|
Name |
Accession |
Description |
Interval |
E-value |
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
244-726 |
1.69e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 65.16 E-value: 1.69e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 244 QKMRELTINIKMKEDLIKELIKTGNDAKSVSKQYSLKVTKLEHDAEQAKVELIETQKQLQELENKdlsdvAMKVKLQKEF 323
Cdd:PTZ00121 1246 EEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKK-----AEEAKKADEA 1320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 324 RKKMDAAKLRVQVLQKKQQDSKKLASLS-IQNEKRANELEQSVDHMKYQKIQLQRKLREENEKRKQLDAVIKRDQQKIKE 402
Cdd:PTZ00121 1321 KKKAEEAKKKADAAKKKAEEAKKAAEAAkAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKA 1400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 403 IQLKTGQEEGLKPKAEDLDACNLKRRKGSFGSIDHLQKLDEQKKWLDEEVEKVLNQRQELEELEADLKKREAIVSKKEAl 482
Cdd:PTZ00121 1401 EEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKA- 1479
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 483 lQEKSHLENKKLRSSQEEHVLFQLEEGIEALEAAIEYRNESIQNRQKSLRASFHNLSRGEANVLEKLACLSPVEirtilf 562
Cdd:PTZ00121 1480 -EEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELK------ 1552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 563 ryfnKVVNLREAERKQQLyneEMKMKVLERDNM-VRELESALDHLKLQCDRRLTLQQKEHEQKMQLLLhhfKEQDGEGIM 641
Cdd:PTZ00121 1553 ----KAEELKKAEEKKKA---EEAKKAEEDKNMaLRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAK---KAEEAKIKA 1622
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 642 ETFKtyedKIQQLEKDLYFYKKTSRDHKKKLKELVGEAIRRQLAPSEYQEagdgvlKPEGGGMLSEELKWASRPESMKLS 721
Cdd:PTZ00121 1623 EELK----KAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAK------KAEEDKKKAEEAKKAEEDEKKAAE 1692
|
....*
gi 1227523177 722 GRERE 726
Cdd:PTZ00121 1693 ALKKE 1697
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
283-586 |
2.02e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.14 E-value: 2.02e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 283 KLEHDAEQAKVELIETQKQLQELENKDLSDVAMKVKLQKEFRKKMDAAKLRVQVLQKKQQDSKKLASLSIQNEKRANELE 362
Cdd:TIGR02168 681 ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELE 760
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 363 QSVDHMKYQKIQLQRKLREENEKRKQLDAVIKRDQQKIKEIqlktgqEEGLKPKAEDLDACNLKRRKGSFGSIDHLQKLD 442
Cdd:TIGR02168 761 AEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKAL------REALDELRAELTLLNEEAANLRERLESLERRIA 834
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 443 EQKKWLDEEVEKVLNQRQELEELEADLKKREAIVSKKEALLQEKShlenkKLRSSQEEHV------LFQLEEGIEALEAA 516
Cdd:TIGR02168 835 ATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALL-----NERASLEEALallrseLEELSEELRELESK 909
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1227523177 517 IEYRNESIQNRQKSLRASFHNLSRGE---ANVLEKLACLSPVEIRTILFRYFNKVVNLREAERKQQLYNEEMK 586
Cdd:TIGR02168 910 RSELRRELEELREKLAQLELRLEGLEvriDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIK 982
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
216-527 |
2.27e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.02 E-value: 2.27e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 216 LKIDCLQESQELNLQKLKNSERILTEAKQKMRELTINIKMKEDLIKELIKTGNDAKSVSKQYSLKVTKLEHDAEQAKVEL 295
Cdd:COG1196 232 LKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERR 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 296 IETQKQLQELENKDLSDVAMKVKLQKEfrkkMDAAKLRVQVLQKKQQDSKKLASLSIQNEKRAN-ELEQSVDHMKYQKIQ 374
Cdd:COG1196 312 RELEERLEELEEELAELEEELEELEEE----LEELEEELEEAEEELEEAEAELAEAEEALLEAEaELAEAEEELEELAEE 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 375 LQRKLREENEKRKQLDAVIKRDQQKIKEIQLKTGQEEGLKPKAEDLdacnlkrrkgsfgsidhLQKLDEQKKWLDEEVEK 454
Cdd:COG1196 388 LLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAEL-----------------EEEEEEEEEALEEAAEE 450
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1227523177 455 VLNQRQELEELEADLKKREAIVSKKEALLQEkshLENKKLRSSQEEHVLFQLEEGIEALEAAIEYRNESIQNR 527
Cdd:COG1196 451 EAELEEEEEALLELLAELLEEAALLEAALAE---LLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLR 520
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
152-734 |
6.20e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 56.69 E-value: 6.20e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 152 EEQDKVLHCQFSDNSDDEESEGQEKSGTRCRSRSWIQKPDSVCSLVELSDTQDETQKSDLENEDLKIDCLQESQELNLQK 231
Cdd:PTZ00121 1293 DEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKK 1372
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 232 LKNSERILTEAKQKMREltinIKMKEDLIKELIKTGNDAKSVSKqyslkvtklehdAEQAKVELIETQKQLQELENKD-L 310
Cdd:PTZ00121 1373 KEEAKKKADAAKKKAEE----KKKADEAKKKAEEDKKKADELKK------------AAAAKKKADEAKKKAEEKKKADeA 1436
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 311 SDVAMKVKLQKEFRKKMDAAKlRVQVLQKKQQDSKKLASLSIQNE--KRANELEQSVDHMKyQKIQLQRKLREENEKRKQ 388
Cdd:PTZ00121 1437 KKKAEEAKKADEAKKKAEEAK-KAEEAKKKAEEAKKADEAKKKAEeaKKADEAKKKAEEAK-KKADEAKKAAEAKKKADE 1514
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 389 LdaviKRDQQKIKEIQLKTGQEeglKPKAEDLDACNLKRRKgsfgsiDHLQKLDEQKKwlDEEVEKVLNQRQELEELEAD 468
Cdd:PTZ00121 1515 A----KKAEEAKKADEAKKAEE---AKKADEAKKAEEKKKA------DELKKAEELKK--AEEKKKAEEAKKAEEDKNMA 1579
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 469 LKKREAIVSKKEALLQEKSHLENKKLRSSQEehvlfQLEEGIEALEAAIEYRNEsiqnrqKSLRASFHNLSRGEANvlek 548
Cdd:PTZ00121 1580 LRKAEEAKKAEEARIEEVMKLYEEEKKMKAE-----EAKKAEEAKIKAEELKKA------EEEKKKVEQLKKKEAE---- 1644
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 549 laclspvEIRtilfryfnKVVNLREAERKQQLYNEEMKMKVLERDNMVRELESALDHLKLQCDRrltLQQKEHEQKMQLL 628
Cdd:PTZ00121 1645 -------EKK--------KAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEA---LKKEAEEAKKAEE 1706
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 629 LHHFKEQDGEGIMETFKTYEDKIQQLEKdlyfYKKTSRDHKKKLKEL-VGEAIRRQLA-PSEYQEAGDGVLKPEGGGMLS 706
Cdd:PTZ00121 1707 LKKKEAEEKKKAEELKKAEEENKIKAEE----AKKEAEEDKKKAEEAkKDEEEKKKIAhLKKEEEKKAEEIRKEKEAVIE 1782
|
570 580
....*....|....*....|....*...
