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Conserved domains on  [gi|1108846600|ref|NP_001334420|]
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zinc finger and SCAN domain-containing protein 26 isoform a [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SCAN super family cl42860
leucine rich region;
43-151 1.09e-44

leucine rich region;


The actual alignment was detected with superfamily member smart00431:

Pssm-ID: 128708 [Multi-domain]  Cd Length: 113  Bit Score: 152.07  E-value: 1.09e-44
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1108846600   43 KQFRQLRYEESTGPREVLRRLRELCRQWLRPETHSKEQILELLVLEQFLTILPRDLQVQVLEHHPETGEELVGILEDLQL 122
Cdd:smart00431   6 QRFRQFRYQETSGPREALSRLRELCRQWLRPELHTKEQILELLVLEQFLTILPGELQAWVREHHPESGEEAVTLLEDLER 85

                           90       100
                   ....*....|....*....|....*....
gi 1108846600  123 DRGKAGEQKdSAQRSRPTVLVGEPAPRRE 151
Cdd:smart00431  86 ELDEPGQQV-SAHVHGQEVLLEKMVPLGA 113
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
253-463 6.20e-09

FOG: Zn-finger [General function prediction only];


:

Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 57.78  E-value: 6.20e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1108846600 253 SQSSVAADHQEISKDKGHPCQECGKVFQRSSHLIRHQKIHLG-EKPYQCKECGKVFSQNAGLLEHLR--IHTGE--KPYL 327
Cdd:COG5048   244 SPSSLSSSDSSSSASESPRSSLPTASSQSSSPNESDSSSEKGfSLPIKSKQCNISFSRSSPLTRHLRsvNHSGEslKPFS 323

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1108846600 328 CIH--CGKNFRRSSHLNRHQKIHSQDEPRECK--ECGKTFSRALLLTHHQRVHGRSKRHHCNE------CGKAFSLTSDL 397
Cdd:COG5048   324 CPYslCGKLFSRNDALKRHILLHTSISPAKEKllNSSSKFSPLLNNEPPQSLQQYKDLKNDKKsetlsnSCIRNFKRDSN 403

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1108846600 398 IRHHRIHT---GEKPFKCNVCQKAFRLNSHLDQHVRIHNEEKPYkCSECNEAFRQksglFQHQRHHHKS 463
Cdd:COG5048   404 LSLHIITHlsfRPYNCKNPPCSKSFNRHYNLIPHKKIHTNHAPL-LCSILKSFRR----DLDLSNHGKD 467
 
Name Accession Description Interval E-value
SCAN smart00431
leucine rich region;
43-151 1.09e-44

leucine rich region;


Pssm-ID: 128708 [Multi-domain]  Cd Length: 113  Bit Score: 152.07  E-value: 1.09e-44
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1108846600   43 KQFRQLRYEESTGPREVLRRLRELCRQWLRPETHSKEQILELLVLEQFLTILPRDLQVQVLEHHPETGEELVGILEDLQL 122
Cdd:smart00431   6 QRFRQFRYQETSGPREALSRLRELCRQWLRPELHTKEQILELLVLEQFLTILPGELQAWVREHHPESGEEAVTLLEDLER 85

                           90       100
                   ....*....|....*....|....*....
gi 1108846600  123 DRGKAGEQKdSAQRSRPTVLVGEPAPRRE 151
Cdd:smart00431  86 ELDEPGQQV-SAHVHGQEVLLEKMVPLGA 113
SCAN pfam02023
SCAN domain; The SCAN domain (named after SRE-ZBP, CTfin51, AW-1 and Number 18 cDNA) is found ...
 38-126 4.47e-43

SCAN domain; The SCAN domain (named after SRE-ZBP, CTfin51, AW-1 and Number 18 cDNA) is found in several pfam00096 proteins. The domain has been shown to be able to mediate homo- and hetero-oligomerization.


Pssm-ID: 460417 [Multi-domain]  Cd Length: 89  Bit Score: 146.86  E-value: 4.47e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1108846600  38 QEPLCKQFRQLRYEESTGPREVLRRLRELCRQWLRPETHSKEQILELLVLEQFLTILPRDLQVQVLEHHPETGEELVGIL 117
Cdd:pfam02023   1 PEASRQRFRQFCYQEAEGPREALSQLRELCHQWLRPEKHTKEQILELLVLEQFLTILPEEIQSWVREHHPESGEEAVALA 80


                  ....*....
gi 1108846600 118 EDLQLDRGK 126
Cdd:pfam02023  81 EDLLLERGE 89
SCAN cd07936
SCAN oligomerization domain; The SCAN domain (named after SRE-ZBP, CTfin51, AW-1 and Number 18 ...
 43-121 2.31e-34

