  502 LSGRVPAAL 510
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 89-250 8.12e-06

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 47.86  E-value: 8.12e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086  89 LRRLRNLQILNFssneFNNSI--FPFLNAATSLTTLSLRRNNMYgpiPLKELKNLTNLELLDLSGNRIdgSMpVREFPYL 166
Cdd:cd21340    20 LSLCKNLKVLYL----YDNKItkIENLEFLTNLTHLYLQNNQIE---KIENLENLVNLKKLYLGGNRI--SV-VEGLENL 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 167 KKLKALDLSSNGIYS--SMEWQVFCEM---KNLQELDLRGINFVGQLPLcfGNLNKLRFLDLSSNQLT--GNIPPSFSSL 239
Cdd:cd21340    90 TNLEELHIENQRLPPgeKLTFDPRSLAalsNSLRVLNISGNNIDSLEPL--APLRNLEQLDASNNQISdlEELLDLLSSW 167

                         170
                  ....*....|.
gi 1063737086 240 ESLEYLSLSDN 250
Cdd:cd21340   168 PSLRELDLTGN 178
RNA1 COG5238
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ...
 66-229 3.35e-05

Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];


Pssm-ID: 444072 [Multi-domain]  Cd Length: 434  Bit Score: 47.09  E-value: 3.35e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086  66 VRSLDLSNsrlNGLVDD--VEGYKSLRRLRNLQILNFSSNEFNN----SIFPFLNAATSLTTLSLRRNNMYGP--IPLKE 137
Cdd:COG5238   238 LTTLDLSN---NQIGDEgvIALAEALKNNTTVETLYLSGNQIGAegaiALAKALQGNTTLTSLDLSVNRIGDEgaIALAE 314

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 138 -LKNLTNLELLDLSGNRIDGSMPVREFPYLKK---LKALDLSSNGIY-SSMEwqVFCEM----KNLQELDLRG--INFVG 206
Cdd:COG5238   315 gLQGNKTLHTLNLAYNGIGAQGAIALAKALQEnttLHSLDLSDNQIGdEGAI--ALAKYlegnTTLRELNLGKnnIGKQG 392

                         170       180
                  ....*....|....*....|....
gi 1063737086 207 QLPLCFG-NLNKLRFLDLSSNQLT 229
Cdd:COG5238   393 AEALIDAlQTNRLHTLILDGNLIG 416
LRR_8 pfam13855
Leucine rich repeat;
696-751 5.22e-05

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 41.74  E-value: 5.22e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1063737086 696 LDLSSNELSGVIPAELGDLFKLRALNLSHNFLSSHIPDSFSKLQDIESLDLSYNML 751
Cdd:pfam13855   6 LDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
LRR_8 pfam13855
Leucine rich repeat;
193-252 5.87e-05

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 41.74  E-value: 5.87e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 193 NLQELDLRGINFVGQLPLCFGNLNKLRFLDLSSNQLTGNIPPSFSSLESLEYLSLSDNSF 252
Cdd:pfam13855   2 NLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
PLN03150 PLN03150
hypothetical protein; Provisional
 147-235 6.80e-05

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 46.73  E-value: 6.80e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 147 LDLSGNRIDGSMPvREFPYLKKLKALDLSSNGIYSSMEWQvFCEMKNLQELDLRGINFVGQLPLCFGNLNKLRFLDLSSN 226
Cdd:PLN03150  423 LGLDNQGLRGFIP-NDISKLRHLQSINLSGNSIRGNIPPS-LGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500


                  ....*....
gi 1063737086 227 QLTGNIPPS 235
Cdd:PLN03150  501 SLSGRVPAA 509
PLN03150 PLN03150
hypothetical protein; Provisional
 552-621 1.35e-04

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 45.58  E-value: 1.35e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1063737086 552 IQILDLRNNKLSG----NIPQFVDTQDISfllLRGNSLTGYIPSTLCEFSKMRLLDLSDNKLNGFIPSCFNNLS 621
Cdd:PLN03150  420 IDGLGLDNQGLRGfipnDISKLRHLQSIN---LSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT 490
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 716-801 1.95e-04

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 45.22  E-value: 1.95e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 716 KLRALNLSHNFLSSHIPDSFSKLQDIESLDLSYNMLQGSIPHQLTNLT-SLAIFNVSYNNLSGIIPQGKQFN--TFDens 792
Cdd:PLN00113   70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSsSLRYLNLSNNNFTGSIPRGSIPNleTLD--- 146