gi 1227523177 707 EELKWASRPESMKLSGREREMDSSASSL 734
Cdd:PTZ00121 1783 EELDEEDEKRRMEVDKKIKDIFDNFANI 1810
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
241-535 |
8.27e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.14 E-value: 8.27e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 241 EAKQKMRELTINIKMKEDLIKELIKtgndaksvskqyslKVTKLEHDAEQAKvELIETQKQLQELEnKDLSDVAMKVKLQ 320
Cdd:TIGR02168 176 ETERKLERTRENLDRLEDILNELER--------------QLKSLERQAEKAE-RYKELKAELRELE-LALLVLRLEELRE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 321 KEFRKKMDAAKLRVQVLQKKQQDSKKLASLSiQNEKRANELEQSVDH--------------MKYQKIQLQRKLREENEKR 386
Cdd:TIGR02168 240 ELEELQEELKEAEEELEELTAELQELEEKLE-ELRLEVSELEEEIEElqkelyalaneisrLEQQKQILRERLANLERQL 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 387 KQLDAVIKRDQQKIKEIQLK----TGQEEGLKPKAEDLDACNLKRRKGSFGSIDHLQKLDEQ----KKWLDEEVEKVLNQ 458
Cdd:TIGR02168 319 EELEAQLEELESKLDELAEElaelEEKLEELKEELESLEAELEELEAELEELESRLEELEEQletlRSKVAQLELQIASL 398
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1227523177 459 RQELEELEADLkkrEAIVSKKEALLQEKSHLEnKKLRSSQEEHVLFQLEEGIEALEAAIEyRNESIQNRQKSLRASF 535
Cdd:TIGR02168 399 NNEIERLEARL---ERLEDRRERLQQEIEELL-KKLEEAELKELQAELEELEEELEELQE-ELERLEEALEELREEL 470
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
205-675 |
9.85e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 52.76 E-value: 9.85e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 205 ETQKSDLENEDLKIDCLQESQELNLQKLKNSERILTEAKQKMRELTINIKMKEDlIKELIKTGNDAKSVSKQYSLKVTKL 284
Cdd:PRK03918 234 EELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKE-LKEKAEEYIKLSEFYEEYLDELREI 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 285 EHDAEQAKVELIETQKQLQELENKDlSDVAMKVKLQKEFRKKMDAAKLRVQVLQKKQQDSKKLASLSIQNEKRA-NELEQ 363
Cdd:PRK03918 313 EKRLSRLEEEINGIEERIKELEEKE-ERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTpEKLEK 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 364 SVDHMKYQKIQLQRKLREENEKRKQLDAVIKRDQQKIKEIQLKTGQEEGLKPKAEDLDACNLKRR-KGSFGSID-HLQKL 441
Cdd:PRK03918 392 ELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEyTAELKRIEkELKEI 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 442 DEQKKWLDEE---VEKVLNQRQELEELEADLKKREAIVSKKEALLQEKSHLENKKLRSSQEEhvLFQLEEGIEALEAAIE 518
Cdd:PRK03918 472 EEKERKLRKElreLEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEK--LIKLKGEIKSLKKELE 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 519 yRNESIQNRQKSLRASFHNLSRGEANVLEKL-----ACLSPVEIR-TILFRYFNKVVNLREAERKQQLYNEEMKMKVLER 592
Cdd:PRK03918 550 -KLEELKKKLAELEKKLDELEEELAELLKELeelgfESVEELEERlKELEPFYNEYLELKDAEKELEREEKELKKLEEEL 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 593 DNMVRELESALDHLKLQCDRRLTLQQK----EHEQKMQLLLHhfKEQDGEGIMETFKTYEDKIQQLEKDLYFYKKTSRDH 668
Cdd:PRK03918 629 DKAFEELAETEKRLEELRKELEELEKKyseeEYEELREEYLE--LSRELAGLRAELEELEKRREEIKKTLEKLKEELEER 706
|
....*..