SCAN oligomerization domain; The SCAN domain (named after SRE-ZBP, CTfin51, AW-1 and Number 18 cDNA) is found in several vertebrate proteins that contain C2H2 zinc finger motifs, many of which may be transcription factors playing roles in cell survival and differentiation. This protein-interaction domain is able to mediate homo- and hetero-oligomerization of SCAN-containing proteins. Some SCAN-containing proteins, including those of lower vertebrates, do not contain zinc finger motifs. It has been noted that the SCAN domain resembles a domain-swapped version of the C-terminal domain of the HIV capsid protein. This domain model features elements common to the three general groups of SCAN domains (SCAN-A1, SCAN-A2, and SCAN-B). The SCAND1 protein is truncated at the C-terminus with respect to this model, the SCAND2 protein appears to have a truncated central helix.


Pssm-ID: 153421  Cd Length: 85  Bit Score: 123.52  E-value: 2.31e-34
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1108846600  43 KQFRQLRYEESTGPREVLRRLRELCRQWLRPETHSKEQILELLVLEQFLTILPRDLQVQVLEHHPETGEELVGILEDLQ 121
Cdd:cd07936     6 QRFRAFQYQEASGPREALQRLRELCRQWLRPEIHTKEQILELLVLEQFLIILPPEVQAWVRERKPESGEEAATLAEDLL 84
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
253-463 6.20e-09

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 57.78  E-value: 6.20e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1108846600 253 SQSSVAADHQEISKDKGHPCQECGKVFQRSSHLIRHQKIHLG-EKPYQCKECGKVFSQNAGLLEHLR--IHTGE--KPYL 327
Cdd:COG5048   244 SPSSLSSSDSSSSASESPRSSLPTASSQSSSPNESDSSSEKGfSLPIKSKQCNISFSRSSPLTRHLRsvNHSGEslKPFS 323

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1108846600 328 CIH--CGKNFRRSSHLNRHQKIHSQDEPRECK--ECGKTFSRALLLTHHQRVHGRSKRHHCNE------CGKAFSLTSDL 397
Cdd:COG5048   324 CPYslCGKLFSRNDALKRHILLHTSISPAKEKllNSSSKFSPLLNNEPPQSLQQYKDLKNDKKsetlsnSCIRNFKRDSN 403

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1108846600 398 IRHHRIHT---GEKPFKCNVCQKAFRLNSHLDQHVRIHNEEKPYkCSECNEAFRQksglFQHQRHHHKS 463
Cdd:COG5048   404 LSLHIITHlsfRPYNCKNPPCSKSFNRHYNLIPHKKIHTNHAPL-LCSILKSFRR----DLDLSNHGKD 467
zf-H2C2_2 pfam13465
Zinc-finger double domain;
284-309 1.26e-04

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 38.89  E-value: 1.26e-04
                          10        20
                  ....*....|....*....|....*.
gi 1108846600 284 HLIRHQKIHLGEKPYQCKECGKVFSQ 309
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSFKS 26
 
Name Accession Description Interval E-value
SCAN smart00431
leucine rich region;
43-151 1.09e-44

leucine rich region;


Pssm-ID: 128708 [Multi-domain]  Cd Length: 113  Bit Score: 152.07  E-value: 1.09e-44
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1108846600   43 KQFRQLRYEESTGPREVLRRLRELCRQWLRPETHSKEQILELLVLEQFLTILPRDLQVQVLEHHPETGEELVGILEDLQL 122
Cdd:smart00431   6 QRFRQFRYQETSGPREALSRLRELCRQWLRPELHTKEQILELLVLEQFLTILPGELQAWVREHHPESGEEAVTLLEDLER 85

                           90       100
                   ....*....|....*....|....*....
gi 1108846600  123 DRGKAGEQKdSAQRSRPTVLVGEPAPRRE 151
Cdd:smart00431  86 ELDEPGQQV-SAHVHGQEVLLEKMVPLGA 113
SCAN pfam02023
SCAN domain; The SCAN domain (named after SRE-ZBP, CTfin51, AW-1 and Number 18 cDNA) is found ...
 38-126 4.47e-43

SCAN domain; The SCAN domain (named after SRE-ZBP, CTfin51, AW-1 and Number 18 cDNA) is found in several pfam00096 proteins. The domain has been shown to be able to mediate homo- and hetero-oligomerization.