                  ....*....
gi 1063737086 793 yLGNPLLCG 801
Cdd:PLN00113  147 -LSNNMLSG 154
PLN03150 PLN03150
hypothetical protein; Provisional
 395-527 2.65e-04

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 44.81  E-value: 2.65e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 395 NNGFQGNFPSSMGEMYNISFLDLSYNNLSGELPQSFvSSCFSLSILQLSHNKFSGHfLPRQtnftslivlrinnnlftgk 474
Cdd:PLN03150  427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL-GSITSLEVLDLSYNSFNGS-IPES------------------- 485

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1063737086 475 igVGLLTLvdlcildmsnnflegelpplllvfeyLNFLDLSGNLLSGALPSHV 527
Cdd:PLN03150  486 --LGQLTS--------------------------LRILNLNGNSLSGRVPAAL 510
LRR_8 pfam13855
Leucine rich repeat;
142-201 3.41e-04

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 39.43  E-value: 3.41e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 142 TNLELLDLSGNRIDgSMPVREFPYLKKLKALDLSSNGIySSMEWQVFCEMKNLQELDLRG 201
Cdd:pfam13855   1 PNLRSLDLSNNRLT-SLDDGAFKGLSNLKVLDLSNNLL-TTLSPGAFSGLPSLRYLDLSG 58
PLN03150 PLN03150
hypothetical protein; Provisional
 306-407 5.49e-04

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 43.65  E-value: 5.49e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 306 IPNFLMYQKNLHVVDLSGNRISGIIPTWLlennpelevlqlknnsftifqmpTSVHNLQVLDFSENNIGGLFPDNFGRvL 385
Cdd:PLN03150  434 IPNDISKLRHLQSINLSGNSIRGNIPPSL-----------------------GSITSLEVLDLSYNSFNGSIPESLGQ-L 489

                          90       100
                  ....*....|....*....|..
gi 1063737086 386 PNLVHMNGSNNGFQGNFPSSMG 407
Cdd:PLN03150  490 TSLRILNLNGNSLSGRVPAALG 511
RNA1 COG5238
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ...
 37-276 9.57e-04

Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];


Pssm-ID: 444072 [Multi-domain]  Cd Length: 434  Bit Score: 42.47  E-value: 9.57e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086  37 RRLTGLSLYTSYYLEISLLNLSLLHPFEE-----VRSLDLSNSRLnGLVDDVEGYKSLRRLRNLQILNFSSNEFNNSIFP 111
Cdd:COG5238   148 KDPLGGNAVHLLGLAARLGLLAAISMAKAlqnnsVETVYLGCNQI-GDEGIEELAEALTQNTTVTTLWLKRNPIGDEGAE 226

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 112 FLNAA----TSLTTLSLRRNNM--YGPIPLKE-LKNLTNLELLDLSGNRIDGSMPVREFPYLKK---LKALDLSSNGIyS 181
Cdd:COG5238   227 ILAEAlkgnKSLTTLDLSNNQIgdEGVIALAEaLKNNTTVETLYLSGNQIGAEGAIALAKALQGnttLTSLDLSVNRI-G 305

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 182 SMEWQVFCEM----KNLQELDL--RGINFVGQLPLcFGNLNKLR---FLDLSSNQLTGN----IPPSFSSLESLEYLSLS 248
Cdd:COG5238   306 DEGAIALAEGlqgnKTLHTLNLayNGIGAQGAIAL-AKALQENTtlhSLDLSDNQIGDEgaiaLAKYLEGNTTLRELNLG 384

                         250       260       270
                  ....*....|....*....|....*....|
gi 1063737086 249 DN--SFEGFFSLNPLTNLTKLKVFIFSSKD 276
Cdd:COG5238   385 KNniGKQGAEALIDALQTNRLHTLILDGNL 414
RNA1 COG5238
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ...
 314-425 1.50e-03

Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];


Pssm-ID: 444072 [Multi-domain]  Cd Length: 434  Bit Score: 42.08  E-value: 1.50e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 314 KNLHVVDLSGNRIS--GIIPTW-LLENNPELEVLQLKNNSFT------IFQMPTSVHNLQVLDFSENNIGGLFPDNFGRV 384
Cdd:COG5238   180 NSVETVYLGCNQIGdeGIEELAeALTQNTTVTTLWLKRNPIGdegaeiLAEALKGNKSLTTLDLSNNQIGDEGVIALAEA 259

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1063737086 385 LPN---LVHMNGSNNGFQGNFPSSMGEMY----NISFLDLSYNNLSGE 425
Cdd:COG5238   260 LKNnttVETLYLSGNQIGAEGAIALAKALqgntTLTSLDLSVNRIGDE 307
LRR_8 pfam13855
Leucine rich repeat;
117-179 1.60e-03