gi 1227523177 669 KKKLKEL 675
Cdd:PRK03918 707 EKAKKEL 713
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
283-640 |
2.62e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.48 E-value: 2.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 283 KLEHdAEQ--AKVELIETQ--KQLQELENKdlSDVAMKVK-LQKEFR-KKMDAAKLRVQVLQKKQQD-SKKLASLSIQNE 355
Cdd:COG1196 180 KLEA-TEEnlERLEDILGEleRQLEPLERQ--AEKAERYReLKEELKeLEAELLLLKLRELEAELEElEAELEELEAELE 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 356 KRANELEQSVDHMKYQKIQLQRKLREENEKRKQLDAVIKRDQQKIKEIQLKTGQEEGLKPKAEDLDacnlkrrkgsfgsi 435
Cdd:COG1196 257 ELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELE-------------- 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 436 dhlQKLDEQKKWLDEEVEKVLNQRQELEELEADLKKREAIVSKKEALLQEKSHLENKKLRS-SQEEHVLFQLEEGIEALE 514
Cdd:COG1196 323 ---EELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEElEELAEELLEALRAAAELA 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 515 AAIEYRNESIQNRQKSLRASFHNLSRGEANVLEKLAclspveirtilfryfnKVVNLREAERKQQLYNEEMKMKVLE-RD 593
Cdd:COG1196 400 AQLEELEEAEEALLERLERLEEELEELEEALAELEE----------------EEEEEEEALEEAAEEEAELEEEEEAlLE 463
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 1227523177 594 NMVRELESALDHLKLQCDRRLTLQQKEHEQKMQLLLHHFKEQDGEGI 640
Cdd:COG1196 464 LLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGV 510
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
281-659 |
1.06e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 49.20 E-value: 1.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 281 VTKLEHDAEQAKVELIETQKQLQELENKDLSDVAMKVKLQKEFRKKMDAAKLRVQVLQKKQ-QDSKKLASLSIQNEKRAN 359
Cdd:pfam02463 164 GSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEyLLYLDYLKLNEERIDLLQ 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 360 ELEQSVDHMKYQKIQLQRKLREENEKRKQLDAVIKRDQQKIKEIQLKTGQEEGLKPKAEDLDacNLKRRKGSFGSIDHLQ 439
Cdd:pfam02463 244 ELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKL--ERRKVDDEEKLKESEK 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 440 KLDEQKKWLDEEVEKVLNQRQELEELEADLKKREAIVSKKEALLQEKSHLENKKLRSSQEEHVLFQLEEGIEALEAAIEY 519
Cdd:pfam02463 322 EKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKS 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 520 RNESIQNRQKSLRASFHNLSRGEANVLEKLACLSPVEIRTILFRYFNKVVNLREAERKQQLYNEEMKMKV--LERDNMVR 597
Cdd:pfam02463 402 EEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEdlLKETQLVK 481
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1227523177 598 ELESALDHLKLQCDRRLTLQQKEHEQKMQLLLHHFKEQDGEGIMETFKTYEDKIQQLEKDLY 659
Cdd:pfam02463 482 LQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKV 543
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
276-548 |
1.42e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.90 E-value: 1.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 276 QYSLKVTKLEHDAEQAKVELIETQKQLQELENKDLSDVAMKVKLQKEFrkkmDAAKLRVQVL-QKKQQDSKKLASLSIQN 354
Cdd:TIGR02168 243 ELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKEL----YALANEISRLeQQKQILRERLANLERQL 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 355 EKRANELEQSvdhmKYQKIQLQRKLREENEKRKQLDAVIKRDQQKIKEiqlKTGQEEGLKPKAEDLDACNLKRRKGSF-- 432
Cdd:TIGR02168 319 EELEAQLEEL----ESKLDELAEELAELEEKLEELKEELESLEAELEE---LEAELEELESRLEELEEQLETLRSKVAql 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 433 ----GSID-HLQKLDEQKKWLDEEVEKvLNQRQELEELEADLKKREAIVSKKEALLQEKSHLENKKLRSSQEEHVLFQLE 507
Cdd:TIGR02168 392 elqiASLNnEIERLEARLERLEDRRER-LQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREEL 470
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 1227523177 508 EGIEALEAAIEYRNESIQNRQKSLRASFHNLS---RGEANVLEK 548
Cdd:TIGR02168 471 EEAEQALDAAERELAQLQARLDSLERLQENLEgfsEGVKALLKN 514
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
372-521 |
1.64e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 48.24 E-value: 1.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 372 KIQLQRKLREENEKRKQLDAVIKRDQQKIKEIQLKTGQEEGLKPKAEDLDACNLKRRKgsfgsIDHLQKLDEQKK-WLDE 450
Cdd:PRK12704 26 KKIAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNE-----LQKLEKRLLQKEeNLDR 100
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1227523177 451 EVEKVLNQRQELEELEADLKKREAIVSKKEALLQEKSHLENKKLRS----SQEE---HVLFQLEEGIEAlEAAIEYRN 521
Cdd:PRK12704 101 KLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERisglTAEEakeILLEKVEEEARH-EAAVLIKE 177
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
230-481 |
4.23e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 4.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 230 QKLKNSERILTEAKQKMRELTINIKMKEDLIKELIKTGNDAKSVSKQYSLKVTKLEHDAEQAKVELIETQKQLQElenkd 309
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE----- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 310 lsdvamkvkLQKEFRKKMDAAKLRVQVLQKKQQDSKKLASLSIQN----EKRANELEQSVDHMKYQKIQLQRKLREENEK 385
Cdd:COG4942 95 ---------LRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDfldaVRRLQYLKYLAPARREQAEELRADLAELAAL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 386 RKQLDAVIKRDQQKIKEIQLKTGQEEGLKPKAEDLdacnlkrrkgsfgsidhLQKLDEQKKWLDEEVEKVLNQRQELEEL 465
Cdd:COG4942 166 RAELEAERAELEALLAELEEERAALEALKAERQKL-----------------LARLEKELAELAAELAELQQEAEELEAL 228
|
250
....*....|....*.
