|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
698-1395 |
3.42e-19 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 94.35 E-value: 3.42e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 698 LKRQLEEKEKLLATEQEDAAVAKskLRELNKEMAAEKAKAAAGEAkvkkQLVAREQEITAVQAR---MQASYREHVKEVQ 774
Cdd:TIGR02168 218 LKAELRELELALLVLRLEELREE--LEELQEELKEAEEELEELTA----ELQELEEKLEELRLEvseLEEEIEELQKELY 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 775 QLQGKIRTLQEQLENGpNTQLARLQQENSILRDALNQATSQVEsKQNAELAKLRQELSKVSKELVEKSEAVRQDEQQRKA 854
Cdd:TIGR02168 292 ALANEISRLEQQKQIL-RERLANLERQLEELEAQLEELESKLD-ELAEELAELEEKLEELKEELESLEAELEELEAELEE 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 855 LEAKAAAFEKQVLQLQ---ASHRESEEALQKRLDEVSRELCHTQSSHASLRADAEKAQEQQqqmaelhsklqsSEAEVRS 931
Cdd:TIGR02168 370 LESRLEELEEQLETLRskvAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKL------------EEAELKE 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 932 KCEELSGLHGQLQEARAENSQLTERIRSIEALLEAGQardaQDVQASQAEADQQQTRLKELESQVSGLEKEAIELREAVE 1011
Cdd:TIGR02168 438 LQAELEELEEELEELQEELERLEEALEELREELEEAE----QALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLK 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1012 QQKVKNNDL---------REKNWKAMEA---------LATAEQACKEKLLSLTQAK-------EESEKQLCLIEAQTMEA 1066
Cdd:TIGR02168 514 NQSGLSGILgvlselisvDEGYEAAIEAalggrlqavVVENLNAAKKAIAFLKQNElgrvtflPLDSIKGTEIQGNDREI 593
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1067 LLALLPELSVLAQ----------------------QNYTEWLQDLKEKGP-----TL---LKHP-----PAPAEPSS--- 1108
Cdd:TIGR02168 594 LKNIEGFLGVAKDlvkfdpklrkalsyllggvlvvDDLDNALELAKKLRPgyrivTLdgdLVRPggvitGGSAKTNSsil 673
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1109 -------DLASKLREAEETQSTLQAECDQYRSILAETEGMLRDLQKSVEEEEQvwraKVGAAEEELQKSRVTVKHLEEIV 1181
Cdd:TIGR02168 674 errreieELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSR----QISALRKDLARLEAEVEQLEERI 749
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1182 EKLKGELESSDQVREHTSHLEAELEKHMAAASAECQNYAKEVAGLRQLLLESQSQLDAAKSEAQKQSDELALVRQQLSEM 1261
Cdd:TIGR02168 750 AQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESL 829
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1262 KSHVEDgdiagapasspeappaeqdpvqLKTQLEWTEAILEDEQTQRQKLTAEFEEAQTSACRLQEELEKL-----RTAG 1336
Cdd:TIGR02168 830 ERRIAA----------------------TERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALlneraSLEE 887
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*....
gi 1475928828 1337 PLESSETEEASQLKERLEKEKKLtSDLGRAATRLQELLKTTQEQLAREKDTVKKLQEQL 1395
Cdd:TIGR02168 888 ALALLRSELEELSEELRELESKR-SELRRELEELREKLAQLELRLEGLEVRIDNLQERL 945
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
753-1335 |
2.55e-18 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 91.54 E-value: 2.55e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 753 QEITAVQARMQASYREHVK-EVQQLQGKIRTLQEQLENGpNTQLARLQQENSILRDALNQATSQVESKQnAELAKLRQEL 831
Cdd:COG1196 220 EELKELEAELLLLKLRELEaELEELEAELEELEAELEEL-EAELAELEAELEELRLELEELELELEEAQ-AEEYELLAEL 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 832 SKVSKELVEKSEAVRQDEQQRKALEAKAAAFEKQVLQLQA---SHRESEEALQKRLDEVSRELCHTQSSHASLRADAEKA 908
Cdd:COG1196 298 ARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEeleELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEA 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 909 QEQQQQMAELHSKLQSSEAEVRSKCEELSGLHGQLQEARAENSQLTERIRSIEALLEAGQARDAQDVQASQAEADQQQTR 988
Cdd:COG1196 378 EEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEE 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 989 LKELESQVSGLEKEAIELREAVEQQKVKNNDLREKNWKAMEALATAEQACKEKLLSLTQAKEESEKQLCLIEAQT-MEAL 1067
Cdd:COG1196 458 EEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVeAAYE 537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1068 LALLPELSVLAQQNYTEWLQDLKEKGPTLLKHPPAPAEPSSDLASKLREAEETQSTLQAECDQYRSI--LAETEGMLRDL 1145
Cdd:COG1196 538 AALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVasDLREADARYYV 617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1146 QKSVEEEEQVWRAKVGAAEEELQKSRVTVKHLEEIVEKLKGELESSDQVREHTSHLEAELEKHMAAASAECQNYAKEVAG 1225
Cdd:COG1196 618 LGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEE 697
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1226 LRQLLLESQSQLDAAKSEAQKQSDELALVRQQLSEMKSHVEDGDIAGAPASSPEAPPAEQDPVQLKTQlewtEAILEDEQ 1305
Cdd:COG1196 698 ALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEEL----ERELERLE 773
|
570 580 590
....*....|....*....|....*....|....*..
gi 1475928828 1306 TQRQKLTA-------EFEEAQTSACRLQEELEKLRTA 1335
Cdd:COG1196 774 REIEALGPvnllaieEYEELEERYDFLSEQREDLEEA 810
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
764-1400 |
5.48e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 87.03 E-value: 5.48e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 764 ASYREHVKEVQQLQGKIRTLQEQLENGpNTQLARLQQENSILRDALNQATSQVESKQnAELAKLRQELSKVSKELVEKSE 843
Cdd:TIGR02168 232 LRLEELREELEELQEELKEAEEELEEL-TAELQELEEKLEELRLEVSELEEEIEELQ-KELYALANEISRLEQQKQILRE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 844 AVRQDEQQRKALEAKAAAFEKQVLQLQashrESEEALQKRLDEVSRELCHTQSSHASLRADAEKaqeqqqqmaeLHSKLQ 923
Cdd:TIGR02168 310 RLANLERQLEELEAQLEELESKLDELA----EELAELEEKLEELKEELESLEAELEELEAELEE----------LESRLE 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 924 SSEAEVRSKCEELSGLHGQLQEARAENSQLTERIRSIEAlleagqARDAQDVQASQAEADQQQTRLKELESQVSGLEKEA 1003
Cdd:TIGR02168 376 ELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLED------RRERLQQEIEELLKKLEEAELKELQAELEELEEEL 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1004 IELR---EAVEQQKVKNNDLREKNWKAMEALATAEQACKEKLLSLtQAKEESEKQLCLIEAQTMEALLALLPELSVLAQQ 1080
Cdd:TIGR02168 450 EELQeelERLEEALEELREELEEAEQALDAAERELAQLQARLDSL-ERLQENLEGFSEGVKALLKNQSGLSGILGVLSEL 528
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1081 -------------------------NYTEWLQD---LKEKGPTLLKHPPAPAEPSSDLASKLREAEETQSTLQAECDQYR 1132
Cdd:TIGR02168 529 isvdegyeaaieaalggrlqavvveNLNAAKKAiafLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLV 608
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1133 SILAETEGMLRDLqksveeeeqVWRAKVGAAEEELQKSRVTVKHLEEIVeKLKGELESSDQV------REHTSHLE---- 1202
Cdd:TIGR02168 609 KFDPKLRKALSYL---------LGGVLVVDDLDNALELAKKLRPGYRIV-TLDGDLVRPGGVitggsaKTNSSILErrre 678
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1203 -AELEKHMAAASAECQNYAKEVAGLRQLLLESQSQLDAAKSEAQKQSDELALVRQQLSEMKSHVEDGDIAGAPASSPEAP 1281
Cdd:TIGR02168 679 iEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTE 758
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1282 PAEQDPVQLKTQLEWTEAILEDEQtQRQKLTAEFEEAQTSACRLQEELEKLRTAgplESSETEEASQLKERLEKEKKLTS 1361
Cdd:TIGR02168 759 LEAEIEELEERLEEAEEELAEAEA-EIEELEAQIEQLKEELKALREALDELRAE---LTLLNEEAANLRERLESLERRIA 834
|
650 660 670
....*....|....*....|....*....|....*....
gi 1475928828 1362 DLGRAATRLQELLKTTQEQLAREKDTVKKLQEQLEKAED 1400
Cdd:TIGR02168 835 ATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELES 873
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
290-1020 |
5.69e-15 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 80.96 E-value: 5.69e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 290 RKAEGAQnQAKKVEGAQNQGKKAEGAQNQGKKGEGAQNQGKKAEGAQNQGKKAEGAQN-----QGKKAEGAQNQGKKAEG 364
Cdd:PTZ00121 1194 RKAEDAR-KAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNneeirKFEEARMAHFARRQAAI 1272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 365 AQNQGKKAEGAQN--QGKKAEGAQN--QGKKVEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQN--Q 438
Cdd:PTZ00121 1273 KAEEARKADELKKaeEKKKADEAKKaeEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKaeA 1352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 439 GKKAEGAQNQGKKAEGAQ----NQGKKAEGAQNQGKKVEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGQKGEG 514
Cdd:PTZ00121 1353 EAAADEAEAAEEKAEAAEkkkeEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKK 1432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 515 AQNQGKKTEgaQGKKAERSPNQGKKGEGAPIQGKKADsvanQGTKVEGITNQGKKAEGSPSEGKKAEGSPNQGKKADAAA 594
Cdd:PTZ00121 1433 ADEAKKKAE--EAKKADEAKKKAEEAKKAEEAKKKAE----EAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAA 1506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 595 NQGKKTESA--SVQGRNTDVAQSPEAPKQEAPAKKKSGSKKKGEPGPPDAdgplylpyktlvstvgsmvFNEGEAQRLIE 672
Cdd:PTZ00121 1507 EAKKKADEAkkAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEE-------------------LKKAEEKKKAE 1567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 673 ilsEKAGIIQDTWHKATQKGDPVAILKRQLEEKEKLLATEQEDAAVAKSKLRElnkemaaekakaaageAKVKKQLVARE 752
Cdd:PTZ00121 1568 ---EAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEE----------------AKIKAEELKKA 1628
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 753 QEITAVQARMQASYREHVKEVQQLQGkirtlQEQLENGPNTQLARLQQENSilRDALNQATSQVESKQNAELAKLRQELS 832
Cdd:PTZ00121 1629 EEEKKKVEQLKKKEAEEKKKAEELKK-----AEEENKIKAAEEAKKAEEDK--KKAEEAKKAEEDEKKAAEALKKEAEEA 1701
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 833 KVSKELVEK-SEAVRQDEQQRKALEAKAAAFEKQVLQLQASHRESEEAlqkRLDEVSRELCHTQSSHASLRADAEKAQEQ 911
Cdd:PTZ00121 1702 KKAEELKKKeAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEA---KKDEEEKKKIAHLKKEEEKKAEEIRKEKE 1778
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 912 QQQMAELHSKLQSSEAEVRSKCEELSGLHGQLQEARAENSQLTERIRSIEaLLEAGQARDAQDVQASQAEADQQQTRLKE 991
Cdd:PTZ00121 1779 AVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEME-DSAIKEVADSKNMQLEEADAFEKHKFNKN 1857
|
730 740 750 760
....*....|....*....|....*....|....*....|.
gi 1475928828 992 LESQVSG------------LEKEAIELREAVEQQKVKNNDL 1020
Cdd:PTZ00121 1858 NENGEDGnkeadfnkekdlKEDDEEEIEEADEIEKIDKDDI 1898
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
821-1383 |
1.09e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 79.60 E-value: 1.09e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 821 NAELAKLRQELSKVSKELVEKSEAVRQDEQQRKALEAKAAAFEKQVLQLQAshreSEEALQKRLDEVSRELCHTQSSHAS 900
Cdd:COG1196 238 EAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQA----EEYELLAELARLEQDIARLEERRRE 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 901 LRADAEKAQEQQQQMAELHSKLQSSEAEVRSKCEELSGLHGQLQEARAENSQLTERIRSIEALLEAGQARDAQDVQASQA 980
Cdd:COG1196 314 LEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALR 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 981 EADQQQTRLKELESQVSGLEKEAIELREAVEQQKVKNNDLREknwkAMEALATAEQACKEKLLSLTQAKEESEKQLCLIE 1060
Cdd:COG1196 394 AAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEE----EEEEEEEALEEAAEEEAELEEEEEALLELLAELL 469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1061 AQTMEALLALLPELSVLAQQNYTEWLQDLKEKGPTLLKHPPAPAEPSSDLASKLREAEETQSTLQAEcdqyrSILAETEG 1140
Cdd:COG1196 470 EEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAY-----EAALEAAL 544
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1141 MLRDLQKSVEEEEQVWRAKVGAAEEELqkSRVTVKHLEEIVEKLKGELESSDQVREHTSHLEAELEKHMAAASAECQNYA 1220
Cdd:COG1196 545 AAALQNIVVEDDEVAAAAIEYLKAAKA--GRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTL 622
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1221 KEVAGLRQLLLESQSQLDAAKSEAQKQSDELALVRQQLSEMKSHVEDGdiagapasspeappAEQDPVQLKTQLEWTEAI 1300
Cdd:COG1196 623 LGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRREL--------------LAALLEAEAELEELAERL 688
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1301 LEDEQTQRQKLTAEFEEAQTSACRLQEELEKLRTAGPLESSETEEASQLKERLEKEKKLTSDLGRAATRLQELLKTTQEQ 1380
Cdd:COG1196 689 AEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERE 768
|
...