Pssm-ID: 460417 [Multi-domain]  Cd Length: 89  Bit Score: 146.86  E-value: 4.47e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1108846600  38 QEPLCKQFRQLRYEESTGPREVLRRLRELCRQWLRPETHSKEQILELLVLEQFLTILPRDLQVQVLEHHPETGEELVGIL 117
Cdd:pfam02023   1 PEASRQRFRQFCYQEAEGPREALSQLRELCHQWLRPEKHTKEQILELLVLEQFLTILPEEIQSWVREHHPESGEEAVALA 80


                  ....*....
gi 1108846600 118 EDLQLDRGK 126
Cdd:pfam02023  81 EDLLLERGE 89
SCAN cd07936
SCAN oligomerization domain; The SCAN domain (named after SRE-ZBP, CTfin51, AW-1 and Number 18 ...
 43-121 2.31e-34

SCAN oligomerization domain; The SCAN domain (named after SRE-ZBP, CTfin51, AW-1 and Number 18 cDNA) is found in several vertebrate proteins that contain C2H2 zinc finger motifs, many of which may be transcription factors playing roles in cell survival and differentiation. This protein-interaction domain is able to mediate homo- and hetero-oligomerization of SCAN-containing proteins. Some SCAN-containing proteins, including those of lower vertebrates, do not contain zinc finger motifs. It has been noted that the SCAN domain resembles a domain-swapped version of the C-terminal domain of the HIV capsid protein. This domain model features elements common to the three general groups of SCAN domains (SCAN-A1, SCAN-A2, and SCAN-B). The SCAND1 protein is truncated at the C-terminus with respect to this model, the SCAND2 protein appears to have a truncated central helix.


Pssm-ID: 153421  Cd Length: 85  Bit Score: 123.52  E-value: 2.31e-34
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1108846600  43 KQFRQLRYEESTGPREVLRRLRELCRQWLRPETHSKEQILELLVLEQFLTILPRDLQVQVLEHHPETGEELVGILEDLQ 121
Cdd:cd07936     6 QRFRAFQYQEASGPREALQRLRELCRQWLRPEIHTKEQILELLVLEQFLIILPPEVQAWVRERKPESGEEAATLAEDLL 84
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
253-463 6.20e-09

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 57.78  E-value: 6.20e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1108846600 253 SQSSVAADHQEISKDKGHPCQECGKVFQRSSHLIRHQKIHLG-EKPYQCKECGKVFSQNAGLLEHLR--IHTGE--KPYL 327
Cdd:COG5048   244 SPSSLSSSDSSSSASESPRSSLPTASSQSSSPNESDSSSEKGfSLPIKSKQCNISFSRSSPLTRHLRsvNHSGEslKPFS 323

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1108846600 328 CIH--CGKNFRRSSHLNRHQKIHSQDEPRECK--ECGKTFSRALLLTHHQRVHGRSKRHHCNE------CGKAFSLTSDL 397
Cdd:COG5048   324 CPYslCGKLFSRNDALKRHILLHTSISPAKEKllNSSSKFSPLLNNEPPQSLQQYKDLKNDKKsetlsnSCIRNFKRDSN 403

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1108846600 398 IRHHRIHT---GEKPFKCNVCQKAFRLNSHLDQHVRIHNEEKPYkCSECNEAFRQksglFQHQRHHHKS 463
Cdd:COG5048   404 LSLHIITHlsfRPYNCKNPPCSKSFNRHYNLIPHKKIHTNHAPL-LCSILKSFRR----DLDLSNHGKD 467
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
262-444 3.39e-05

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 46.23  E-value: 3.39e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1108846600 262 QEISKDKGHPCQECGKVFQRSSHLIRHQKIHLGEKPYQC--KECGKVFSQNAGLLEHLRIHTGEKPYLC----------- 328
Cdd:COG5048    26 SLSNAPRPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCsySGCDKSFSRPLELSRHLRTHHNNPSDLNskslplsnska 105

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1108846600 329 -----IHCGKNFRR----SSHLNRHQKIHSQDEPreckECGKTFSRALLLTHHQRVHGRSK-------RHHCNECGKAFS 392
Cdd:COG5048   106 sssslSSSSSNSNDnnllSSHSLPPSSRDPQLPD----LLSISNLRNNPLPGNNSSSVNTPqsnslhpPLPANSLSKDPS 181

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1108846600 393 LTSDLIRHHRIHTGEKPFKCNVCQKAFRLNSHLDQHVRIHNEEKPYKCSECN 444
Cdd:COG5048   182 SNLSLLISSNVSTSIPSSSENSPLSSSYSIPSSSSDQNLENSSSSLPLTTNS 233
zf-H2C2_2 pfam13465
Zinc-finger double domain;
284-309 1.26e-04