gi 1227523177 466 EADLKKREAIVSKKEA 481
Cdd:COG4942 229 IARLEAEAAAAAERTP 244
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
337-550 |
6.04e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 6.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 337 LQKKQQDSKKLASLSIQNEKRANELEQSVDHMKYQKIQLQRKLREENEKRKQLDAVIKRDQQKIKEIQ------------ 404
Cdd:COG4942 29 LEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRaeleaqkeelae 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 405 -LKTGQEEGLKPKAEdldacNLKRRKGSFGSIDHLQKLDEQKKWLDEEVEKVLNQRQELEELEADL-KKREAIVSKKEAL 482
Cdd:COG4942 109 lLRALYRLGRQPPLA-----LLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELeAERAELEALLAEL 183
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1227523177 483 LQEKSHLENKKlrsSQEEHVLFQLEEGIEALEAAIeyrnESIQNRQKSLRASFHNLSRGEANVLEKLA 550
Cdd:COG4942 184 EEERAALEALK---AERQKLLARLEKELAELAAEL----AELQQEAEELEALIARLEAEAAAAAERTP 244
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
275-403 |
1.04e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 45.92 E-value: 1.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 275 KQYSLKVTKLEHDA----EQAKVElIETQKQLQELENKDLSDvAMKVKLQKEFR-KKMDAAKLRVQVLQKKQQDSKKLAS 349
Cdd:PRK12704 27 KIAEAKIKEAEEEAkrilEEAKKE-AEAIKKEALLEAKEEIH-KLRNEFEKELReRRNELQKLEKRLLQKEENLDRKLEL 104
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 1227523177 350 LsiqnEKRANELEQsvdhmkyQKIQLQRKLREENEKRKQLDAVIKRDQQKIKEI 403
Cdd:PRK12704 105 L----EKREEELEK-------KEKELEQKQQELEKKEEELEELIEEQLQELERI 147
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
453-562 |
1.43e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 45.15 E-value: 1.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 453 EKVLNQRQEL----EELEADLKKREAIVSKKEA-LLQEKSHLENKKLRSSQEEHVLFQLEEGIEALEAAIEYRNESIQNR 527
Cdd:PRK12704 57 EALLEAKEEIhklrNEFEKELRERRNELQKLEKrLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEEL 136
|
90 100 110
....*....|....*....|....*....|....*
gi 1227523177 528 QKSLRAsfhnlsrgeanVLEKLACLSPVEIRTILF 562
Cdd:PRK12704 137 IEEQLQ-----------ELERISGLTAEEAKEILL 160
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
203-750 |
1.88e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 45.35 E-value: 1.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 203 QDETQKSDLENEDLKIDCLQESQELNLQKLKNSERILTEAKQKMRELTINIKMKEDLIKELIKtgndaKSVSKQYSLKVT 282
Cdd:pfam02463 213 YQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENK-----EEEKEKKLQEEE 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 283 KLEHDAEQAKVElietqKQLQELENKDLSDVAMKVKLQKEFRKKMDAAKLRVQVLQKKQQDSKKLASLSIQNEKRANELE 362
Cdd:pfam02463 288 LKLLAKEEEELK-----SELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELE 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 363 QSVDHMKYQKIQLQRKLREENEKRKQLDavikRDQQKIKEIQLKTGQEEGLKPKAEDLDACNLKRRKgsfgsIDHLQKLD 442
Cdd:pfam02463 363 KLQEKLEQLEEELLAKKKLESERLSSAA----KLKEEELELKSEEEKEAQLLLELARQLEDLLKEEK-----KEELEILE 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 443 EQKKWLDEEVEKVLNQRQELEELEADLKKREAIVSKKEALLQEKshlENKKLRSSQEEHVLFQLEEGIEALEAAIEYRNE 522
Cdd:pfam02463 434 EEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKET---QLVKLQEQLELLLSRQKLEERSQKESKARSGLK 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 523 SIQNRQKSLRASFHNLSRGEANVLEKLACLSPVEIRTILFRYFNKVVNLREAERKQQLYneemkmkVLERDNMVRELESA 602
Cdd:pfam02463 511 VLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRA-------LTELPLGARKLRLL 583
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 603 LDHLKLQcdrRLTLQQKEHEQKMQLLLHHFKEQDGEGIMETFKTYEDKIQQLEKDLyfykktSRDHKKKLKELVGEAIRR 682
Cdd:pfam02463 584 IPKLKLP---LKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTK------LKESAKAKESGLRKGVSL 654
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1227523177 683 QLAPSEYQEAGDGVLKPEGGGMLSEELKWASRPESMKLSGREREMDSSASSLRTQPNPQKLWEDIPEL 750
Cdd:pfam02463 655 EEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEEL 722
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
217-432 |
1.91e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.75 E-value: 1.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 217 KIDCLQESQELNLQKLKNSERILTEAKQKMRELTINIKMKEDLIKELIKTGNDAKSVSKQYSLKVTKLEHDAEQAKVELI 296
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 297 ETQKQLQE-----------------LENKDLSDVAMKVKLQKEFrkkmdaAKLRVQVLQKKQQDSKKLASLSIQNEKRAN 359
Cdd:COG4942 101 AQKEELAEllralyrlgrqpplallLSPEDFLDAVRRLQYLKYL------APARREQAEELRADLAELAALRAELEAERA 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 360 ELEQSVDHMKYQKIQLQRKLREENEKRKQLDAVIKRDQQKIKEIQ--------LKTGQEEGLKPKAEDLDACNLKRRKGS 431
Cdd:COG4942 175 ELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQqeaeeleaLIARLEAEAAAAAERTPAAGFAALKGK 254
|
.
gi 1227523177 432 F 432
Cdd:COG4942 255 L 255
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
299-678 |
2.54e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.76 E-value: 2.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 299 QKQLQELENKDLSDVAMKVKLQKEFRKKMDAAKLRVQVLQKKQQDSKKLASLSIQNEKRANELEQSVDHMKYQK------ 372
Cdd:COG4717 52 EKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLqllply 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 373 ---IQLQRKLREENEKRKQLDAVIKRDQQKIKEIQLKTGQEEGLKpkaedlDACNLKRRKGSFGSIDHLQKLDEQKKWLD 449
Cdd:COG4717 132 qelEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQ------EELEELLEQLSLATEEELQDLAEELEELQ 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 450 EEVEKVLNQRQELEELEADLKKREAIVSKKEALLQEKSHLENKK-------------------LRSSQEEHVLFQLEEGI 510
Cdd:COG4717 206 QRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARlllliaaallallglggslLSLILTIAGVLFLVLGL 285
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 511 EALEAAIEYRNESIQNRQKSLRASFHNLSRGEANVLEKLAC---LSPVEIRTILFRYFNKVVNLREAERKQQLYNEEMKM 587
Cdd:COG4717 286 LALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAalgLPPDLSPEELLELLDRIEELQELLREAEELEEELQL 365
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 588 KVL--ERDNMVREL----ESALDHLKLQCDRRLTLQQKEHEQKMQLLLhHFKEQDGEGIMETFKTYEDKIQQLEKDLYFY 661
Cdd:COG4717 366 EELeqEIAALLAEAgvedEEELRAALEQAEEYQELKEELEELEEQLEE-LLGELEELLEALDEEELEEELEELEEELEEL 444
|
410
....*....|....*..