gi 1475928828 1381 LAR 1383
Cdd:COG1196 769 LER 771
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
171-621 |
9.11e-14 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 76.72 E-value: 9.11e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 171 ETAPKEVPMVVVPPVGAKGNTPATGTTQGKKAEGTQNQSKKAEGA----PNQGRKAEGTPNQGKKTEGTPNQGKKAEGTP 246
Cdd:PTZ00121 1325 EEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAekkkEEAKKKADAAKKKAEEKKKADEAKKKAEEDK 1404
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 247 NQGKKAEGTPNQGKKAEGAQNQGKKVDTTPNQGKKVEgaptQGRKAEGAQNQAKKVEGAQNQGKKAEgaqnQGKKGEGAQ 326
Cdd:PTZ00121 1405 KKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAE----EAKKADEAKKKAEEAKKAEEAKKKAE----EAKKADEAK 1476
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 327 NQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQN--QGKKAEGAQN--QGKKAEGAQNQGKKVEGAQ----NQ 398
Cdd:PTZ00121 1477 KKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKaeEAKKADEAKKaeEAKKADEAKKAEEKKKADElkkaEE 1556
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 399 GKKAEGAQN--QGKKAEGAQNQG-------KKAEGAQNQGKKAEGAQNQGKKAEgaqnQGKKAEGAQNQGKKAEGAQNQG 469
Cdd:PTZ00121 1557 LKKAEEKKKaeEAKKAEEDKNMAlrkaeeaKKAEEARIEEVMKLYEEEKKMKAE----EAKKAEEAKIKAEELKKAEEEK 1632
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 470 KKVEGAQNQGKKAEGAQNQGKKAEgAQNQGKKAEGAQNQGQKGEGAQnQGKKTEGAQGKKAERSPNQGKkgegapiQGKK 549
Cdd:PTZ00121 1633 KKVEQLKKKEAEEKKKAEELKKAE-EENKIKAAEEAKKAEEDKKKAE-EAKKAEEDEKKAAEALKKEAE-------EAKK 1703
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1475928828 550 ADSVANQGTKVEGITNQGKKAE---GSPSEGKKAEGSPNQGKKADAAANQGKKTESASVQGRNTDVAQSPEAPKQ 621
Cdd:PTZ00121 1704 AEELKKKEAEEKKKAEELKKAEeenKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKE 1778
|
|
| Rib_recp_KP_reg |
pfam05104 |
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards ... |
33-168 |
9.42e-14 |
|
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards the C-terminus of the transmembrane domain. The function is unclear.
Pssm-ID: 461548 [Multi-domain] Cd Length: 140 Bit Score: 69.77 E-value: 9.42e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 33 MKETSYEEALANQRKEMAKTHhQKVEKKKKEKTVEKKGKTKKKEEKPNGKIPDHDPAPNVTVLLRE---PVRAPAVAVAP 109
Cdd:pfam05104 1 MKETSYEEALAKQRRELKKTP-TEKEKKKKEKKKEKKKKSKKKEEKPNGKLPESEQADESEEEPREfktPDEAPSAALEP 79
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 1475928828 110 TPVqPPIIVAPVATVPAMPQEKLASSPKDKKKKEKKVAKVEPAVSSVVNSIQVLTSKAA 168
Cdd:pfam05104 80 EPV-PTPVPAPVEPEPAPPSESPAPSPKEKKKKEKKSAKVEPAETPEAVQPKPALEKEE 137
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
767-1400 |
1.34e-13 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 76.11 E-value: 1.34e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 767 REHVKEVQQLQGKIRTLQEQLEngpntQLARLQQENSILRDALNQATSQVESKQNAELAKLRQELSKVSKELVEKSEAVR 846
Cdd:COG4913 231 VEHFDDLERAHEALEDAREQIE-----LLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 847 QDEQQRKALEAKAAAFEKQVLQLQASHRES----EEALQKRLDEVSRELCHTQSSHASLRADAEKaqeqqqqmaeLHSKL 922
Cdd:COG4913 306 RLEAELERLEARLDALREELDELEAQIRGNggdrLEQLEREIERLERELEERERRRARLEALLAA----------LGLPL 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 923 QSSEAEvrskceelsglhgqLQEARAENSQLTERIRSIEALLEAGQARDAQDVQASQAEADQQQTRLKELESQVSGLEKE 1002
Cdd:COG4913 376 PASAEE--------------FAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPAR 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1003 AIELREAVEQQ-KVKNNDLR-----------EKNWkamealataeQACKEKLLSlTQAkeesekqLCLIeaqtmeallal 1070
Cdd:COG4913 442 LLALRDALAEAlGLDEAELPfvgelievrpeEERW----------RGAIERVLG-GFA-------LTLL----------- 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1071 lpelsvLAQQNY---TEWLQDLKEKG-------PTLLKHPPAPAEPSSDLASKLrEAEET--QSTLQAEC-DQYRSILAE 1137
Cdd:COG4913 493 ------VPPEHYaaaLRWVNRLHLRGrlvyervRTGLPDPERPRLDPDSLAGKL-DFKPHpfRAWLEAELgRRFDYVCVD 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1138 TEGMLRDLQKSVEEEEQV------------------W------RAKVGAAEEELQKSRVTVKHLEEIVEKLKGELESSDQ 1193
Cdd:COG4913 566 SPEELRRHPRAITRAGQVkgngtrhekddrrrirsrYvlgfdnRAKLAALEAELAELEEELAEAEERLEALEAELDALQE 645
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1194 VREHTSHLE--AELEKHMAAASAECQNYAKEVAGLRQ---LLLESQSQLDAAKSEAQKQSDELALVRQQLSEMKSHVED- 1267
Cdd:COG4913 646 RREALQRLAeySWDEIDVASAEREIAELEAELERLDAssdDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQa 725
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1268 -GDIAGAPASSPEAPPAEQDPVQLKTQLEWTEAILED-EQTQRQKLTAEFEEAQTSACRLQEELEKLRTA----GPLESS 1341
Cdd:COG4913 726 eEELDELQDRLEAAEDLARLELRALLEERFAAALGDAvERELRENLEERIDALRARLNRAEEELERAMRAfnreWPAETA 805
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1475928828 1342 E----TEEASQLKERLEKEKklTSDLGRAATRLQELLKTTQEQLarekdtVKKLQEQLEKAED 1400
Cdd:COG4913 806 DldadLESLPEYLALLDRLE--EDGLPEYEERFKELLNENSIEF------VADLLSKLRRAIR 860
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
698-1395 |
2.75e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.54 E-value: 2.75e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 698 LKRQLEEKEKLLATEQEDAAVAKSKLRELNKEMAAEKAKAAAGEAkvkkQLVAREQEITAVQARmqasYREHVKEVQQLQ 777
Cdd:TIGR02168 328 LESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELES----RLEELEEQLETLRSK----VAQLELQIASLN 399
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 778 GKIRTLQEQLEnGPNTQLARLQQENSILRDALNQATSQvesKQNAELAKLRQELSKVSKELVEKSEAVRQDEQQRKALEA 857
Cdd:TIGR02168 400 NEIERLEARLE-RLEDRRERLQQEIEELLKKLEEAELK---ELQAELEELEEELEELQEELERLEEALEELREELEEAEQ 475
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 858 KAAAFEKQVLQLQAsHRESEEALQKRLDEVSRELchtqsshaslrADAEKAQEQQQQMAELHSKLQSSEAEVRSKCEELS 937
Cdd:TIGR02168 476 ALDAAERELAQLQA-RLDSLERLQENLEGFSEGV-----------KALLKNQSGLSGILGVLSELISVDEGYEAAIEAAL 543
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 938 GLHGQLQEARAENSQlterIRSIEALLEAGQAR---------DAQDVQASQAEADQQQTR----LKELESQVSGLEKE-- 1002
Cdd:TIGR02168 544 GGRLQAVVVENLNAA----KKAIAFLKQNELGRvtflpldsiKGTEIQGNDREILKNIEGflgvAKDLVKFDPKLRKAls 619
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1003 --------AIELREAVEQQKVKNNDLR---------------------------------EKNWKAMEALATAEQACKEK 1041
Cdd:TIGR02168 620 yllggvlvVDDLDNALELAKKLRPGYRivtldgdlvrpggvitggsaktnssilerrreiEELEEKIEELEEKIAELEKA 699
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1042 LLSLTQAKEESEKQLCLIEAQTMEALLALLPELSVLA-----QQNYTEWLQDLKEKGPTLLKHPPAPAEPSSDLASKLRE 1116
Cdd:TIGR02168 700 LAELRKELEELEEELEQLRKELEELSRQISALRKDLArleaeVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAE 779
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1117 AEETQSTLQAECDQYRSILAETEGMLRDLQKSVEEEEQVWRAKVGAAEEELQKSRVTVKHLEEIV---EKLKGELESSDQ 1193
Cdd:TIGR02168 780 AEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEeqiEELSEDIESLAA 859
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1194 VREHTSHLEAELEKHMAAASAECQNYAKEVAGLRQLLLESQSQLDAAKSEAQKQSDELALVRQQLSEMKSHVEDgdiaga 1273
Cdd:TIGR02168 860 EIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEG------ 933
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1274 passpeappAEQDPVQLKTQL-EWTEAILEDEQTQRQKLTAEFEEAQTSACRLQEELEKLrtaGPLESSETEEASQLKER 1352
Cdd:TIGR02168 934 ---------LEVRIDNLQERLsEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKEL---GPVNLAAIEEYEELKER 1001
|
730 740 750 760
....*....|....*....|....*....|....*....|....
gi 1475928828 1353 LEKEKKLTSDLGRAATRLQELL-KTTQEQLAREKDTVKKLQEQL 1395
Cdd:TIGR02168 1002 YDFLTAQKEDLTEAKETLEEAIeEIDREARERFKDTFDQVNENF 1045
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
766-1053 |
7.30e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 67.02 E-value: 7.30e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 766 YREHVKEVQQLQGKIRTLQEQLeNGPNTQLARLQQENSILRDALNQATSQVESKQNaELAKLRQELSKVSKELVEKSEAV 845
Cdd:TIGR02169 669 SRSEPAELQRLRERLEGLKREL-SSLQSELRRIENRLDELSQELSDASRKIGEIEK-EIEQLEQEEEKLKERLEELEEDL 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 846 RQDEQQRKALEAKAAAFEKQVLQLQashrESEEALQKRLDEVSRELchtqsSHASLRADAEKAQEQQQQMAELHSKLQSS 925
Cdd:TIGR02169 747 SSLEQEIENVKSELKELEARIEELE----EDLHKLEEALNDLEARL-----SHSRIPEIQAELSKLEEEVSRIEARLREI 817
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 926 EAEVRSKCEELSGLHGQLQEARAENSQLTERIRSIEALLEAGQARdaqdVQASQAEADQQQTRLKELESQVSGLEKEAIE 1005
Cdd:TIGR02169 818 EQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGK----KEELEEELEELEAALRDLESRLGDLKKERDE 893
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1475928828 1006 LREAVEQQKVKNNDL---REKNWKAMEALATAEQACKEKLLSLTQAKEESE 1053
Cdd:TIGR02169 894 LEAQLRELERKIEELeaqIEKKRKRLSELKAKLEALEEELSEIEDPKGEDE 944
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
806-1196 |
3.08e-10 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 65.06 E-value: 3.08e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 806 RDALNQATSQVESKQNAE----LAKLRQELSKVSKELVEKSEAVRQDEQQRKALEAKAAAFEK----------QVLQLQA 871
Cdd:PRK02224 186 RGSLDQLKAQIEEKEEKDlherLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEErreeletleaEIEDLRE 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 872 SHRESE---EALQKRLDEVSRELCHTQSSHASLRADAEKAQEQQQQMAELHSKLQSSEAEVRskcEELSGLHGQLQEARA 948
Cdd:PRK02224 266 TIAETErerEELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELR---DRLEECRVAAQAHNE 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 949 ENSQLTERIRSIEAllEAGQARDAQDVQASQAEADQQQtrLKELESQVSGLEKEAIELREAVEQQKVKNNDLREKNWKAM 1028
Cdd:PRK02224 343 EAESLREDADDLEE--RAEELREEAAELESELEEAREA--VEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELR 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1029 EALATAEQACKEKLLSLTQAKEESEKQLCLIEA---QTMEALLALLPELSVLAQ-----QNYTEWLQDLKEKGPTLLKHP 1100
Cdd:PRK02224 419 EERDELREREAELEATLRTARERVEEAEALLEAgkcPECGQPVEGSPHVETIEEdrervEELEAELEDLEEEVEEVEERL 498
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1101 PApAEPSSDLASKLREAEETQSTLQAECDQYRSILAETEGMLRDLQKSVEE---EEQVWRAKVGAAEEELQKSRVTVKHL 1177
Cdd:PRK02224 499 ER-AEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAEleaEAEEKREAAAEAEEEAEEAREEVAEL 577
|
410
....*....|....*....