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 38.89  E-value: 1.26e-04
                          10        20
                  ....*....|....*....|....*.
gi 1108846600 284 HLIRHQKIHLGEKPYQCKECGKVFSQ 309
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSFKS 26
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
197-437 4.03e-04

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 42.76  E-value: 4.03e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1108846600 197 PIEAQCEDLSLKKNPAMPKEKTNS-QCLETKERLVQNSGLIEHDRAHTGEMSWESVGSQSSVAAD-HQEISKDKGHPCQE 274
Cdd:COG5048   138 PDLLSISNLRNNPLPGNNSSSVNTpQSNSLHPPLPANSLSKDPSSNLSLLISSNVSTSIPSSSENsPLSSSYSIPSSSSD 217

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1108846600 275 CGKvFQRSSHLIRHQKIHLGEKPYQCkecgkvfSQNAGLLEHLRIHTGEKPYLCIHCGKNFRRSSHLNRHQKIHS-QDEP 353
Cdd:COG5048   218 QNL-ENSSSSLPLTTNSQLSPKSLLS-------QSPSSLSSSDSSSSASESPRSSLPTASSQSSSPNESDSSSEKgFSLP 289

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1108846600 354 RECKECGKTFSRALLLTHHQR--VHGRS--KRHHCNE--CGKAFSLTSDLIRHHRIHTGEKPFKC--NVCQKAFRLNSHL 425
Cdd:COG5048   290 IKSKQCNISFSRSSPLTRHLRsvNHSGEslKPFSCPYslCGKLFSRNDALKRHILLHTSISPAKEklLNSSSKFSPLLNN 369

                         250
                  ....*....|..
gi 1108846600 426 DQHVRIHNEEKP 437
Cdd:COG5048   370 EPPQSLQQYKDL 381
zf-H2C2_2 pfam13465
Zinc-finger double domain;
396-419 4.08e-04

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 37.35  E-value: 4.08e-04
                          10        20
                  ....*....|....*....|....
gi 1108846600 396 DLIRHHRIHTGEKPFKCNVCQKAF 419
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSF 24
SFP1 COG5189
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ...
 406-461 5.89e-04

Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning];


Pssm-ID: 227516 [Multi-domain]  Cd Length: 423  Bit Score: 42.01  E-value: 5.89e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1108846600 406 GEKPFKCNV--CQKAF---------RLNSHLDQ----------HVRIHNEEKPYKCSECNEAFRQKSGLFQHQRHHH 461
Cdd:COG5189   346 DGKPYKCPVegCNKKYknqnglkyhMLHGHQNQklhenpspekMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRKHSH 422
zf-H2C2_2 pfam13465
Zinc-finger double domain;
313-337 1.45e-03

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 35.81  E-value: 1.45e-03
                          10        20
                  ....*....|....*....|....*
gi 1108846600 313 LLEHLRIHTGEKPYLCIHCGKNFRR 337
Cdd:pfam13465   2 LKRHMRTHTGEKPYKCPECGKSFKS 26
zf-H2C2_2 pfam13465
Zinc-finger double domain;
424-449 2.04e-03

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 35.42  E-value: 2.04e-03
                          10        20
                  ....*....|....*....|....*.
gi 1108846600 424 HLDQHVRIHNEEKPYKCSECNEAFRQ 449
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSFKS 26
zf-C2H2 pfam00096
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ...
 270-292 2.55e-03

Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter.


Pssm-ID: 395048 [Multi-domain]  Cd Length: 23  Bit Score: 35.35  E-value: 2.55e-03
                          10        20
                  ....*....|....*....|...
gi 1108846600 270 HPCQECGKVFQRSSHLIRHQKIH 292
Cdd:pfam00096   1 YKCPDCGKSFSRKSNLKRHLRTH 23
zf-C2H2 pfam00096
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ...
 298-320 4.29e-03

Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter.


Pssm-ID: 395048 [Multi-domain]  Cd Length: 23  Bit Score: 34.58  E-value: 4.29e-03
                          10        20
                  ....*....|....*....|...
gi 1108846600 298 YQCKECGKVFSQNAGLLEHLRIH 320
Cdd:pfam00096   1 YKCPDCGKSFSRKSNLKRHLRTH 23
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
408-465 7.24e-03

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 38.52  E-value: 7.24e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1108846600 408 KPFKCNVCQKAFRLNSHLDQHVRIHNEEKPYKCSECNEAFRQKSG--LFQHQRHHHKSKL 465
Cdd:COG5048    32 RPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPleLSRHLRTHHNNPS 91
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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