gi 1227523177 662 KKTSRDHKKKLKELVGE 678
Cdd:COG4717 445 EEELEELREELAELEAE 461
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
205-532 |
5.37e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 43.56 E-value: 5.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 205 ETQKSDLENEDLKIDCLQESQELNLQKLKNSERILTEAKQKMRELTINIKMKEDLIKELIKTGNDAksvskqySLKVTKL 284
Cdd:pfam05483 446 QAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDM-------TLELKKH 518
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 285 EHDAEQAKVELIETQKQLQELENKDLSDVAMKVKLQKEFRKKMDAAKLRvqvLQKKQQDSKKLASLSIQNEKRANELEQS 364
Cdd:pfam05483 519 QEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKCK---LDKSEENARSIEYEVLKKEKQMKILENK 595
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 365 VDHMKYQKIQLQRKLREENEKRKQLDAVIKRDQQKIKEIQLKTGQEEglkpkaedldaCNLKRRKGSFGSI-DHLQKLDE 443
Cdd:pfam05483 596 CNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLE-----------LELASAKQKFEEIiDNYQKEIE 664
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 444 QKKWLDE----EVEKVLNQRQELEELEADLKKR-EAIVSKKEALLQEKSHLENKKLRSSQEEHVLFQ-LEEGIEALEAAI 517
Cdd:pfam05483 665 DKKISEEklleEVEKAKAIADEAVKLQKEIDKRcQHKIAEMVALMEKHKHQYDKIIEERDSELGLYKnKEQEQSSAKAAL 744
|
330
....*....|....*
gi 1227523177 518 EYRNESIQNRQKSLR 532
Cdd:pfam05483 745 EIELSNIKAELLSLK 759
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
334-494 |
8.12e-04 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 42.77 E-value: 8.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 334 VQVLQKKQQDSKKLASLSIQNEKRANELEQSVDHMKYQKIQLQR--KLREENEKRKQLDAVIKRDQQKikeiqlktgqEE 411
Cdd:PRK12705 22 VVLLKKRQRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRERnqQRQEARREREELQREEERLVQK----------EE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 412 GLKPKAEDLDACNLKRRKGSFGSIDHLQKLDEQKKWLDEEVEKVLNQRQE------LEELEADLKKREAIVSKKealLQE 485
Cdd:PRK12705 92 QLDARAEKLDNLENQLEEREKALSARELELEELEKQLDNELYRVAGLTPEqarkllLKLLDAELEEEKAQRVKK---IEE 168
|
....*....
gi 1227523177 486 KSHLENKKL 494
Cdd:PRK12705 169 EADLEAERK 177
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
230-410 |
9.26e-04 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 42.89 E-value: 9.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 230 QKLKNSERILTEAKQKMRELTINIkmkEDLIKELIKTGNDAKsvskQYSLKVTKLEHDAEQAKVELIETQKQLQELENKD 309
Cdd:PRK00409 495 KRLGLPENIIEEAKKLIGEDKEKL---NELIASLEELERELE----QKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKL 567
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 310 LSdvamkvKLQKEFRKKMDAAKLRVQVLQKKQQDSKKLASLSIqnekRANELEQSvdhmkyqkiqlQRKLREENEKRKQl 389
Cdd:PRK00409 568 LE------EAEKEAQQAIKEAKKEADEIIKELRQLQKGGYASV----KAHELIEA-----------RKRLNKANEKKEK- 625
|
170 180
....*....|....*....|.
gi 1227523177 390 daviKRDQQKIKEIQLKTGQE 410
Cdd:PRK00409 626 ----KKKKQKEKQEELKVGDE 642
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
236-522 |
1.34e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.42 E-value: 1.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 236 ERILTEAKQKMRELTINIKMKEDlikELIKTGNDAKSVSKQYSLKVTKLEHDAEQAKVElietqkqlQELEnkdlsdVAM 315
Cdd:pfam17380 340 ERMAMERERELERIRQEERKREL---ERIRQEEIAMEISRMRELERLQMERQQKNERVR--------QELE------AAR 402
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 316 KVKLQKEFRKKMDAAKLRVQVLQKKQQDSKKLASLSIQNEKRANELEqsvdhmkyqkiqlqrKLREENEKRKQLDAVIKR 395
Cdd:pfam17380 403 KVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREME---------------RVRLEEQERQQQVERLRQ 467
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 396 DQQKIKEIQLKTGQEEGLKPKAEDLDACNLKrrkgsfgsidhlQKLDEQKKWLDEE------VEKVLNQRQELEELEADL 469
Cdd:pfam17380 468 QEEERKRKKLELEKEKRDRKRAEEQRRKILE------------KELEERKQAMIEEerkrklLEKEMEERQKAIYEEERR 535
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 1227523177 470 KKREAiVSKKEALLQEKSHLENKKLRSSQEEHVLFQLEEGIEALEAAIEYRNE 522
Cdd:pfam17380 536 REAEE-ERRKQQEMEERRRIQEQMRKATEERSRLEAMEREREMMRQIVESEKA 587
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
198-547 |
1.43e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 42.35 E-value: 1.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 198 ELSDTQDETQKSDLENEDLKIDCLQESQELNLQK--LKNSERILTEAKQKMRELTINIKMKEDLIKELIKTGNDAKSVSK 275
Cdd:TIGR02168 699 ALAELRKELEELEEELEQLRKELEELSRQISALRkdLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELA 778
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 276 QYSLKVTKLEHDAEQAKVELIETQKQLQELenkdlsdvamkvklqkefRKKMDAAKLRVQVLQKKQQdskklaslsiQNE 355
Cdd:TIGR02168 779 EAEAEIEELEAQIEQLKEELKALREALDEL------------------RAELTLLNEEAANLRERLE----------SLE 830
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 356 KRANELEQSVDHMKYQKIQLQRKLREENEKRKQLDAVIKRDQQKIKEIQ-LKTGQEEGLKPKAEDLDACNLKRRKGSfgs 434
Cdd:TIGR02168 831 RRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLnERASLEEALALLRSELEELSEELRELE--- 907
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 435 iDHLQKLDEQKKWLDEEVEKVLNQRQELEELEADLKkrEAIVSKKEALLQEKSHLENKKLRSSQE-EHVLFQLEEGIEAL 513
Cdd:TIGR02168 908 -SKRSELRRELEELREKLAQLELRLEGLEVRIDNLQ--ERLSEEYSLTLEEAEALENKIEDDEEEaRRRLKRLENKIKEL 984
|
330 340 350
....*....|....*....|....*....|....*....