gi 1475928828 1178 EEIVEKLKGELESSDQVRE 1196
Cdd:PRK02224 578 NSKLAELKERIESLERIRT 596
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
652-1012 |
5.68e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.31 E-value: 5.68e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 652 TLVSTVGSMVF--NEGEAQRL-----IEILSEKAGIIQDTWHKATQKGDPVAILKRQLEEKEKLLATEQEDAAVAKSKLR 724
Cdd:TIGR02168 653 DLVRPGGVITGgsAKTNSSILerrreIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALR 732
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 725 ELNKEMAAEKAKAAAGEAKVKKQLVAREQEITAVQARMQasyrEHVKEVQQLQGKIRTLQEQLEngpntqlaRLQQENSI 804
Cdd:TIGR02168 733 KDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLE----EAEEELAEAEAEIEELEAQIE--------QLKEELKA 800
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 805 LRDALNQATSQVeSKQNAELAKLRQELSKVSKELVEKSEAVRQDEQQRKALEAKAAAFEKQVLQLQASHRESEEALQKRL 884
Cdd:TIGR02168 801 LREALDELRAEL-TLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALL 879
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 885 DEVSrelchtqSSHASLRADAEKAQEQQQQMAELHSKLQSSEAEVRSKCEELSGLHGQLQEARAENSQLTERIRSIEALL 964
Cdd:TIGR02168 880 NERA-------SLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLT 952
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 1475928828 965 EAGQARDAQDVQASQAEADQQQTRLKELESQVSGLEKEAIELREAVEQ 1012
Cdd:TIGR02168 953 LEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKE 1000
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
767-1395 |
6.99e-10 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 64.09 E-value: 6.99e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 767 REHVKEVQQLQGKIRTLQEQLENgPNTQLARLQQENSILRDALNQATSQVESKQnAELAKLRQELSKVSKELVEKS---- 842
Cdd:pfam12128 230 IQAIAGIMKIRPEFTKLQQEFNT-LESAELRLSHLHFGYKSDETLIASRQEERQ-ETSAELNQLLRTLDDQWKEKRdeln 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 843 -------EAVRQDEQQRKALEAKAAAFEKQVLQLQASHRESEEALQKRLDEVSRELCHTQSSHASLRAdaekaqeqqqqm 915
Cdd:pfam12128 308 gelsaadAAVAKDRSELEALEDQHGAFLDADIETAAADQEQLPSWQSELENLEERLKALTGKHQDVTA------------ 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 916 aelhsKLQSSEAEVRSKC-EELSGLHGQLQEARAENSQLTErirSIEALLEAGQARDAQDVQASQAEADQQQTRLKELES 994
Cdd:pfam12128 376 -----KYNRRRSKIKEQNnRDIAGIKDKLAKIREARDRQLA---VAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLG 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 995 QVSGLEKEAIELREAVEQQKVkNNDLREKNWKAMEALATAEQACKEKLLSLTQAKEESEKQLCLIEAQTMEALLALLPEL 1074
Cdd:pfam12128 448 ELKLRLNQATATPELLLQLEN-FDERIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELE 526
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1075 SVLAQQNYT----------EWLQDL-KEKGPTLLK----HPPAPAEPSSDLAS----KLR-EAEETQSTLQAEcDQYRSI 1134
Cdd:pfam12128 527 LQLFPQAGTllhflrkeapDWEQSIgKVISPELLHrtdlDPEVWDGSVGGELNlygvKLDlKRIDVPEWAASE-EELRER 605
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1135 LAETEGML---RDLQKSVEEEEQVWRAKVGAAEEELQKSRVTVKHLEEIVEKLKGELESsDQVRehtshLEAELEKHMAA 1211
Cdd:pfam12128 606 LDKAEEALqsaREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQS-EKDK-----KNKALAERKDS 679
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1212 ASAECQNYAKEvagLRQLLLESQSQLDAAKSEAQKQSDELALVRQQLSEMKShVEDGDIAGAPASSPEAPPAEQDpvQLK 1291
Cdd:pfam12128 680 ANERLNSLEAQ---LKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALD-AQLALLKAAIAARRSGAKAELK--ALE 753
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1292 TQLEWTEAILEDEQTQRQKLTAEFEEAQTSACRL-QEELEKLRTAGPLESSETEEASQLKERLEKEKKLTSDLGRAATRL 1370
Cdd:pfam12128 754 TWYKRDLASLGVDPDVIAKLKREIRTLERKIERIaVRRQEVLRYFDWYQETWLQRRPRLATQLSNIERAISELQQQLARL 833
|
650 660
....*....|....*....|....*
gi 1475928828 1371 QELLKTTQEQLAREKDTVKKLQEQL 1395
Cdd:pfam12128 834 IADTKLRRAKLEMERKASEKQQVRL 858
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
752-1205 |
1.14e-09 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 63.14 E-value: 1.14e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 752 EQEITAVQARMQA-----SYREHVKEVQQLQGKIRTLQEQLENGPNT------QLARLQQENSILRDALNQ--ATSQVES 818
Cdd:PRK02224 227 EQREQARETRDEAdevleEHEERREELETLEAEIEDLRETIAETEREreelaeEVRDLRERLEELEEERDDllAEAGLDD 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 819 KQNAELAKLRQELSKVSKELVEKSEAVRQDeQQRKALEAKAAAFEKQVLQLQASH-RESEEALQKRLDEVSRELCHTQSS 897
Cdd:PRK02224 307 ADAEAVEARREELEDRDEELRDRLEECRVA-AQAHNEEAESLREDADDLEERAEElREEAAELESELEEAREAVEDRREE 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 898 HASLRADAEKAQEQQQQMAELHSKLQSSEAEVRskcEELSGLHGQLQEARAENSQLTERIRSIEALLEAGQARD-AQDVQ 976
Cdd:PRK02224 386 IEELEEEIEELRERFGDAPVDLGNAEDFLEELR---EERDELREREAELEATLRTARERVEEAEALLEAGKCPEcGQPVE 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 977 ASQ-----AEADQQ----QTRLKELESQVSGLEKEAIELREAVEQQKvKNNDLREKNWKAMEALATAEQACKEKLLSLTQ 1047
Cdd:PRK02224 463 GSPhvetiEEDRERveelEAELEDLEEEVEEVEERLERAEDLVEAED-RIERLEERREDLEELIAERRETIEEKRERAEE 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1048 -------------------AKEESEKQLCLIEAQTMEALLALLPEL---------SVLAQQNYTEWLQDLKEKGPTLlkh 1099
Cdd:PRK02224 542 lreraaeleaeaeekreaaAEAEEEAEEAREEVAELNSKLAELKERieslerirtLLAAIADAEDEIERLREKREAL--- 618
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1100 ppapAEPSSDLASKLREAEETQSTLQAECDQYR------------SILAETEGMLRDLqksvEEEEQVWRAKVGAAE--- 1164
Cdd:PRK02224 619 ----AELNDERRERLAEKRERKRELEAEFDEARieearedkeraeEYLEQVEEKLDEL----REERDDLQAEIGAVEnel 690
|
490 500 510 520
....*....|....*....|....*....|....*....|.
gi 1475928828 1165 EELQKSRVTVKHLEEIVEKLKGELESSDQVREHTSHLEAEL 1205
Cdd:PRK02224 691 EELEELRERREALENRVEALEALYDEAEELESMYGDLRAEL 731
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
764-1037 |
2.71e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 62.01 E-value: 2.71e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 764 ASYREHVKEVQQLQGKIRTLQEQLEnGPNTQLARLQQENSILRDALNQATSQVESKQNAELAKLRQELSKVSKELVEKSE 843
Cdd:TIGR02169 230 KEKEALERQKEAIERQLASLEEELE-KLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLER 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 844 AVRQDEQQRKALEAKAAAFEKQVLQLQASHRESEEAL---QKRLDEVSRELCHTQSSHASLRADAEKAQEQQQQMAELHS 920
Cdd:TIGR02169 309 SIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIeeeRKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELK 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 921 KLQSSEAEVRSKCEELSGLHGQLQEARAENSQLTERIRSIEALLEAGQARDAQDVQASQAEADQQQTRLKELESQVSGLE 1000
Cdd:TIGR02169 389 DYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYE 468
|
250 260 270
....*....|....*....|....*....|....*..
gi 1475928828 1001 KEAIELREavEQQKVkNNDLREKNWKAMEALATAEQA 1037
Cdd:TIGR02169 469 QELYDLKE--EYDRV-EKELSKLQRELAEAEAQARAS 502
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
345-1055 |
6.09e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 60.93 E-value: 6.09e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 345 AQNQGKKAEGAQNQGKKAEGAQnqgKKAEGAQNQGKKAEGAQNQGKKVEGAQnQGKKAEGAQ--NQGKKAEGAQNQ--GK 420
Cdd:PTZ00121 1083 AKEDNRADEATEEAFGKAEEAK---KTETGKAEEARKAEEAKKKAEDARKAE-EARKAEDARkaEEARKAEDAKRVeiAR 1158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 421 KAEGAQ--NQGKKAEGAQ--NQGKKAEGAQ--NQGKKAEGAQnQGKKAEGAQNQGKKVEGAQNQGKKAEGAQNQGKKAEG 494
Cdd:PTZ00121 1159 KAEDARkaEEARKAEDAKkaEAARKAEEVRkaEELRKAEDAR-KAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKK 1237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 495 AQNQGKKAEGAQN--QGQKGEGAQNQGKKTEGAQGKKAE-RSPNQGKKGEgapiQGKKADSV--ANQGTKVEGITNQGKK 569
Cdd:PTZ00121 1238 DAEEAKKAEEERNneEIRKFEEARMAHFARRQAAIKAEEaRKADELKKAE----EKKKADEAkkAEEKKKADEAKKKAEE 1313
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 570 AEGSPSEGKKAEgspNQGKKADAAANQGKKTESASVQGRNTDVAQSPEAPKQEAPAKKKSGSKKKGEPGPPDAdgplylp 649
Cdd:PTZ00121 1314 AKKADEAKKKAE---EAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAA------- 1383
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 650 yktlvSTVGSMVFNEGEAQRLIEILSEKAgiiqDTWHKATQKGDPVAILKRQLEEKEKllATEQEDAAVAKSKLRELNKE 729
Cdd:PTZ00121 1384 -----KKKAEEKKKADEAKKKAEEDKKKA----DELKKAAAAKKKADEAKKKAEEKKK--ADEAKKKAEEAKKADEAKKK 1452
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 730 MAAEKAKAAAGEAKVKKQlVAREQEITAVQARMQASYREHVKEVQQLQGKIRTLQEQLENGPNTQLARLQQENSILRDAl 809
Cdd:PTZ00121 1453 AEEAKKAEEAKKKAEEAK-KADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKA- 1530
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 810 nqatsqvESKQNAELAKLRQELSKVskELVEKSEAVRQDEQQRKALEAKAAAFEKQVLQLQAshRESEEALQKRLDEVSR 889
Cdd:PTZ00121 1531 -------EEAKKADEAKKAEEKKKA--DELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKA--EEAKKAEEARIEEVMK 1599
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 890 ELCHTQSSHAslradaekaqeqqqqMAELHSKLQSSEAEVRSKCEELSGLHGQLQEARAENSQLTERIRSIEALLEAGQA 969
Cdd:PTZ00121 1600 LYEEEKKMKA---------------EEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAA 1664
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 970 RDAQDVQASQAEADQQQTRLKELESQVSGLEKEAIELREAVEQQKVKNNDLREKnwkamEALATAEQACKEKLLSLTQAK 1049
Cdd:PTZ00121 1665 EEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKA-----EELKKAEEENKIKAEEAKKEA 1739
|
....*.
gi 1475928828 1050 EESEKQ 1055
Cdd:PTZ00121 1740 EEDKKK 1745
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
815-1406 |
2.10e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 59.38 E-value: 2.10e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 815 QVESKQNAELAKLRQELSKVSK----ELVEKSEAVRQDEQQRKALEAKAAAFEKQVLQLQASHRESEEALQKRLDEVSRE 890
Cdd:PTZ00121 1177 KAEAARKAEEVRKAEELRKAEDarkaEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRK 1256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 891 -----LCHTQSSHASLRADAEKAQEQQQQMAELHSKLQSSEAEVRSKCEELSGLHGQLQEARAENSQLTERIRSIEALLE 965
Cdd:PTZ00121 1257 feearMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKK 1336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 966 AGQARDAQDvQASQAEADQQQTRLKELESQVSGLEKEAIELREAVEQQKVKNNDLReknwKAMEALATAEQAcKEKLLSL 1045
Cdd:PTZ00121 1337 KAEEAKKAA-EAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKK----KADEAKKKAEED-KKKADEL 1410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1046 TQAKEESEKQlclIEAQTMEALLALLPELSVLAQQNYTEwlQDLKEKGPTLLKhppapAEPSSDLASKLREAEETQSTLQ 1125
Cdd:PTZ00121 1411 KKAAAAKKKA---DEAKKKAEEKKKADEAKKKAEEAKKA--DEAKKKAEEAKK-----AEEAKKKAEEAKKADEAKKKAE 1480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1126 A--ECDQYRSILAETEGMLRDLQKSVEEE---EQVWRAKVGAAEEELQKSRVTVK--HLEEIVEKLKG-------ELESS 1191
Cdd:PTZ00121 1481 EakKADEAKKKAEEAKKKADEAKKAAEAKkkaDEAKKAEEAKKADEAKKAEEAKKadEAKKAEEKKKAdelkkaeELKKA 1560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1192 DQVREHTSHLEAELEKHMAAASAECQNYAKEVAGLRQLLLESQSQldAAKSEAQKQSDELALVRQQL---SEMKSHVEDG 1268
Cdd:PTZ00121 1561 EEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEK--KMKAEEAKKAEEAKIKAEELkkaEEEKKKVEQL 1638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1269 DIAGAPA--SSPEAPPAEQDPVQLKTQLEWTEailEDEQTQRQKLTAEFEEAQTSACRLQEELEKLRTAGPLESSETEE- 1345
Cdd:PTZ00121 1639 KKKEAEEkkKAEELKKAEEENKIKAAEEAKKA---EEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEk 1715
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1475928828 1346 --ASQLKERLEKEKKLTSDLGRAAtrlqELLKTTQEQLAREKDTVKKLQ----EQLEKAEDGSSSKE 1406
Cdd:PTZ00121 1716 kkAEELKKAEEENKIKAEEAKKEA----EEDKKKAEEAKKDEEEKKKIAhlkkEEEKKAEEIRKEKE 1778
|
|
| 2A1904 |
TIGR00927 |
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
252-523 |
2.62e-08 |
|
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 58.85 E-value: 2.62e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 252 AEGTPNQGKKAEgAQNQGkkvDTTPNQGKKVEGAPtqGRKAEGAQNQAKKVEGAQNQGK-KAEGAQNQGKKGEGAQNQGK 330
Cdd:TIGR00927 626 ALGDLSKGDVAE-AEHTG---ERTGEEGERPTEAE--GENGEESGGEAEQEGETETKGEnESEGEIPAERKGEQEGEGEI 699
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 331 KAEGAQNQGKKAEGAQNQGkkaEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKkVEGAQNQGKKAEGAQNQGK 410
Cdd:TIGR00927 700 EAKEADHKGETEAEEVEHE---GETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVE-TEGDRKETEHEGETEAEGK 775
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 411 KAEGaQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKVEGAQNQGKKAEGaqNQGK 490
Cdd:TIGR00927 776 EDED-EGEIQAGEDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQD--EKGV 852
|
250 260 270
....*....|....*....|....*....|...
