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Conserved domains on  [gi|1178882563|ref|NP_001337274|]
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C2H2-type domain-containing protein [Caenorhabditis elegans]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
DUF1258 pfam06869
Protein of unknown function (DUF1258); This family represents a conserved region approximately ...
87-336 5.02e-167

Protein of unknown function (DUF1258); This family represents a conserved region approximately 260 residues long within a number of hypothetical proteins of unknown function that seem to be specific to C. elegans. Note that this family contains a number of conserved cysteine and histidine residues.This family corresponds to the Mirage group of putative transposases and family members are relatively close homologs of Transposase_21 (pfam02992) proteins (1).


:

Pssm-ID: 429164  Cd Length: 250  Bit Score: 475.40  E-value: 5.02e-167
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1178882563  87 SANSIWTYNKNNFSTHHFCNKCGKVAQNSKKCKHCGGPVASFVRVGSFTQIVELVETYMDDILELREQLKNDRNLEHNLA 166
Cdd:pfam06869   1 SARSLWNYNKGNFSTHFFCNKCGRSVSSSEKCKMCGGPVAKFVRTGAFSQLVELVDTYLDEILKLRENLKSGRNVEHNLN 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1178882563 167 SPFFSSFRETESPNRLRLSLVVSIDGVRISGNKKKLWPVSYIIFDLPTGLMQKSTNIVLGGIVECSENPTTTLWNALIPF 246
Cdd:pfam06869  81 SPFLKSSWKSESENSLNLSLVASIDGVSISGNTKKLWPVSLILVDLPTAEMQKSTNILLEGIVECSENPSTVLWNALLPM 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1178882563 247 ILSDVESHTGKVRNTSFTCHIRPCSADQPAKRAFFGFMAHQSAESCFFCMSPGTLYKFGDRKRREERPGYETIVDSEQGV 326
Cdd:pfam06869 161 ILSDLESPTGKVGNCKFKARIVTCTADQPAKRSFFGMRAHQSAMSCFFCLSTGTLYKTGGPSRHTTRKGNLTVQDSRQGV 240
                         250
                  ....*....|
gi 1178882563 327 HGFGPIPAKI 336
Cdd:pfam06869 241 NGFGPIPSFV 250
 
Name Accession Description Interval E-value
DUF1258 pfam06869
Protein of unknown function (DUF1258); This family represents a conserved region approximately ...
87-336 5.02e-167

Protein of unknown function (DUF1258); This family represents a conserved region approximately 260 residues long within a number of hypothetical proteins of unknown function that seem to be specific to C. elegans. Note that this family contains a number of conserved cysteine and histidine residues.This family corresponds to the Mirage group of putative transposases and family members are relatively close homologs of Transposase_21 (pfam02992) proteins (1).


Pssm-ID: 429164  Cd Length: 250  Bit Score: 475.40  E-value: 5.02e-167
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1178882563  87 SANSIWTYNKNNFSTHHFCNKCGKVAQNSKKCKHCGGPVASFVRVGSFTQIVELVETYMDDILELREQLKNDRNLEHNLA 166
Cdd:pfam06869   1 SARSLWNYNKGNFSTHFFCNKCGRSVSSSEKCKMCGGPVAKFVRTGAFSQLVELVDTYLDEILKLRENLKSGRNVEHNLN 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1178882563 167 SPFFSSFRETESPNRLRLSLVVSIDGVRISGNKKKLWPVSYIIFDLPTGLMQKSTNIVLGGIVECSENPTTTLWNALIPF 246
Cdd:pfam06869  81 SPFLKSSWKSESENSLNLSLVASIDGVSISGNTKKLWPVSLILVDLPTAEMQKSTNILLEGIVECSENPSTVLWNALLPM 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1178882563 247 ILSDVESHTGKVRNTSFTCHIRPCSADQPAKRAFFGFMAHQSAESCFFCMSPGTLYKFGDRKRREERPGYETIVDSEQGV 326
Cdd:pfam06869 161 ILSDLESPTGKVGNCKFKARIVTCTADQPAKRSFFGMRAHQSAMSCFFCLSTGTLYKTGGPSRHTTRKGNLTVQDSRQGV 240
                         250
                  ....*....|
gi 1178882563 327 HGFGPIPAKI 336
Cdd:pfam06869 241 NGFGPIPSFV 250
 
Name Accession Description Interval E-value
DUF1258 pfam06869
Protein of unknown function (DUF1258); This family represents a conserved region approximately ...
87-336 5.02e-167

Protein of unknown function (DUF1258); This family represents a conserved region approximately 260 residues long within a number of hypothetical proteins of unknown function that seem to be specific to C. elegans. Note that this family contains a number of conserved cysteine and histidine residues.This family corresponds to the Mirage group of putative transposases and family members are relatively close homologs of Transposase_21 (pfam02992) proteins (1).


Pssm-ID: 429164  Cd Length: 250  Bit Score: 475.40  E-value: 5.02e-167
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1178882563  87 SANSIWTYNKNNFSTHHFCNKCGKVAQNSKKCKHCGGPVASFVRVGSFTQIVELVETYMDDILELREQLKNDRNLEHNLA 166
Cdd:pfam06869   1 SARSLWNYNKGNFSTHFFCNKCGRSVSSSEKCKMCGGPVAKFVRTGAFSQLVELVDTYLDEILKLRENLKSGRNVEHNLN 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1178882563 167 SPFFSSFRETESPNRLRLSLVVSIDGVRISGNKKKLWPVSYIIFDLPTGLMQKSTNIVLGGIVECSENPTTTLWNALIPF 246
Cdd:pfam06869  81 SPFLKSSWKSESENSLNLSLVASIDGVSISGNTKKLWPVSLILVDLPTAEMQKSTNILLEGIVECSENPSTVLWNALLPM 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1178882563 247 ILSDVESHTGKVRNTSFTCHIRPCSADQPAKRAFFGFMAHQSAESCFFCMSPGTLYKFGDRKRREERPGYETIVDSEQGV 326
Cdd:pfam06869 161 ILSDLESPTGKVGNCKFKARIVTCTADQPAKRSFFGMRAHQSAMSCFFCLSTGTLYKTGGPSRHTTRKGNLTVQDSRQGV 240
                         250
                  ....*....|
gi 1178882563 327 HGFGPIPAKI 336
Cdd:pfam06869 241 NGFGPIPSFV 250
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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