gi 1227523177 514 ----EAAI-EYrnESIQNRQKSLRASFHNLSRGEANVLE 547
Cdd:TIGR02168 985 gpvnLAAIeEY--EELKERYDFLTAQKEDLTEAKETLEE 1021
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
243-489 |
1.84e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 41.92 E-value: 1.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 243 KQKMRELTINIK---MKEDLIKELIKTGND----AKSVSKQ----YSLKVTKLEHDAEQAKVELIETQKQLQEL--ENKD 309
Cdd:PHA02562 173 KDKIRELNQQIQtldMKIDHIQQQIKTYNKnieeQRKKNGEniarKQNKYDELVEEAKTIKAEIEELTDELLNLvmDIED 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 310 LSDVAMKVKlQKEFRKKMDAAKL-RVQVLQKKQQDSKKLASLSIQNEKRANELEQSVDHMKYQKIQLQRKLREENEKRKQ 388
Cdd:PHA02562 253 PSAALNKLN-TAAAKIKSKIEQFqKVIKMYEKGGVCPTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDE 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 389 LDAVIKrdqqKIKEIQLKTGQEEGlkpkaeDLDACNLKRRKgsfgsidhlqkldeQKKWLDEEVEKVLNQRQELEELEAD 468
Cdd:PHA02562 332 FNEQSK----KLLELKNKISTNKQ------SLITLVDKAKK--------------VKAAIEELQAEFVDNAEELAKLQDE 387
|
250 260
....*....|....*....|.
gi 1227523177 469 LKKreaIVSKKEALLQEKSHL 489
Cdd:PHA02562 388 LDK---IVKTKSELVKEKYHR 405
|
|
| Macoilin |
pfam09726 |
Macoilin family; The Macoilin proteins has an N-terminal portion that is composed of 5 ... |
283-491 |
1.92e-03 |
|
Macoilin family; The Macoilin proteins has an N-terminal portion that is composed of 5 trasnmembrane helices, followed by a C-terminal coiled-coil region. Macoilin is a highly conserved protein present in eukaryotes. Macoilin appears to be found in the ER and be involved in the function of neurons.
Pssm-ID: 462859 [Multi-domain] Cd Length: 670 Bit Score: 41.76 E-value: 1.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 283 KLEHDAEQAKVELIETQKQLQELENKDLS----DVAMKVKLQkEFRKKMDAAKLRVQ-VLQKKQQDSKKLASLsiqnEKR 357
Cdd:pfam09726 399 RLEQDIKKLKAELQASRQTEQELRSQISSltslERSLKSELG-QLRQENDLLQTKLHnAVSAKQKDKQTVQQL----EKR 473
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 358 ANELEQSvdhmkyqKIQLQRKLREENEKRKQLDAVIKRDQQKIKEIQLKTGqeEGLKPKAEDLDAcnlkrrkgsfgsidH 437
Cdd:pfam09726 474 LKAEQEA-------RASAEKQLAEEKKRKKEEEATAARAVALAAASRGECT--ESLKQRKRELES--------------E 530
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1227523177 438 LQKLDEQKKWLDEEVEKVLNQRQELEELEADLKKREAIVSKKEALLQEKSHLEN 491
Cdd:pfam09726 531 IKKLTHDIKLKEEQIRELEIKVQELRKYKESEKDTEVLMSALSAMQDKNQHLEN 584
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
222-485 |
2.28e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.59 E-value: 2.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 222 QESQELNLQKLKNSERILTEAKQKMRELTINIKMKEDLIKELiktgndaksvsKQYSLKVTKLEHDAEQAKVELIETQKQ 301
Cdd:PRK03918 510 EKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKL-----------EELKKKLAELEKKLDELEEELAELLKE 578
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 302 LQELENKDLSDVAMKVKLQKEFRKKMDAAKLRVQVLQKKQQDSKKLASLSIQNEKRANELEQSVDHMKYQKIQLQRKLRE 381
Cdd:PRK03918 579 LEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSE 658
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 382 ENEKRKQldaviKRDQQKIKEIQLKTGQEEGLKpkaedldacnlKRRKGSFGSIDHLQKLDEQKKWLDEEVEKVLNQRQE 461
Cdd:PRK03918 659 EEYEELR-----EEYLELSRELAGLRAELEELE-----------KRREEIKKTLEKLKEELEEREKAKKELEKLEKALER 722
|
250 260
....*....|....*....|....