gi 1475928828 491 KAEGAQNQGKKAEGAQNQGQKGEGAQNQGKKTE 523
Cdd:TIGR00927 853 DGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEE 885
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
811-1400 |
5.95e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 57.38 E-value: 5.95e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 811 QATSQVESK---QNAELAKLRQELSKVSKELVEKSEAVRQDEQQRKALEA---KAAAFEKQVLQLQASHRESEE---ALQ 881
Cdd:PRK03918 186 KRTENIEELikeKEKELEEVLREINEISSELPELREELEKLEKEVKELEElkeEIEELEKELESLEGSKRKLEEkirELE 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 882 KRLDEVSRELchtqsshaslradaekaqeqqqqmaelhSKLQSSEAEVrskcEELSGLHGQLQEARAENSQLTERIRSIE 961
Cdd:PRK03918 266 ERIEELKKEI----------------------------EELEEKVKEL----KELKEKAEEYIKLSEFYEEYLDELREIE 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 962 ALLEAGQARdAQDVQASQAEADQQQTRLKELESQVSGLEKEAIELREAVEQ-QKVKNNDLREKNWKAMEALATAEQAcKE 1040
Cdd:PRK03918 314 KRLSRLEEE-INGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELyEEAKAKKEELERLKKRLTGLTPEKL-EK 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1041 KLLSLTQAKEESEKQLCLIEAQTMEALLALLPELSVLaqqnytEWLQDLKEKGPTllkhppAPAEPSSDlasklrEAEET 1120
Cdd:PRK03918 392 ELEELEKAKEEIEEEISKITARIGELKKEIKELKKAI------EELKKAKGKCPV------CGRELTEE------HRKEL 453
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1121 QSTLQAECDQYRSILAETEGMLRDLQKSVEEEEqvwraKVGAAEEELQKSRVTVKHLEEIVEKLKG-ELESSDQVREHTS 1199
Cdd:PRK03918 454 LEEYTAELKRIEKELKEIEEKERKLRKELRELE-----KVLKKESELIKLKELAEQLKELEEKLKKyNLEELEKKAEEYE 528
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1200 HLEAELEKhmaaASAECQNYAKEVAGLRQLllesQSQLDAAKSEAQKQSDELALVRQQLSEMK-SHVEDGDiagapASSP 1278
Cdd:PRK03918 529 KLKEKLIK----LKGEIKSLKKELEKLEEL----KKKLAELEKKLDELEEELAELLKELEELGfESVEELE-----ERLK 595
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1279 EAPPAEQDPVQLK---TQLEWTEAILEDEQTQRQKLTAEFEEAQTSACRLQEELEKLRTAGPLEssETEEASQLKERLEK 1355
Cdd:PRK03918 596 ELEPFYNEYLELKdaeKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEE--EYEELREEYLELSR 673
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|..
gi 1475928828 1356 E-KKLTSDLGRAATRLQEL------LKTTQEQLAREKDTVKKLQEQLEKAED 1400
Cdd:PRK03918 674 ElAGLRAELEELEKRREEIkktlekLKEELEEREKAKKELEKLEKALERVEE 725
|
|
| 2A1904 |
TIGR00927 |
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
221-473 |
7.18e-08 |
|
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 57.31 E-value: 7.18e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 221 KAEGTPNQGKKTEGTPnqGKKAEGTPNQGKKAEGTPNQGKKAEGAQNQGKKVDTTPNQGK-KVEGAPTQGRKAEGaqnQA 299
Cdd:TIGR00927 641 TGERTGEEGERPTEAE--GENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEiEAKEADHKGETEAE---EV 715
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 300 KKVEGAQNQGKKAEGAQNQGKKGEGAQNQGK-KAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGkkaEGAQNQ 378
Cdd:TIGR00927 716 EHEGETEAEGTEDEGEIETGEEGEEVEDEGEgEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAG---EDGEMK 792
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 379 GKKAEGAQNQGKKVEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGaqNQGKKAEGAQNQGKKAEGAQNQ 458
Cdd:TIGR00927 793 GDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQD--EKGVDGGGGSDGGDSEEEEEEE 870
|
250
....*....|....*
gi 1475928828 459 GKKAEGAQNQGKKVE 473
Cdd:TIGR00927 871 EEEEEEEEEEEEEEE 885
|
|
| 2A1904 |
TIGR00927 |
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
372-650 |
1.14e-07 |
|
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 56.54 E-value: 1.14e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 372 AEGAQNQGKKAEgAQNQGKKVEGAQNQGKKAEGAQNQGKKAEgAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKK 451
Cdd:TIGR00927 626 ALGDLSKGDVAE-AEHTGERTGEEGERPTEAEGENGEESGGE-AEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKE 703
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 452 AEgaqnqgKKAEGAQNQGKKVEGAQNQGKKAEG-AQNQGKKAEGAQNQGKKAEGAQNQGQKGEGAQNQGKKTEGAQGKKA 530
Cdd:TIGR00927 704 AD------HKGETEAEEVEHEGETEAEGTEDEGeIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKED 777
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 531 ERSpNQGKKGEGAPIQGkkaDSVANQGTKVEGITNQGKKAEGSPSEGKKAEGSPNQGKKADA---AANQG--KKTESASV 605
Cdd:TIGR00927 778 EDE-GEIQAGEDGEMKG---DEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQelnAENQGeaKQDEKGVD 853
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 1475928828 606 QGRNTDVAQSPEAPKQEAPAKKKSGSKKKGEPGPPDADGPLYLPY 650
Cdd:TIGR00927 854 GGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENEEPLSLEW 898
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
920-1402 |
2.90e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 55.43 E-value: 2.90e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 920 SKLQSSEAEVRSKCE--ELSGLHGQLQEARAENSQLTERIRSIEALLEAGQAR--DAQDVQASQAEADQQQTRLK----E 991
Cdd:PRK02224 183 SDQRGSLDQLKAQIEekEEKDLHERLNGLESELAELDEEIERYEEQREQARETrdEADEVLEEHEERREELETLEaeieD 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 992 LESQVSGLEKEAIELREAVEQQKVKNNDLREKNwkaMEALATAEqackekllsLTQAKEESekqlclIEAQTMEALLALL 1071
Cdd:PRK02224 263 LRETIAETEREREELAEEVRDLRERLEELEEER---DDLLAEAG---------LDDADAEA------VEARREELEDRDE 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1072 PELSVLAQQNYTewLQDLKEKGPTLlkhppapAEPSSDLASKLREAEETQSTLQAECDQYRSILAETEGMLRDLQKSVEE 1151
Cdd:PRK02224 325 ELRDRLEECRVA--AQAHNEEAESL-------REDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1152 EeqvwRAKVGAAEEELQKSRvtvKHLEEIVEKLkgelessDQVREHTSHLEAELekhmaaasaecQNYAKEVAGLRQLLL 1231
Cdd:PRK02224 396 L----RERFGDAPVDLGNAE---DFLEELREER-------DELREREAELEATL-----------RTARERVEEAEALLE 450
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1232 ESQ--------------SQLDAAKSEAQKQSDELALVRQQLSEMKSHVEDGDIAGAPASSPE-----APPAEQDPVQLKT 1292
Cdd:PRK02224 451 AGKcpecgqpvegsphvETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIErleerREDLEELIAERRE 530
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1293 QLEWTEAILEDEQTQRQKLTAEFEEAQTSACRLQEELEKLR-TAGPLESSETEEASQLK--ERLEKEKKLTSDLGRAATR 1369
Cdd:PRK02224 531 TIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAReEVAELNSKLAELKERIEslERIRTLLAAIADAEDEIER 610
|
490 500 510
....*....|....*....|....*....|....*.
gi 1475928828 1370 LQELLKTTQEQLAREKDTVKKLQE---QLEKAEDGS 1402
Cdd:PRK02224 611 LREKREALAELNDERRERLAEKRErkrELEAEFDEA 646
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
693-1359 |
2.93e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.46 E-value: 2.93e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 693 DPVAILKRQLEEKEKLLATEQEDAAVAKSKLRELnkemAAEKAKAAAGEAKVKKQLVAREQEITAVQARMQ---ASYREH 769
Cdd:TIGR02169 308 RSIAEKERELEDAEERLAKLEAEIDKLLAEIEEL----EREIEEERKRRDKLTEEYAELKEELEDLRAELEevdKEFAET 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 770 VKEVQQLQGKIRTLQEQLENgpntqlarLQQENSILRDALNQATSQVEsKQNAELAKLRQELSKVSKELVEKSEAVRQDE 849
Cdd:TIGR02169 384 RDELKDYREKLEKLKREINE--------LKRELDRLQEELQRLSEELA-DLNAAIAGIEAKINELEEEKEDKALEIKKQE 454
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 850 QQRKALEAKAAAFEKQVLQLQASHRESEE---ALQKRLDEVSRELCHTQSSHASLRADAEKAQEQQQQMAELHSKLQSSE 926
Cdd:TIGR02169 455 WKLEQLAADLSKYEQELYDLKEEYDRVEKelsKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVG 534
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 927 AEVRSKCEELSGlhGQLQEARAENSQLTE--------------------RIRSIEALLEAGQARDAQDVQASQAEADQQ- 985
Cdd:TIGR02169 535 ERYATAIEVAAG--NRLNNVVVEDDAVAKeaiellkrrkagratflplnKMRDERRDLSILSEDGVIGFAVDLVEFDPKy 612
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 986 -------------------------QTRLKELESQV---SG------LEKEAIELREAVEQQKVKNNDLREKNWKAMEAL 1031
Cdd:TIGR02169 613 epafkyvfgdtlvvedieaarrlmgKYRMVTLEGELfekSGamtggsRAPRGGILFSRSEPAELQRLRERLEGLKRELSS 692
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1032 ATAEQACKEKLL-SLTQAKEESEKQLCLIEAQTMEALLALLPELSVLAQ-QNYTEWLQDLKEKGPTLLKHppapaepssd 1109
Cdd:TIGR02169 693 LQSELRRIENRLdELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEElEEDLSSLEQEIENVKSELKE---------- 762
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1110 LASKLREAEETQSTLQAEC-DQYRSILAETEGMLRDLQKSVEEEEQVWRAKVGAAEEELQKS-------RVTVKHLEEIV 1181
Cdd:TIGR02169 763 LEARIEELEEDLHKLEEALnDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLtlekeylEKEIQELQEQR 842
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1182 EKLKGELESSDQVREHTSHLEAELEKHMAAASAECQNYAKEVAGLRQLLLESQSQLDAAKSEAQKQSDELALVRQQLSEM 1261
Cdd:TIGR02169 843 IDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSEL 922
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1262 KSHV-----EDGDIAGAPASSPEAPPAEQDPVQLKTQLEWTEAILEDEQTQRQKLTAEFEEAQTSACRLQEELEKLrtag 1336
Cdd:TIGR02169 923 KAKLealeeELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKL---- 998
|
730 740
....*....|....*....|...
gi 1475928828 1337 plesseTEEASQLKERLEKEKKL 1359
Cdd:TIGR02169 999 ------EEERKAILERIEEYEKK 1015
|
|
| 2A1904 |
TIGR00927 |
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
287-541 |
3.86e-07 |
|
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 55.00 E-value: 3.86e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 287 TQGRKAEgAQNQAKKVEGAQNQGKKAEGaQNQGKKGEGAQNQGKKAEGAQNQGKKAEGAQNQGK-------KAEGAQNQG 359
Cdd:TIGR00927 631 SKGDVAE-AEHTGERTGEEGERPTEAEG-ENGEESGGEAEQEGETETKGENESEGEIPAERKGEqegegeiEAKEADHKG 708
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 360 KKAEGAQNQGkkaEGAQNQGKKAEG-AQNQGKKVEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQ 438
Cdd:TIGR00927 709 ETEAEEVEHE---GETEAEGTEDEGeIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQA 785
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 439 GkkaEGAQNQGKKAEGAQNQGKKAEGAQNQGKKVEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGaqNQGQKGEGAQNQ 518
Cdd:TIGR00927 786 G---EDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQD--EKGVDGGGGSDG 860
|
250 260
....*....|....*....|...