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 37.50  E-value: 1.60e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1063737086 117 TSLTTLSLRRNNMYGpIPLKELKNLTNLELLDLSGNRIDGSMPvREFPYLKKLKALDLSSNGI 179
Cdd:pfam13855   1 PNLRSLDLSNNRLTS-LDDGAFKGLSNLKVLDLSNNLLTTLSP-GAFSGLPSLRYLDLSGNRL 61
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 303-445 2.79e-03

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 40.15  E-value: 2.79e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 303 LEKIPNFLMYqKNLHVVDLSGNRISGIIPtwlLENNPELEVLQLKNNSFTIFQMPTSVHNLQVLDFSENNIG---GL--- 376
Cdd:cd21340    14 ITKIDNLSLC-KNLKVLYLYDNKITKIEN---LEFLTNLTHLYLQNNQIEKIENLENLVNLKKLYLGGNRISvveGLenl 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 377 --------------------F-PDNFGRVLPNLVHMNGSNNGFQgnFPSSMGEMYNISFLDLSYNNLS--GELpQSFVSS 433
Cdd:cd21340    90 tnleelhienqrlppgekltFdPRSLAALSNSLRVLNISGNNID--SLEPLAPLRNLEQLDASNNQISdlEEL-LDLLSS 166

                         170
                  ....*....|..
gi 1063737086 434 CFSLSILQLSHN 445
Cdd:cd21340   167 WPSLRELDLTGN 178
LRR_RI cd00116
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ...
 289-610 5.90e-03

Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).


Pssm-ID: 238064 [Multi-domain]  Cd Length: 319  Bit Score: 39.65  E-value: 5.90e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 289 PLFQLSVLVLRLCSL-----EKIPNFLMYQKNLHVVDLSGNRISGIIPTWL-----LENNPELEVLQLKNNSFTIFQMP- 357
Cdd:cd00116    21 KLLCLQVLRLEGNTLgeeaaKALASALRPQPSLKELCLSLNETGRIPRGLQsllqgLTKGCGLQELDLSDNALGPDGCGv 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 358 ----TSVHNLQVLDFSENNIGGLFPDNFGRVLPNLVHmngsnngfqgnfpssmgemyNISFLDLSYNNLSGElpqsfvsS 433
Cdd:cd00116   101 leslLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPP--------------------ALEKLVLGRNRLEGA-------S 153

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 434 CFSLSILqLSHNkfsghflprqtnfTSLIVLRINNNLFTG----KIGVGLLTLVDLCILDMSNNFlegelpplllvfeyl 509
Cdd:cd00116   154 CEALAKA-LRAN-------------RDLKELNLANNGIGDagirALAEGLKANCNLEVLDLNNNG--------------- 204

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 510 nFLDLSGNLLSGALPShvsldnvlflhnnnftgpipdtfLGSIQILDLRNNKLSGNIPQFVDTQDISF------LLLRGN 583
Cdd:cd00116   205 -LTDEGASALAETLAS-----------------------LKSLEVLNLGDNNLTDAGAAALASALLSPnislltLSLSCN 260

                         330       340       350
                  ....*....|....*....|....*....|.
gi 1063737086 584 SLTGYIPSTLCEF--SKMRL--LDLSDNKLN 610
Cdd:cd00116   261 DITDDGAKDLAEVlaEKESLleLDLRGNKFG 291
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 137-327 5.98e-03

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 39.00  E-value: 5.98e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 137 ELKNLTNLELLDLSGNRIDgSMPvrEFPYLKKLKALDLSSNGIySSMEwqVFCEMKNLQELDLRG--INFVGQLplcfGN 214
Cdd:cd21340    19 NLSLCKNLKVLYLYDNKIT-KIE--NLEFLTNLTHLYLQNNQI-EKIE--NLENLVNLKKLYLGGnrISVVEGL----EN 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737086 215 LNKLRFLDLSSNQLTGNIPPSF------SSLESLEYLSLSDNSFEgffSLNPLTNLTKLKVFIFSSKDdmvqvkiestwq 288
Cdd:cd21340    89 LTNLEELHIENQRLPPGEKLTFdprslaALSNSLRVLNISGNNID---SLEPLAPLRNLEQLDASNNQ------------ 153

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1063737086 289 plfqlsvlvlrLCSLEKIPNFLMYQKNLHVVDLSGNRIS 327
Cdd:cd21340   154 -----------ISDLEELLDLLSSWPSLRELDLTGNPVC 181
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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