gi 1227523177 462 LEELEADLKKREAIVskKEALLQE 485
Cdd:PRK03918 723 VEELREKVKKYKALL--KERALSK 744
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
195-574 |
2.93e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 41.60 E-value: 2.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 195 SLVELSDTQDETQKSDLENEDLKIDCLQESQELNLQKLKNSErILTEAKQKMRELTINIKMKEDLIKELIKTGNDAKSVS 274
Cdd:COG5022 883 QLQELKIDVKSISSLKLVNLELESEIIELKKSLSSDLIENLE-FKTELIARLKKLLNNIDLEEGPSIEYVKLPELNKLHE 961
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 275 KQYSLKVTKLEHDAEQAKVELIETQ--KQLQELENKDlSDVAMKVKLQKEFRKKMDAAKLRVQVLQKKQQDSKKLAS--- 349
Cdd:COG5022 962 VESKLKETSEEYEDLLKKSTILVREgnKANSELKNFK-KELAELSKQYGALQESTKQLKELPVEVAELQSASKIISSest 1040
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 350 -----LSIQNEKRANELEQSVDHMKYQKIQLQRKLREENEKRKQLDAVIKRDQQKIKEIQLKTGQEEGLKPKAEDLdacN 424
Cdd:COG5022 1041 elsilKPLQKLKGLLLLENNQLQARYKALKLRRENSLLDDKQLYQLESTENLLKTINVKDLEVTNRNLVKPANVLQ---F 1117
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 425 LKRRKGSFGSIDHLQKLDEQKKWLDEEVEKVLNQRQELEELEADLKKREAIVSKK-EALLQEKSHLENK--KLRSSQEEH 501
Cdd:COG5022 1118 IVAQMIKLNLLQEISKFLSQLVNTLEPVFQKLSVLQLELDGLFWEANLEALPSPPpFAALSEKRLYQSAlyDEKSKLSSS 1197
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 502 VLFQLEEGIEaleaAIEYRNESIQNRQKSLR--------ASFHNLSRGEANVLEKLACLSPVEIRTILFRYFNKVVNLRE 573
Cdd:COG5022 1198 EVNDLKNELI----ALFSKIFSGWPRGDKLKklisegwvPTEYSTSLKGFNNLNKKFDTPASMSNEKLLSLLNSIDNLLS 1273
|
.
gi 1227523177 574 A 574
Cdd:COG5022 1274 S 1274
|
|
| TOPEUc |
smart00435 |
DNA Topoisomerase I (eukaryota); DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina ... |
246-383 |
3.14e-03 |
|
DNA Topoisomerase I (eukaryota); DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina virus topoisomerase, Variola virus topoisomerase, Shope fibroma virus topoisomeras
Pssm-ID: 214661 [Multi-domain] Cd Length: 391 Bit Score: 40.80 E-value: 3.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 246 MRELTINIKMKEDLIKELIKTGNDA-----------KSVSKQYSLKVTKLEHDAEQAKVELIETQKQLQELENKDLSDVA 314
Cdd:smart00435 233 LQEQLKELTAKDGNVAEKILAYNRAnrevailcnhqRTVSKTHEKSMEKLQEKIKALKYQLKRLKKMILLFEMISDLKRK 312
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1227523177 315 MKVKLQKEFRkkmdaaKLRVQVLQKKQQDSKKLASlsiqnEKRANELEQSVdhmkyQKIQLQRKLREEN 383
Cdd:smart00435 313 LKSKFERDNE------KLDAEVKEKKKEKKKEEKK-----KKQIERLEERI-----EKLEVQATDKEEN 365
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
198-493 |
3.42e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.21 E-value: 3.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 198 ELSDTQDETQKSDLENEDLKIDCLQESQELNLQKLKNSERILTEAKQKMRELTINI-KMKEDLIKELIKTGNDAKSVSKQ 276
Cdd:TIGR02169 726 EQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALnDLEARLSHSRIPEIQAELSKLEE 805
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 277 YSLKVTKLEHDAEQaKVELIETQKQLQELENKDLSDVAMKVKLQK-EFRKKMDAAKLRvqvLQKKQQDSKKLASLSIQNE 355
Cdd:TIGR02169 806 EVSRIEARLREIEQ-KLNRLTLEKEYLEKEIQELQEQRIDLKEQIkSIEKEIENLNGK---KEELEEELEELEAALRDLE 881
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 356 KRANELEQSVDHMKYQKIQLQRKLREENEKRKQLDAVIKRDQQKIKEIQLKTGQEEGLKPKAEDLDACNLKrrkgsfgsi 435
Cdd:TIGR02169 882 SRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELS--------- 952
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1227523177 436 dhLQKLDEQKKWLDEEVEKV--LNQR--QELEELEADL----KKREAIVSKKEALLQEKSHLENKK 493
Cdd:TIGR02169 953 --LEDVQAELQRVEEEIRALepVNMLaiQEYEEVLKRLdelkEKRAKLEEERKAILERIEEYEKKK 1016
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
239-497 |
3.93e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.52 E-value: 3.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 239 LTEAKQKMRELTINIKMKEDLIKELIKTGNDAKSVSKQYSLKVTKLEHDAEQAKVELIETQKQLQELENKdlsdvamKVK 318
Cdd:COG4942 22 AAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKE-------IAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 319 LQKEFRKKMDAAKLRVQVLQKKQQDSKKLASLSIQNekrANELEQSVDHMKYQKIQLQRKLREENEKRKQLDAVIKRDQQ 398
Cdd:COG4942 95 LRAELEAQKEELAELLRALYRLGRQPPLALLLSPED---FLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEA 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 399 KIKEIQ-LKTGQEEglkpkaedldacnlkrrkgsfgsidHLQKLDEQKKWLDEEVEKVLNQRQELEELEADLKKREAIVS 477
Cdd:COG4942 172 ERAELEaLLAELEE-------------------------ERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELE 226
|
250 260
....*....|....*....|
gi 1227523177 478 KKEALLQEKSHLENKKLRSS 497
Cdd:COG4942 227 ALIARLEAEAAAAAERTPAA 246
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
369-685 |
4.03e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 40.81 E-value: 4.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 369 KYQKIQLQRKLREENEKRKQLDAVIKRDQQKIKEIQLKTGQEEGLKPKAEDLDacNLKRRKgsfgSIDHLQKLDEQKKWL 448
Cdd:TIGR02168 171 KERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELR--ELELAL----LVLRLEELREELEEL 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 449 DEEVEKVlnqRQELEELEADLKKREAIVSKKEALLQEKshleNKKLRSSQEEhvLFQLEEGIEALEAAIeyrnESIQNRQ 528