gi 1475928828 519 GKKTEGAQGKKAERSPNQGKKGE 541
Cdd:TIGR00927 861 GDSEEEEEEEEEEEEEEEEEEEE 883
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1134-1398 |
5.83e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.29 E-value: 5.83e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1134 ILAETEGMLRDLQKSVEEEEQ--------------VWRAKVGAAEEELQKSRVTVKHLEEIVEKLKGELESSDQVREHTS 1199
Cdd:TIGR02168 194 ILNELERQLKSLERQAEKAERykelkaelrelelaLLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELR 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1200 HLEAELEKHMAAASAECQNYAKEVAGL--------------RQLLLESQSQLDAAKSEAQKQSDELALVRQQLSEMKSHV 1265
Cdd:TIGR02168 274 LEVSELEEEIEELQKELYALANEISRLeqqkqilrerlanlERQLEELEAQLEELESKLDELAEELAELEEKLEELKEEL 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1266 EDGDIAGApASSPEAPPAEQDPVQLKTQLEWTEAILEDEQTQRQKLTAEFEEAQTSACRLQEELEKLRTAGPLESSETEE 1345
Cdd:TIGR02168 354 ESLEAELE-ELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEE 432
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 1475928828 1346 A--SQLKERLEKEKKLTSDLGRAATRLQELLKTTQEQLAREKDTVKKLQEQLEKA 1398
Cdd:TIGR02168 433 AelKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQL 487
|
|
| 2A1904 |
TIGR00927 |
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
241-483 |
8.71e-07 |
|
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 53.85 E-value: 8.71e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 241 KAEGTPNQGKKAEGTPnqGKKAEGAQNQGKKVDTTPNQGK-KVEGAPTQGRKAEGAQNQAKKVEGAQNQGKKAEGaqnQG 319
Cdd:TIGR00927 641 TGERTGEEGERPTEAE--GENGEESGGEAEQEGETETKGEnESEGEIPAERKGEQEGEGEIEAKEADHKGETEAE---EV 715
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 320 KKGEGAQNQGKKAEG-AQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKVEGAQNQ 398
Cdd:TIGR00927 716 EHEGETEAEGTEDEGeIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDE 795
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 399 GK----KAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAE---GAQNQGKKAEGaqNQGKKAEGAQNQGKKAEGAQNQGKK 471
Cdd:TIGR00927 796 GAegkvEHEGETEAGEKDEHEGQSETQADDTEVKDETGEqelNAENQGEAKQD--EKGVDGGGGSDGGDSEEEEEEEEEE 873
|
250
....*....|..
gi 1475928828 472 VEGAQNQGKKAE 483
Cdd:TIGR00927 874 EEEEEEEEEEEE 885
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
921-1385 |
2.43e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 52.08 E-value: 2.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 921 KLQSSEAEVRSKCEELSGLHGQLQEARAENSQLTERIRSIEALLEAgqARDAQDVQASQAEADQQQTRLKELESQVSGLE 1000
Cdd:COG4717 82 EAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQL--LPLYQELEALEAELAELPERLEELEERLEELR 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1001 KEAIELREAVEQQKVKNNDLREKNWKAMEALATAEQACKEKLLSLTQAKEESEKQLCLIEAQTMEALLALLPELSVLAQQ 1080
Cdd:COG4717 160 ELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAA 239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1081 NYTEWLQDlkekgptllkhppapAEPSSDLASKLREAEETQSTLQAECDQYRSILAETEGMLRDLQKSVEEEEQVWRAKV 1160
Cdd:COG4717 240 ALEERLKE---------------ARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEA 304
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1161 GAAEEELQKSRVTVKHLEEIVEKLKGELESS-----DQVREHTSHLEAELEKHMAAASAECQNYAKEvagLRQLLLESQS 1235
Cdd:COG4717 305 EELQALPALEELEEEELEELLAALGLPPDLSpeellELLDRIEELQELLREAEELEEELQLEELEQE---IAALLAEAGV 381
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1236 QLDAAKSEAQKQSDELALVRQQLSEMKSHVEdgdiagAPASSPEAPPAEQDPVQLKTQLEwteaileDEQTQRQKLTAEF 1315
Cdd:COG4717 382 EDEEELRAALEQAEEYQELKEELEELEEQLE------ELLGELEELLEALDEEELEEELE-------ELEEELEELEEEL 448
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1316 EEAQTSACRLQEELEKLRTAGPLessetEEASQLKERLEKEKKLTSDLGRAATRLQELLKTTQEQLAREK 1385
Cdd:COG4717 449 EELREELAELEAELEQLEEDGEL-----AELLQELEELKAELRELAEEWAALKLALELLEEAREEYREER 513
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
343-542 |
2.53e-06 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 52.21 E-value: 2.53e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 343 EGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKVE-GAQNQGKKAEGAQNQGKKAEGAQNQGKK 421
Cdd:PRK12678 56 KEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPaARAAAAAAAEAASAPEAAQARERRERGE 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 422 AEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKVEGAQ-NQGKKAEGAQNQGKKAEGAQNQGK 500
Cdd:PRK12678 136 AARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERgRREERGRDGDDRDRRDRREQGDRR 215
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1475928828 501 KAEGAQNQGQKGEGAQNQGKKTEGAQGKKAERSPNQGKKGEG 542
Cdd:PRK12678 216 EERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEG 257
|
|
| Rib_recp_KP_reg |
pfam05104 |
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards ... |
1228-1360 |
5.43e-06 |
|
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards the C-terminus of the transmembrane domain. The function is unclear.
Pssm-ID: 461548 [Multi-domain] Cd Length: 140 Bit Score: 47.42 E-value: 5.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1228 QLLLESQSQLDAAKSEAQKQSDELALVRQQLSEMKSHVEDGDIAGapasSPEAPPAEQDPVQLKTQLEWTEAILEDEQT- 1306
Cdd:pfam05104 8 EALAKQRRELKKTPTEKEKKKKEKKKEKKKKSKKKEEKPNGKLPE----SEQADESEEEPREFKTPDEAPSAALEPEPVp 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1475928828 1307 QRQKLTAEFEEAQTS---ACRLQEELEKLRTAGPLESSETEEASQLKERLEKEKKLT 1360
Cdd:pfam05104 84 TPVPAPVEPEPAPPSespAPSPKEKKKKEKKSAKVEPAETPEAVQPKPALEKEEPPA 140
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
934-1403 |
8.76e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.68 E-value: 8.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 934 EELSGLHGQLQEARaensqltERIRSIEALLEAGQARDAQDVQASQAEADQQQTRLKELESQVSGLEKEAIELREAVEQQ 1013
Cdd:COG4913 235 DDLERAHEALEDAR-------EQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARL 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1014 KvknndlreknwKAMEALATAEQACKEKLLSLTQAKEESE-KQLCLIEAQtmEALLALLPELSVLAQQNYTEWLQDLKEK 1092
Cdd:COG4913 308 E-----------AELERLEARLDALREELDELEAQIRGNGgDRLEQLERE--IERLERELEERERRRARLEALLAALGLP 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1093 GPT----LLKHPPAPAEPSSDLASKLREAEETQSTLQAECDQYRSILAETEGMLRDLQKS-------------------- 1148
Cdd:COG4913 375 LPAsaeeFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRksniparllalrdalaealg 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1149 --------------VEEEEQVWRakvGAAEEEL-------------------------QKSRVTVKHLEEIVEKLKGELE 1189
Cdd:COG4913 455 ldeaelpfvgelieVRPEEERWR---GAIERVLggfaltllvppehyaaalrwvnrlhLRGRLVYERVRTGLPDPERPRL 531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1190 SSD------QVREH--TSHLEAELEKHMA---------------AASAECQNYAKEVAG--------LRQLLL--ESQSQ 1236
Cdd:COG4913 532 DPDslagklDFKPHpfRAWLEAELGRRFDyvcvdspeelrrhprAITRAGQVKGNGTRHekddrrriRSRYVLgfDNRAK 611
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1237 LDAAKSEAQKQSDELALVRQQLSEMKSHVEdgdiagapasspeappaeqdpvQLKTQLEWTEAILEDEQTQRQKLTAEFE 1316
Cdd:COG4913 612 LAALEAELAELEEELAEAEERLEALEAELD----------------------ALQERREALQRLAEYSWDEIDVASAERE 669
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1317 EAQtsacrLQEELEKLRTAGPlesseteEASQLKERLEKEKKLTSDLGRAATRLQELLKTTQEQLAREKDTVKKLQEQLE 1396
Cdd:COG4913 670 IAE-----LEAELERLDASSD-------DLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLE 737
|
....*..
gi 1475928828 1397 KAEDGSS 1403
Cdd:COG4913 738 AAEDLAR 744
|
|
| 2A1904 |
TIGR00927 |
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
332-581 |
8.99e-06 |
|
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 50.38 E-value: 8.99e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 332 AEGAQNQGKKAEgAQNQGKKAEGAQNQGKKAEGAQNQGKKAEgAQNQGKKAEGAQNQGKKVEGAQNQGKKAEGAQNQGKK 411
Cdd:TIGR00927 626 ALGDLSKGDVAE-AEHTGERTGEEGERPTEAEGENGEESGGE-AEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKE 703
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 412 AEgAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQN-QGKKAEGAQNQGKKVEGAQNQGKKAEGAQNQGK 490
Cdd:TIGR00927 704 AD-HKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEaEGKHEVETEGDRKETEHEGETEAEGKEDEDEGE 782
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 491 KAEGAQNQGKKAEGAQNQGQ----KGEGAQNQGKKTEGAQGKKAERSPNQGKKGEGAPIQGKKADSvaNQGTKVEGITNQ 566
Cdd:TIGR00927 783 IQAGEDGEMKGDEGAEGKVEhegeTEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQD--EKGVDGGGGSDG 860
|
250
....*....|....*
gi 1475928828 567 GKKAEGSPSEGKKAE 581
Cdd:TIGR00927 861 GDSEEEEEEEEEEEE 875
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
757-1020 |
9.85e-06 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 50.30 E-value: 9.85e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 757 AVQARMQAsyrehVKEVQQLQGKIRTLQEQLENGPNT--QLARLQQENSILRDALNQATSQVESKQnAELAKL------- 827
Cdd:PRK11281 40 DVQAQLDA-----LNKQKLLEAEDKLVQQDLEQTLALldKIDRQKEETEQLKQQLAQAPAKLRQAQ-AELEALkddndee 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 828 -RQELSKVSKELVEKSEAVRQDEQQRkaLEAKAAAFEKQVLQLQASHRESEEAL---QKRLDEVSRELCHTQSSHASLRA 903
Cdd:PRK11281 114 tRETLSTLSLRQLESRLAQTLDQLQN--AQNDLAEYNSQLVSLQTQPERAQAALyanSQRLQQIRNLLKGGKVGGKALRP 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 904 DAEKaqeqqqqmaelhsKLQSseaevrskceELSGLHGQLQEARAE---NSQLTERIRSIEALLEAGQARDAQDVQASQA 980
Cdd:PRK11281 192 SQRV-------------LLQA----------EQALLNAQNDLQRKSlegNTQLQDLLQKQRDYLTARIQRLEHQLQLLQE 248
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 1475928828 981 EADQQqtRLKELESQVsgleKEAIELREAveqQKVKNNDL 1020
Cdd:PRK11281 249 AINSK--RLTLSEKTV----QEAQSQDEA---ARIQANPL 279
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
806-1018 |
1.55e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 49.63 E-value: 1.55e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 806 RDALNQATSQVEskqnAELAKLRQELSKVSKELVE--KSEAVRQDEQQRKALEAKAAAFEKQVLQLQASHREseeaLQKR 883
Cdd:COG3206 170 REEARKALEFLE----EQLPELRKELEEAEAALEEfrQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAE----AEAR 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 884 LDEVSRELCHTQSSHASLRADAEKaqeqqqqmaelhSKLQSSEAEVRSKCEELSGL----HGQLQEARAENSQLTERIRS 959
Cdd:COG3206 242 LAALRAQLGSGPDALPELLQSPVI------------QQLRAQLAELEAELAELSARytpnHPDVIALRAQIAALRAQLQQ 309
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 960 -IEALLEAGQArdaqDVQASQAEADQQQTRLKELESQVSGLEKEAIELREAVEQQKVKNN 1018
Cdd:COG3206 310 eAQRILASLEA----ELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARE 365
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1112-1400 |
1.59e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.68 E-value: 1.59e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1112 SKLREAEETQSTLQAECDQYRSILAETEGMLRDLQKSVEEEEqvwraKVGAAEEELQKSRVTVkhleeivekLKGELESS 1191
Cdd:TIGR02169 170 RKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAE-----RYQALLKEKREYEGYE---------LLKEKEAL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1192 DQVREHTSHLEAELEKHMAAASAECQNYAKEVAGLRQLLLESQSQLDAAKSEAQKQ--------SDELALVRQQLSEMKS 1263
Cdd:TIGR02169 236 ERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRvkekigelEAEIASLERSIAEKER 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1264 HVEDGDiagapassPEAPPAEQDPVQLKTQLEWTEAILEDEQTQRQKLTAEFEEAQTSACRLQEELEKLRTagplESSET 1343
Cdd:TIGR02169 316 ELEDAE--------ERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDK----EFAET 383
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 1475928828 1344 -EEASQLKERLEKEKKLTSDLGRAATRLQELLKTTQEQLAREKDTVKKLQEQLEKAED 1400
Cdd:TIGR02169 384 rDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEE 441
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
747-1013 |
1.67e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.53 E-value: 1.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 747 QLVAREQEITAVQARMQasyrEHVKEVQQLQGKIRTLQEQLEngpntQLARLQQENSILRDALnQATSQVESKQ------ 820
Cdd:COG4913 611 KLAALEAELAELEEELA----EAEERLEALEAELDALQERRE-----ALQRLAEYSWDEIDVA-SAEREIAELEaelerl 680
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 821 ---NAELAKLRQELSKVSKELVEKSEAVRQDEQQRKALEAKAAAFEKQVlqlqashreseEALQKRLDEVSRELCHTQSS 897
Cdd:COG4913 681 dasSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEEL-----------DELQDRLEAAEDLARLELRA 749
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 898 HASLRADAEKAQEqqqqmaelhsklqsSEAEVRSKceelsgLHGQLQEARAENSQLTERIRSIealLEAGQAR---DAQD 974
Cdd:COG4913 750 LLEERFAAALGDA--------------VERELREN------LEERIDALRARLNRAEEELERA---MRAFNREwpaETAD 806
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 1475928828 975 VQASQAEADQQQTRLKELESqvSGL-EKEAiELREAVEQQ 1013
Cdd:COG4913 807 LDADLESLPEYLALLDRLEE--DGLpEYEE-RFKELLNEN 843
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
701-881 |
1.86e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 49.24 E-value: 1.86e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 701 QLEEKEKLLATEQEDAAVAKSKLRELNKEMAAEKAKAAAGEAKVKKQ-LVAREQEITAVQARMQASYREHVKEVQQLQGK 779
Cdd:COG3206 220 QLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSPVIQqLRAQLAELEAELAELSARYTPNHPDVIALRAQ 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 780 IRTLQEQLENGPNTQLARLQQENSILRdalnqatsQVESKQNAELAKLRQELSKVSkelvekseavrQDEQQRKALEAKA 859
Cdd:COG3206 300 IAALRAQLQQEAQRILASLEAELEALQ--------AREASLQAQLAQLEARLAELP-----------ELEAELRRLEREV 360
|
170 180
....*....|....*....|..
gi 1475928828 860 AAFEKQVLQLQASHRESEEALQ 881
Cdd:COG3206 361 EVARELYESLLQRLEEARLAEA 382
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
695-1261 |
1.94e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 49.20 E-value: 1.94e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 695 VAILKRQLEEKEKLLATEQEDAAVAKSKLRELNKEMAAEKAKAAAGEAKVKKQLVAREQEITAVQARMQASYREHVKEVQ 774
Cdd:TIGR00618 296 AAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQH 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 775 QLQGKIRTLQEQLE-----------------NGPNTQLARLQQENSILRDALNQATSQVESKQNAELakLRQELSKVSKE 837
Cdd:TIGR00618 376 TLTQHIHTLQQQKTtltqklqslckeldilqREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAEL--CAAAITCTAQC 453
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 838 LVEKSEAVRQDEQQRKALEAKAAAFEKQVLQLQASHRESEEALQkRLDEVSRELCHTQSSHASLRADAEKAQEQQQQMAE 917
Cdd:TIGR00618 454 EKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLL-ELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQR 532
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 918 L---HSKLQSSEAEVRSKC----EELSGLHGQLQEARAENSQLTERIRSIEALLEAGQARDAQDVQASQAEADQQQTRLK 990
Cdd:TIGR00618 533 GeqtYAQLETSEEDVYHQLtserKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLAC 612
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 991 ELESQVSGLEKEAIELREAVEQQKVKNNDLREKNWKAMEALATAEQACKEKLLSLTQAKEESEKQLCLIEAQTMEALLAL 1070
Cdd:TIGR00618 613 EQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQL 692
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1071 LPELSVLAQQNytEWLQDLKEKGPTLLKHPPAPAEPSSDLASKLREAEETQSTLQAECDQyrsiLAETEGMLRDLQKSVE 1150
Cdd:TIGR00618 693 TYWKEMLAQCQ--TLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMH----QARTVLKARTEAHFNN 766
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1151 EEEQVWRAKVGAAEEEL-QKSRVTVKHLEEIVEKLKGELEssdQVREHTSHLEAELEKHMAAASAECQNYAKEVAGLRQL 1229
Cdd:TIGR00618 767 NEEVTAALQTGAELSHLaAEIQFFNRLREEDTHLLKTLEA---EIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSAT 843
|
570 580 590
....*....|....*....|....*....|..
gi 1475928828 1230 LLESQSQLDaAKSEAQKQSDELALVRQQLSEM 1261
Cdd:TIGR00618 844 LGEITHQLL-KYEECSKQLAQLTQEQAKIIQL 874
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
1100-1394 |
2.02e-05 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 49.14 E-value: 2.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1100 PPAPAEPSSDL--ASKLREAEETQSTLQAEcdqyrsiLAETEGMLRDLQKSVEEEEQVwRAKVGAAEEELQKSRvtvkhl 1177
Cdd:PRK11281 35 LPTEADVQAQLdaLNKQKLLEAEDKLVQQD-------LEQTLALLDKIDRQKEETEQL-KQQLAQAPAKLRQAQ------ 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1178 EEIvEKLKGELesSDQVREHTSHLE-AELEKHMAAASAECQNYAKEVAGLRQLLLESQSQLD---AAKSEAQKQSDELal 1253
Cdd:PRK11281 101 AEL-EALKDDN--DEETRETLSTLSlRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPEraqAALYANSQRLQQI-- 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1254 vRQQLSemkshveDGDIAGAPASSPE--APPAEQDPVQLKTQLEWTEA----ILED-EQTQRQKLTAEFEEAQTSACRLQ 1326
Cdd:PRK11281 176 -RNLLK-------GGKVGGKALRPSQrvLLQAEQALLNAQNDLQRKSLegntQLQDlLQKQRDYLTARIQRLEHQLQLLQ 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1327 EEL-EKLR-----TAGPLESSETEEASQ----LKERLEKEKKLTSDLGRAATRLQEL----LKTTQeQLAREKDTVKKLQ 1392
Cdd:PRK11281 248 EAInSKRLtlsekTVQEAQSQDEAARIQanplVAQELEINLQLSQRLLKATEKLNTLtqqnLRVKN-WLDRLTQSERNIK 326
|
..
gi 1475928828 1393 EQ 1394
Cdd:PRK11281 327 EQ 328
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
771-1016 |
2.36e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.22 E-value: 2.36e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 771 KEVQQLQGKIRTLQEQLEngpntqlarlqqensilrdalnqatsqvesKQNAELAKLRQELSKVSKELVEKSEAVRQDEQ 850
Cdd:COG4942 27 AELEQLQQEIAELEKELA------------------------------ALKKEEKALLKQLAALERRIAALARRIRALEQ 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 851 QRKALEAKAAAFEKQVLQLQASHRESEEALQKRLDEVSRELCHTQSSHASLRADAEKAQEQQQQMAELHSKLQSSEAEVR 930
Cdd:COG4942 77 ELAALEAELAELEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELR 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 931 SKCEELSGLHGQLQEARAENSQLTERIRSIEALLEAGQARDAQDVQASQAEADQQQTRLKELESQVSGLEKEAIELREAV 1010
Cdd:COG4942 157 ADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEA 236
|
....*.
gi 1475928828 1011 EQQKVK 1016
Cdd:COG4942 237 AAAAER 242
|
|
| 2A1904 |
TIGR00927 |
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
201-443 |
2.61e-05 |
|
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 48.84 E-value: 2.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 201 KAEGTQNQSKKAEGAPnqGRKAEGTPNQGKKTEGTPNQGK-KAEGTPNQGKKAEGTPNQGKKAEGAQNQGkkvDTTPNQG 279
Cdd:TIGR00927 641 TGERTGEEGERPTEAE--GENGEESGGEAEQEGETETKGEnESEGEIPAERKGEQEGEGEIEAKEADHKG---ETEAEEV 715
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 280 KKVEGAPTQGRKAEG-AQNQAKKVEGAQNQGKKAEGAQNQGKKGEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQ 358
Cdd:TIGR00927 716 EHEGETEAEGTEDEGeIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDE 795
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 359 GK----KAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKVE---GAQNQGKKAEGaqNQGKKAEGAQNQGKKAEGAQNQGKK 431
Cdd:TIGR00927 796 GAegkvEHEGETEAGEKDEHEGQSETQADDTEVKDETGEqelNAENQGEAKQD--EKGVDGGGGSDGGDSEEEEEEEEEE 873
|
250
....*....|..
gi 1475928828 432 AEGAQNQGKKAE 443
Cdd:TIGR00927 874 EEEEEEEEEEEE 885
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1003-1365 |
3.15e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.53 E-value: 3.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1003 AIELREAVEQQKVKNNDLREKNWKAMEALATaEQACKEKLLSLTQAKEESEKQLCLIEAQTMEALLALlpelsVLAQ-QN 1081
Cdd:TIGR02169 175 ALEELEEVEENIERLDLIIDEKRQQLERLRR-EREKAERYQALLKEKREYEGYELLKEKEALERQKEA-----IERQlAS 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1082 YTEWLQDLKEKGPTLLKHPPAPAEPSSDLASKLRE-AEETQSTLQAEcdqyrsiLAETEGMLRDLQKSVEEEEQvwraKV 1160
Cdd:TIGR02169 249 LEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDlGEEEQLRVKEK-------IGELEAEIASLERSIAEKER----EL 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1161 GAAEEELQKSRVTVKHLEEIVEKLKGELESSDQVREHTSHLEAELEKHMAAASAECQNYAKEVAGLRQLLLESQSQLDAA 1240
Cdd:TIGR02169 318 EDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKL 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1241 KSE-------AQKQSDELALVRQQLSEMKSHVEDGdIAGAPASSPEAPPAEQDPVQLKTQLEWTEAILEDEQTQRQKLTA 1313
Cdd:TIGR02169 398 KREinelkreLDRLQEELQRLSEELADLNAAIAGI-EAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKE 476
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 1475928828 1314 EFEEAQTSACRLQEELEKLR-TAGPLESSETEEASQ---LKERLEKEKKLTSDLGR 1365
Cdd:TIGR02169 477 EYDRVEKELSKLQRELAEAEaQARASEERVRGGRAVeevLKASIQGVHGTVAQLGS 532
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
747-962 |
4.29e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.09 E-value: 4.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 747 QLVAREQEITAVQARMQAsYREHVKEVQqLQGKIRTLQEQLENGpNTQLARLQQENSILRDALNQATSQVESK------- 819
Cdd:COG3206 183 QLPELRKELEEAEAALEE-FRQKNGLVD-LSEEAKLLLQQLSEL-ESQLAEARAELAEAEARLAALRAQLGSGpdalpel 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 820 -QNAELAKLRQELSKVSKELVEKSEAVRQDEQQRKALEAKAAAFEKQVlqlqashresEEALQKRLDEVSRELCHTQSSH 898
Cdd:COG3206 260 lQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQL----------QQEAQRILASLEAELEALQARE 329
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1475928828 899 ASLRADAEKAQEQQQQMAELHSKLQSSEAEVRSKCEELSGLHGQLQEARAENSQLTERIRSIEA 962
Cdd:COG3206 330 ASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEARLAEALTVGNVRVIDP 393
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
824-1196 |
4.60e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.14 E-value: 4.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 824 LAKLRQELSKVSKElveKSEAVRQDEQQRKALEAKAAAFEKQVLqlqaSHRESEEALQKRLDEVSRELchtqsshaslra 903
Cdd:TIGR02169 193 IDEKRQQLERLRRE---REKAERYQALLKEKREYEGYELLKEKE----ALERQKEAIERQLASLEEEL------------ 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 904 dAEKAQEQQQQMAELHSKLQSSEAEVRSKCEELSGLHGQLQEARAENSQLTERIRSIEALLEAGQARDAQDVQASQAEAD 983
Cdd:TIGR02169 254 -EKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEID 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 984 QQQTRLKELESQVSGLEKEAIELREAVEQQKVKNNDLREKnwkaMEALATAEQACKEKLLSLTQAKEESEKQLCLIEAQT 1063
Cdd:TIGR02169 333 KLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAE----LEEVDKEFAETRDELKDYREKLEKLKREINELKREL 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1064 MEALLALLPELSVLAqqnytewlqDLKEKGPTLLKHPPAPAEPSSDLASKLREAEETQSTLQAECDQYRSILAETEGMLR 1143
Cdd:TIGR02169 409 DRLQEELQRLSEELA---------DLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYD 479
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 1475928828 1144 DLQK---SVEEEEQVWRAKVGAAEEELQKSRVTVKHLEEIVEKLKGELESSDQVRE 1196
Cdd:TIGR02169 480 RVEKelsKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGE 535
|
|
| 2A1904 |
TIGR00927 |
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
171-413 |
5.05e-05 |
|
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 48.07 E-value: 5.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 171 ETAPKEVPMVVVPPVGAKGNTPATGTTQGK-KAEGTQNQSKKAEGAPNQGRKAEGTPNQGKKTEGTPNQGkkaEGTPNQG 249
Cdd:TIGR00927 649 GERPTEAEGENGEESGGEAEQEGETETKGEnESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHE---GETEAEG 725
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 250 KKAEGTPNQGKKAEGAQNQGKkvdtTPNQGKKVEGAPTQGRKAEGAQNQAKKVEGAQNQGK--KAEGAQNQGKKGEGAQN 327
Cdd:TIGR00927 726 TEDEGEIETGEEGEEVEDEGE----GEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEiqAGEDGEMKGDEGAEGKV 801
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 328 QGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGaqNQGKKAEGAQNQGKKVEGAQNQGKKAEGAQN 407
Cdd:TIGR00927 802 EHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQD--EKGVDGGGGSDGGDSEEEEEEEEEEEEEEEE 879
|
....*.