Cdd:TIGR02168 245 QEELKEA---EEELEELTAELQELEEKLEELRLEVSEL----EEEIEELQKE--LYALANEISRLEQQK----QILRERL 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 529 KSLRASFHNLSRGEANVLEKLACLSpveirtilfryfnkvVNLREAERKQQLYNEEMKMKVLERDNMVRELESALDHLKL 608
Cdd:TIGR02168 312 ANLERQLEELEAQLEELESKLDELA---------------EELAELEEKLEELKEELESLEAELEELEAELEELESRLEE 376
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1227523177 609 QCDRRLTLQQKEHEQKMQLLLhhfkeqdgegIMETFKTYEDKIQQLEKDLYFYKKTSRDHKKKLKELVGEAIRRQLA 685
Cdd:TIGR02168 377 LEEQLETLRSKVAQLELQIAS----------LNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELE 443
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
279-495 |
4.43e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 40.79 E-value: 4.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 279 LKVTKLEHDAEQAKvELIETQKQLQELENKdLSDVamkVKLQKEFRKKMDAAKLRVQVLQKKQQDskkLASLSIQNEKRA 358
Cdd:PRK02224 489 EEVEEVEERLERAE-DLVEAEDRIERLEER-REDL---EELIAERRETIEEKRERAEELRERAAE---LEAEAEEKREAA 560
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 359 NELEQSVDHMKYQKIQLQRKLREENEKRKQLDAVIKRDQqkikEIQLKTGQEEGLKPKAEDLDACNLKRRkgsfgsiDHL 438
Cdd:PRK02224 561 AEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLA----AIADAEDEIERLREKREALAELNDERR-------ERL 629
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 439 QKLDEQKKWLDEEV-------------------EKVLNQRQELEELEADLKKR----EAIVSKKEALLQEKSHLENKKLR 495
Cdd:PRK02224 630 AEKRERKRELEAEFdearieearedkeraeeylEQVEEKLDELREERDDLQAEigavENELEELEELRERREALENRVEA 709
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
257-500 |
7.68e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 39.43 E-value: 7.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 257 EDLIKELIKTGNDAKSVSKQYSLKVTKLEHDAEQAKVELIETQKQLQELENKdlSDVAMK--VKLQKEFRKKMDAAKLRV 334
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAE--IDKLQAeiAEAEAEIEERREELGERA 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 335 QVLQKKQQDSKKLASLSiqnekRANELEQSVDHMKYqkiqlqrklreenekrkqLDAVIKRDQQKIKEIQLKTGQEEGLK 414
Cdd:COG3883 93 RALYRSGGSVSYLDVLL-----GSESFSDFLDRLSA------------------LSKIADADADLLEELKADKAELEAKK 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 415 PKAEDLdacnlkrrkgsfgsidhLQKLDEQKKWLDEEVEKVLNQRQELEELEADLKKREAIVSKKEALLQEKSHLENKKL 494
Cdd:COG3883 150 AELEAK-----------------LAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAA 212
|
....*.
gi 1227523177 495 RSSQEE 500
Cdd:COG3883 213 AAAAAA 218
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
264-515 |
8.12e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 40.12 E-value: 8.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 264 IKTGNDAKSVSKQYSLKVTKLEHDAEQAKveLIETQKQLQELENKDLSDVAMKVKLQKEFRKKMDAAK----LRVQVLQK 339
Cdd:PTZ00121 1178 AEAARKAEEVRKAEELRKAEDARKAEAAR--KAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKkaeeERNNEEIR 1255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 340 KQQDSKKLASLSIQNEKRANELEQSVDHMKYQKIQLQRKLREENEKRKqLDAVIKRDQQKIKEIQLKTGQEEG------L 413
Cdd:PTZ00121 1256 KFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKK-ADEAKKKAEEAKKADEAKKKAEEAkkkadaA 1334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 414 KPKAEDLDACNLKRRKGSFGSIDHLQKLDEQKKWLDEEVEKVLNQRQELEELEADLKKREAIVSKKEALLQEKSHLENKK 493
Cdd:PTZ00121 1335 KKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAA 1414
|
250 260
....*....|....*....|..
gi 1227523177 494 LRSSQEEHVLFQLEEGIEALEA 515
Cdd:PTZ00121 1415 AAKKKADEAKKKAEEKKKADEA 1436
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
225-675 |
9.22e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 39.66 E-value: 9.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 225 QELNLQKLKNSERILTEAKQkmreltiNIKMKEDLIKELIKTGNDAKSVSKQYSLKVTKLEHDAEQAKVELIETQKQLQE 304
Cdd:PRK03918 153 QILGLDDYENAYKNLGEVIK-------EIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEK 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 305 LENKDLSDVAMKVKLQ--------------------KEFRKKMDAAKLRVQVLQKKQQDSK----------KLASLSIQN 354
Cdd:PRK03918 226 LEKEVKELEELKEEIEelekeleslegskrkleekiRELEERIEELKKEIEELEEKVKELKelkekaeeyiKLSEFYEEY 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 355 EKRANELEQSVDHMKYQKIQLQRKLREENEKRKQLD-------------AVIKRDQQKIKEIQLKTGQEEGLKPKAEDLD 421
Cdd:PRK03918 306 LDELREIEKRLSRLEEEINGIEERIKELEEKEERLEelkkklkelekrlEELEERHELYEEAKAKKEELERLKKRLTGLT 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 422 ACNLKRRkgsfgsidhLQKLDEQKKWLDEEVEKVLNQRQELEELEADLKKreAIVSKKEAllQEKSHLENKKLrssQEEH 501
Cdd:PRK03918 386 PEKLEKE---------LEELEKAKEEIEEEISKITARIGELKKEIKELKK--AIEELKKA--KGKCPVCGREL---TEEH 449
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 502 VLFQLEEGIEALEaAIEYRNESIQNRQKSLRASFHNLsRGEANVLEKLACLSPVEIRTILFRYFNKVVNLREAERKQQLY 581
Cdd:PRK03918 450 RKELLEEYTAELK-RIEKELKEIEEKERKLRKELREL-EKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEY 527
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227523177 582 nEEMKMKVLERDNMVRELESALDHLKLQCDRRLTLQQKEHEQKMQLL-LHHFKEQDGegiMETFKTYEDKIQQLEKdlyF 660
Cdd:PRK03918 528 -EKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAeLLKELEELG---FESVEELEERLKELEP---F 600
|
490
....*....|....*..
gi 1227523177 661 YKK--TSRDHKKKLKEL 675
Cdd:PRK03918 601 YNEylELKDAEKELERE 617
|
|
| |