gi 1475928828 408 QGKKAE 413
Cdd:TIGR00927 880 EEEEEE 885
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
820-1037 |
6.63e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.07 E-value: 6.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 820 QNAELAKLRQELSKVSKELVEKSEAVRQDEQQRKALEAKAAAFEKQVLQLQASHRESEE---ALQKRLDEVSRELCHTQS 896
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQelaALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 897 SHASLRADAEKAQEQQQQMAELHSKL----QSSEAEVRSKCEELSGLHGQLQEARAENSQLTERIRSIEALLEAGQARDA 972
Cdd:COG4942 98 ELEAQKEELAELLRALYRLGRQPPLAlllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELE 177
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1475928828 973 QDVQASQAEADQQQTRLKELESQVSGLEKEAIELREAVEQQKVKNNDLREKNWKAMEALATAEQA 1037
Cdd:COG4942 178 ALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
822-1062 |
7.71e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 47.64 E-value: 7.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 822 AELAKLRQELSKVSKELVEKSEAVRQDEQQRKALEAKAAAFEKqvLQLQASHREsEEALQKRLDEVSRELCHTQSSHASL 901
Cdd:COG3096 836 AELAALRQRRSELERELAQHRAQEQQLRQQLDQLKEQLQLLNK--LLPQANLLA-DETLADRLEELREELDAAQEAQAFI 912
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 902 RADAEKAQEQQQQMAELHSKLQSSEA-------------EVRSKCEELSGL-----HGQLQEA---RAENSQLTERIRsi 960
Cdd:COG3096 913 QQHGKALAQLEPLVAVLQSDPEQFEQlqadylqakeqqrRLKQQIFALSEVvqrrpHFSYEDAvglLGENSDLNEKLR-- 990
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 961 EALLEAGQARDAQDVQASQAEADQQQTrLKELESQVSGLEKEAIELREAVEQQKvknnDLREKNWKAMEALATAE-QACK 1039
Cdd:COG3096 991 ARLEQAEEARREAREQLRQAQAQYSQY-NQVLASLKSSRDAKQQTLQELEQELE----ELGVQADAEAEERARIRrDELH 1065
|
250 260
....*....|....*....|...
gi 1475928828 1040 EKLLSLTQAKEESEKQLCLIEAQ 1062
Cdd:COG3096 1066 EELSQNRSRRSQLEKQLTRCEAE 1088
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1219-1399 |
8.28e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 47.24 E-value: 8.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1219 YAKEVAGLRQLLLESQSQLDAAKSEAQKQSDELALVRQQLSEMKSHVEDGDIAGAPASSPEAPpAEQDPVQLKTQLEWTE 1298
Cdd:COG1196 230 LLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYE-LLAELARLEQDIARLE 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1299 AILEDEQTQRQKLTAEFEEAQTSACRLQEELEKLRTAgpLESSETEEASQLKERLEKEKKLTSDLGRAATRLQELLKTTQ 1378
Cdd:COG1196 309 ERRRELEERLEELEEELAELEEELEELEEELEELEEE--LEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAE 386
|
170 180
....*....|....*....|.
gi 1475928828 1379 EQLAREKDTVKKLQEQLEKAE 1399
Cdd:COG1196 387 ELLEALRAAAELAAQLEELEE 407
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
695-1410 |
9.06e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 47.27 E-value: 9.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 695 VAILKRQLEEKEKLLATEQEDAAVAKSKLRELNKEMAAEKAKAAAGEAKVKKQLVAREQEITAVQARMQASYREHVKEvq 774
Cdd:pfam02463 164 GSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDL-- 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 775 qLQGKIRTLQEQLENgpNTQLARLQQENSILRDALNQATSQVESKQNAELAKLRQELSKVSKELVEKSEAVRQDEQQRKA 854
Cdd:pfam02463 242 -LQELLRDEQEEIES--SKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKE 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 855 LEAKAAAFEKQVLQLQashrESEEALQKRLDEVSRelchtqsshaslradaekAQEQQQQMAELHSKLQSSEAEVRSKCE 934
Cdd:pfam02463 319 SEKEKKKAEKELKKEK----EEIEELEKELKELEI------------------KREAEEEEEEELEKLQEKLEQLEEELL 376
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 935 ELSGLHGQLQEARAENSQLTERIRSIEalleagQARDAQDVQASQAEADQQQTRLKELESQVSGLEKEAIELREAVEQQK 1014
Cdd:pfam02463 377 AKKKLESERLSSAAKLKEEELELKSEE------EKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEK 450
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1015 VKNNDLREKNWKAMEALATAEQACKEKLLSLTQAKEESEKQLCLIEAQTMEALLALLPELSVLAQQNYTEWLQDLKEKGP 1094
Cdd:pfam02463 451 EELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGR 530
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1095 TLLKHPPAPAEpssdLASKLREAEETQSTLQAECDQYRSILAETEGMLRDLQKSVEEEEQVWRAKVGAAEEELQKSRVTV 1174
Cdd:pfam02463 531 LGDLGVAVENY----KVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLA 606
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1175 KHLE---EIVEKLKGELESSDQVREHTSHLEAELEKHMAAASAECQNYAK---EVAGLRQLLLESQSQLDAAKSEAQKQS 1248
Cdd:pfam02463 607 QLDKatlEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEglaEKSEVKASLSELTKELLEIQELQEKAE 686
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1249 DELALVRQQLSEMKSHVEDGDIagapasspeappaEQDPVQLKTQLEWTEAILEDEQTQRQKLTAEFEEAQTSACrLQEE 1328
Cdd:pfam02463 687 SELAKEEILRRQLEIKKKEQRE-------------KEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEE-EEEE 752
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1329 LEKLRTAGPLESSETEEASQLKERLEKEKKLTSDLgrAATRLQELLKTTQEQLAREKDTVKKLQEQLEKAEDGSSSKEGT 1408
Cdd:pfam02463 753 EKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLK--VEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKI 830
|
..
gi 1475928828 1409 SV 1410
Cdd:pfam02463 831 KE 832
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1163-1400 |
1.03e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.85 E-value: 1.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1163 AEEELQKSRVTVKHLEEivekLKGELESSDQVREHTSHLEAELEKHMAAASAECQNYAKEVAGLRQLLLESQSQLDAAKS 1242
Cdd:COG1196 220 EELKELEAELLLLKLRE----LEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1243 EAQKQSDELALVRQQLSEmkshvedgdiagapasspeappAEQDPVQLKTQLEWTEAILEDEQTQRQKLTAEFEEAQtsa 1322
Cdd:COG1196 296 ELARLEQDIARLEERRRE----------------------LEERLEELEEELAELEEELEELEEELEELEEELEEAE--- 350
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1475928828 1323 crlqEELEKLRTA-GPLESSETEEASQLKERLEKEKKLTSDLGRAATRLQELLKTTQEQLAREKDTVKKLQEQLEKAED 1400
Cdd:COG1196 351 ----EELEEAEAElAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEE 425
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
700-891 |
1.13e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.83 E-value: 1.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 700 RQLEEKEKLLATEQEDAAVAKSKLRELNKEMAAEKAKAAAGEAKVKKQLVAREQEITAVQARMQASYREHVKEVQQLQGK 779
Cdd:COG4913 245 EDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREE 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 780 IRTLQEQLENGPNTQLARLQQENSILRDALNQATSQVESKQN-------------AELAKLRQELSKVSKELVEKSEAVR 846
Cdd:COG4913 325 LDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEAllaalglplpasaEEFAALRAEAAALLEALEEELEALE 404
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1475928828 847 QD----EQQRKALEAKAAAFEKQVLQLQASHRESEEALQKRLDEVSREL 891
Cdd:COG4913 405 EAlaeaEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDALAEAL 453
|
|
| dermokine |
cd21118 |
dermokine; Dermokine, also known as epidermis-specific secreted protein SK30/SK89, is a ... |
303-617 |
1.13e-04 |
|
dermokine; Dermokine, also known as epidermis-specific secreted protein SK30/SK89, is a skin-specific glycoprotein that may play a regulatory role in the crosstalk between barrier dysfunction and inflammation, and therefore play a role in inflammatory diseases such as psoriasis. Dermokine is one of the most highly expressed proteins in differentiating keratinocytes, found mainly in the spinous and granular layers of the epidermis, but also in the epithelia of the small intestine, macrophages of the lung, and endothelial cells of the lung. Mouse dermokine has been reported to be encoded by 22 exons, and its expression leads to alpha, beta, and gamma transcripts.
Pssm-ID: 411053 [Multi-domain] Cd Length: 495 Bit Score: 46.53 E-value: 1.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 303 EGAQNQGKKAEGAqnqgkkGEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGaqnqgkKAEGAQNQGKKAEGAQNQGKKA 382
Cdd:cd21118 25 EGTGAGESAGHGL------GDAISHGIGEAVGQGAKEAASSGIQNALGQGHG------EEGGSTLGSRGDVFEHRLGEAA 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 383 EGAQNQGKKVegaqnqGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGkka 462
Cdd:cd21118 93 RSLGNAGNEI------GRQAEDIIRHGVDAVHNSWQGSGGHGAYGSQGGPGVQGHGIPGGTGGPWASGGNYGTNSLG--- 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 463 eGAQNQGKKvEGAQNQGKKAEGAQNQ-GKKAEGAQNQGKKAEGAQNQGQKGEGAQNQGKKTEGAQGKKAERSPNQGKKGE 541
Cdd:cd21118 164 -GSVGQGGN-GGPLNYGTNSQGAVAQpGYGTVRGNNQNSGCTNPPPSGSHESFSNSGGSSSSGSSGSQGSHGSNGQGSSG 241
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1475928828 542 GAPIQGKkadsvanqgtkveGITNQGKKAEGSPSEGKKAEGSPNQGKKADAAAN---QGKKTESASVQGRNTDVAQSPE 617
Cdd:cd21118 242 SSGGQGN-------------GGNNGSSSSNSGNSGGSNGGSSGNSGSGSGGSSSggsNGWGGSSSSGGSGGSGGGNKPE 307
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
693-1397 |
1.19e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 46.89 E-value: 1.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 693 DPVAILKRQLEEKEKLLATEQEDAAVAKSKLRELNKEMAAEKAKAAAGEAKVKKQLVAREQEITAvqarmQASYREHVKE 772
Cdd:pfam02463 314 EKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAK-----KKLESERLSS 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 773 VQQLQGKIRTLQEQLENGPNTQLARLQQENSILRDALNQATSQVESKQ------NAELAKLRQELSKVSKELVEKSEAVR 846
Cdd:pfam02463 389 AAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEesielkQGKLTEEKEELEKQELKLLKDELELK 468
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 847 QDEQQRKALEaKAAAFEKQVLQLQASHRESEEALQKRLDEVSRELCHTQSSHASLRADAEKAQEQQQQMAELHSKLQSS- 925
Cdd:pfam02463 469 KSEDLLKETQ-LVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISt 547
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 926 ---EAEVRSKCEELSGLHGQLQEARAENSQLTERIRSIEALLEAGQARDAQDVQASQAEADQQQTRLKELESQ-VSGLEK 1001
Cdd:pfam02463 548 aviVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKrAKVVEG 627
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1002 EAIELREAVEQQKVKNNDLREKNWKAMEALATAEQACKEKLLSLTQAKEESEKQLCLIEAQTMEALLALLPELSVLAQQN 1081
Cdd:pfam02463 628 ILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQR 707
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1082 YTEWLQDLKEKGPTLLKHPPAPAEPSSDLASKLREAEETQSTLQAECDQYRSILAETEGMLRDLQKSVEEEEQVWRAKVG 1161
Cdd:pfam02463 708 EKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLK 787
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1162 AAEEELQKSRVTVKHLEEIVEKLKGELESSDQVREHTSHLEAELE-----KHMAAASAECQNYAKEVAGLRQLLLESQSQ 1236
Cdd:pfam02463 788 VEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEeeleeLALELKEEQKLEKLAEEELERLEEEITKEE 867
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1237 LDAAKSEAQKQSDELALVRQQLSEMKSHVEDGDIAGAPASSPEAPPAEQDPVQLKTQLEWTEAILEDEQTQRQKLTAEFE 1316
Cdd:pfam02463 868 LLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADE 947
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1317 EAQTSACRLQEELEKLRTAGPLESSETEEASQLKERLEKEKKltsdlgraatrlQELLKTTQEQLAREKDTVKKLQEQLE 1396
Cdd:pfam02463 948 KEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEER------------YNKDELEKERLEEEKKKLIRAIIEET 1015
|
.
gi 1475928828 1397 K 1397
Cdd:pfam02463 1016 C 1016
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
767-1201 |
1.57e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.30 E-value: 1.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 767 REHVKEVQQLQGKIRTLQEQLENGpNTQLARLQQENSILRDALNQATSQvesKQNAELAKLRQELSKVSKELVEKSEAVR 846
Cdd:COG4717 77 EEELKEAEEKEEEYAELQEELEEL-EEELEELEAELEELREELEKLEKL---LQLLPLYQELEALEAELAELPERLEELE 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 847 QDEQQRKALEAKAAAFEKQVLQLQashRESEEALQKRLDEVSRELCHTQSSHASLRADAEKAQEQQQQMAELHSKLQSSE 926
Cdd:COG4717 153 ERLEELRELEEELEELEAELAELQ---EELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEEL 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 927 AEVRSKCEELSgLHGQLQEARAEN----------SQLTERIRSIEALLEAGQARDAQDVQASQAEADQQQTRLKELESQV 996
Cdd:COG4717 230 EQLENELEAAA-LEERLKEARLLLliaaallallGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQ 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 997 SGLEKEAIELREAVEQQKVKNNDLREKNWKAMEALATAEQAcKEKLLSLTQAKEESEKQLCLIEAQTMEALLALLPELS- 1075
Cdd:COG4717 309 ALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEEL-QELLREAEELEEELQLEELEQEIAALLAEAGVEDEEEl 387
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1076 ---VLAQQNYTEWLQDLKEKGPTLLKHPP-----APAEPSSDLASKLREAEETQSTLQAECDQYRSILAETEGMLRDLQK 1147
Cdd:COG4717 388 raaLEQAEEYQELKEELEELEEQLEELLGeleelLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEE 467
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*....
gi 1475928828 1148 S-----VEEEEQVWRAKVGAAEEELQKSRVTVKHLEEIVEKLkgELESSDQVREHTSHL 1201
Cdd:COG4717 468 DgelaeLLQELEELKAELRELAEEWAALKLALELLEEAREEY--REERLPPVLERASEY 524
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
784-1399 |
2.15e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 45.88 E-value: 2.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 784 QEQLENGPNTQLARLQQENSILRDALNQATSQVESKQNAELAKlRQELSKVSKELVEKSEAVRQDEQQRKALEAkaaafe 863
Cdd:pfam15921 140 QEDLRNQLQNTVHELEAAKCLKEDMLEDSNTQIEQLRKMMLSH-EGVLQEIRSILVDFEEASGKKIYEHDSMST------ 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 864 kqvlqlqASHRESEEALQKRLDEVSRELCHTQSshaslradaekaqeqqqQMAELHSKLQSSEAEVRSKCEELsglhgqL 943
Cdd:pfam15921 213 -------MHFRSLGSAISKILRELDTEISYLKG-----------------RIFPVEDQLEALKSESQNKIELL------L 262
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 944 QEARAENSQL-TERIRSIEALLE-AGQARDAQDVQASQAEADQQQTR---------LKELESQVSGLEKeaiELREAVEQ 1012
Cdd:pfam15921 263 QQHQDRIEQLiSEHEVEITGLTEkASSARSQANSIQSQLEIIQEQARnqnsmymrqLSDLESTVSQLRS---ELREAKRM 339
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1013 QKVKNNDLREKnwkameaLATAEQACKEKLLSLTQAKEES---EKQLclieAQTMEALLALLPELSVLAQQNYTEWLQDL 1089
Cdd:pfam15921 340 YEDKIEELEKQ-------LVLANSELTEARTERDQFSQESgnlDDQL----QKLLADLHKREKELSLEKEQNKRLWDRDT 408
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1090 KEKgpTLLKHPPAPAEpssDLASKLREAEETQSTLQAECD-QYRSILAETEGMLRDLQK--SVEEEEQVWRAKVGAAEEE 1166
Cdd:pfam15921 409 GNS--ITIDHLRRELD---DRNMEVQRLEALLKAMKSECQgQMERQMAAIQGKNESLEKvsSLTAQLESTKEMLRKVVEE 483
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1167 LQKSRVTVKHLEEIVEKLKGELESSDQVREHTSHLEAELEKHMAAASAECQNYAKEVAGLRQLllesQSQLDAAKSEAQK 1246
Cdd:pfam15921 484 LTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNV----QTECEALKLQMAE 559
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1247 QSDELALVRQQLSEMKSHV-EDGDIAGApasspeappAEQDPVQLKTQLEWTEAILEDEQTQRQKLTAEFEEAQTSACRL 1325
Cdd:pfam15921 560 KDKVIEILRQQIENMTQLVgQHGRTAGA---------MQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDL 630
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1475928828 1326 QEELEKLRTAGPLESSETEEASQLKERLEKEKKLTSDLGRAATRLQELLKTTQEQLAREKD-TVKKLQEQLEKAE 1399
Cdd:pfam15921 631 ELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMEtTTNKLKMQLKSAQ 705
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
1125-1401 |
2.87e-04 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 45.23 E-value: 2.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1125 QAECDQYRSILAETEGMLRDLQKSVEE----EEQVwRAKVGAAEEELQKSR-----------VTVKHLEEIVEKLKGELE 1189
Cdd:pfam06160 85 KKALDEIEELLDDIEEDIKQILEELDEllesEEKN-REEVEELKDKYRELRktllanrfsygPAIDELEKQLAEIEEEFS 163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1190 SSDQVREHTSHLEA-----ELEKHMAAASAECQNYAKEVAGLRQLLLESQSQLDAAKSEAQKQ---------SDELALVR 1255
Cdd:pfam06160 164 QFEELTESGDYLEArevleKLEEETDALEELMEDIPPLYEELKTELPDQLEELKEGYREMEEEgyalehlnvDKEIQQLE 243
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1256 QQLSEMKSHVEDGDIAGApasspeappaEQDPVQLKTQLEWTEAILEDE-------QTQRQKLTAEFEEAQTSACRLQEE 1328
Cdd:pfam06160 244 EQLEENLALLENLELDEA----------EEALEEIEERIDQLYDLLEKEvdakkyvEKNLPEIEDYLEHAEEQNKELKEE 313
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1329 LEKLRTAGPLESSETEEASQLKERLEK-EKKLTSDLGRAA------TRLQELLKTTQEQLAREKDTVKKLQEQLEKAEDG 1401
Cdd:pfam06160 314 LERVQQSYTLNENELERVRGLEKQLEElEKRYDEIVERLEekevaySELQEELEEILEQLEEIEEEQEEFKESLQSLRKD 393
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
811-1012 |
2.88e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.75 E-value: 2.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 811 QATSQVESKQNAELAKLRQELSKVSKELVEKSEAVRQDEQQRKALEAKAAAFEKQVLQLQASHRESEE---ALQKRLDEV 887
Cdd:COG4942 16 AAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAelaELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 888 SRELCHTQSSHASLRADAEKAQEQQQQMAELHSK-----------LQSSEAEVRSKCEELSGLHGQLQEARAENSQLTER 956
Cdd:COG4942 96 RAELEAQKEELAELLRALYRLGRQPPLALLLSPEdfldavrrlqyLKYLAPARREQAEELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1475928828 957 IRSIEALLEAGQARDAQDVQASQAEADQQQTRLKELESQVSGLEKEAIELREAVEQ 1012
Cdd:COG4942 176 LEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIAR 231
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
822-1263 |
2.90e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.14 E-value: 2.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 822 AELAKLRQELSKVS-KELVEKSEAVRQDEQQRKALEAKAAAFEKQVLQLqashreseEALQKRLDEVSRELCHTQSSHAS 900
Cdd:COG4717 49 ERLEKEADELFKPQgRKPELNLKELKELEEELKEAEEKEEEYAELQEEL--------EELEEELEELEAELEELREELEK 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 901 LRADAekaqeqqqqmaelhsKLQSSEAEVRSKCEELSGLHGQLQEARAENSQLTERIRSIEALLEAGQARDAQDVQASQA 980
Cdd:COG4717 121 LEKLL---------------QLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQ 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 981 EADQQQTRLKELESQVSGLEKEAIELREAVEQQKVKNNDLR---EKNWKAMEALATAEQACKEKLLSLTQAkeesekQLC 1057
Cdd:COG4717 186 LSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEeelEQLENELEAAALEERLKEARLLLLIAA------ALL 259
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1058 LIEAQTMEALLALLPELSVLAQQnytewLQDLKEKGPTLLKHPPAPAEPSSDLASKLREAEETQSTLQAECDQYRSILAE 1137
Cdd:COG4717 260 ALLGLGGSLLSLILTIAGVLFLV-----LGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDL 334
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1138 TEGMLRDLQKSVEEEEQVWRAKVGAAEEELQKS----------RVTVKHLEEIVEKLKgELESSDQVREHTSHLEAELEK 1207
Cdd:COG4717 335 SPEELLELLDRIEELQELLREAEELEEELQLEEleqeiaallaEAGVEDEEELRAALE-QAEEYQELKEELEELEEQLEE 413
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*.
gi 1475928828 1208 HMAAASAECQNYAKEvaGLRQLLLESQSQLDAAKSEAQKQSDELALVRQQLSEMKS 1263
Cdd:COG4717 414 LLGELEELLEALDEE--ELEEELEELEEELEELEEELEELREELAELEAELEQLEE 467
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1162-1409 |
3.36e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.75 E-value: 3.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1162 AAEEELQKSRVTVKHLEEIVEKLKGELESSDQVREhtshleaELEKHMAAASAECQNYAKEVAGLRQLLLESQSQLDAAK 1241
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLA-------ALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1242 SEAQKQSDELALVRQQLSEMKSHvedgdiagapaSSPEAPPAEQDPVQLKTQLEWTEAILEDEQTQRQKLTAEFEEAQTS 1321
Cdd:COG4942 97 AELEAQKEELAELLRALYRLGRQ-----------PPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAAL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1322 ACRLQEELEKLRTAgplesseTEEASQLKERLEKEKKLTSDLGRAATRLQELLKTTQEQLAREKDTVKKLQEQLEKAEDG 1401
Cdd:COG4942 166 RAELEAERAELEAL-------LAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
....*...
gi 1475928828 1402 SSSKEGTS 1409
Cdd:COG4942 239 AAERTPAA 246
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
999-1401 |
3.64e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.14 E-value: 3.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 999 LEKEAIELREAVEQQKVKNNDLREKNWKAMEALATAEQACKEK---LLSLTQAKEESEKQLCLIEAQTMEALLALLPELS 1075
Cdd:COG4717 51 LEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELqeeLEELEEELEELEAELEELREELEKLEKLLQLLPL 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1076 VLAQQNYTEWLQDLKEKGPTLLKHppapAEPSSDLASKLREAEETQSTLQAECDQY-RSILAETEGMLRDLQKSVEEeeq 1154
Cdd:COG4717 131 YQELEALEAELAELPERLEELEER----LEELRELEEELEELEAELAELQEELEELlEQLSLATEEELQDLAEELEE--- 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1155 vWRAKVGAAEEELQKSRVTVKHLEEIVEKLKGELESSDQVREhtshLEAELEKHMAAA--------SAECQNYAKEVAGL 1226
Cdd:COG4717 204 -LQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEER----LKEARLLLLIAAallallglGGSLLSLILTIAGV 278
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1227 RQLLLE-----------SQSQLDAAKSEAQKQSDELALVRQQLSEMKSHVEdGDIAGAPASSPEAPPAEQDPVQLKTQLE 1295
Cdd:COG4717 279 LFLVLGllallflllarEKASLGKEAEELQALPALEELEEEELEELLAALG-LPPDLSPEELLELLDRIEELQELLREAE 357
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1296 WT--EAILEDEQTQRQKLTAEF----EEAQTSACRLQEELEKLRTAgpLESSETEEASQLKERLEKEKKLT-SDLGRAAT 1368
Cdd:COG4717 358 ELeeELQLEELEQEIAALLAEAgvedEEELRAALEQAEEYQELKEE--LEELEEQLEELLGELEELLEALDeEELEEELE 435
|
410 420 430
....*....|....*....|....*....|...
gi 1475928828 1369 RLQELLKTTQEQLAREKDTVKKLQEQLEKAEDG 1401
Cdd:COG4717 436 ELEEELEELEEELEELREELAELEAELEQLEED 468
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
685-1040 |
4.07e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.76 E-value: 4.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 685 WHKATQKGDPVAILKRQLEEKEKLLATEQEDAAVAKSKLRELNKEMAAEKAKAAAGEAKVKKQLVAREQEITAVQARMQA 764
Cdd:COG4717 134 LEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEE 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 765 SYREHVKEVQQLQGKIRTLQEQLENGPNTQlaRLQQENSILRDA-------LNQATSQVESKQNAELAKLRQELSKVSKE 837
Cdd:COG4717 214 ELEEAQEELEELEEELEQLENELEAAALEE--RLKEARLLLLIAaallallGLGGSLLSLILTIAGVLFLVLGLLALLFL 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 838 LVEKSEAVRQDEQQRKALEAKAAAFEKQVLQLQASHRESEEALQKR----LDEVSRELCHTQSSHASLRADAEKAQEQQQ 913
Cdd:COG4717 292 LLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEelleLLDRIEELQELLREAEELEEELQLEELEQE 371
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 914 QMAELHSKLQSSEAEVRSKCEELSGLHGQLQEARAENSQLTERIRSIEALLEAGQARDAQD--------VQASQAEADQQ 985
Cdd:COG4717 372 IAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEeleeleeeLEELEEELEEL 451
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 1475928828 986 QTRLKELESQVSGLEK--EAIELREAVEQQKVKNNDLREKNWKAMEALATAEQACKE 1040
Cdd:COG4717 452 REELAELEAELEQLEEdgELAELLQELEELKAELRELAEEWAALKLALELLEEAREE 508
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1286-1407 |
7.81e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 7.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1286 DPVQLKTQLEWTEAILEDEQTQRQKLTAEFEEAQTSACRLQEELEKLRTAgpLESSETEEASQLKERLEKEKKLTSDLGR 1365
Cdd:COG4913 282 RLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQ--IRGNGGDRLEQLEREIERLERELEERER 359
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1475928828 1366 AATRLQELLKTTQEQLAREKDTVKKLQEQLEKAEDGSSSKEG 1407
Cdd:COG4913 360 RRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELE 401
|
|
| dermokine |
cd21118 |
dermokine; Dermokine, also known as epidermis-specific secreted protein SK30/SK89, is a ... |
253-575 |
8.42e-04 |
|
dermokine; Dermokine, also known as epidermis-specific secreted protein SK30/SK89, is a skin-specific glycoprotein that may play a regulatory role in the crosstalk between barrier dysfunction and inflammation, and therefore play a role in inflammatory diseases such as psoriasis. Dermokine is one of the most highly expressed proteins in differentiating keratinocytes, found mainly in the spinous and granular layers of the epidermis, but also in the epithelia of the small intestine, macrophages of the lung, and endothelial cells of the lung. Mouse dermokine has been reported to be encoded by 22 exons, and its expression leads to alpha, beta, and gamma transcripts.
Pssm-ID: 411053 [Multi-domain] Cd Length: 495 Bit Score: 43.83 E-value: 8.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 253 EGTPNQGKKAEGA-----QNQGKKV--DTTPNQGKKVEGAPTQG-RKAEGAQNQAKKVEGAQNQGKKAEGAQNQGKKgeg 324
Cdd:cd21118 25 EGTGAGESAGHGLgdaisHGIGEAVgqGAKEAASSGIQNALGQGhGEEGGSTLGSRGDVFEHRLGEAARSLGNAGNE--- 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 325 aqnQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGkkveGAQNQGKKAeG 404
Cdd:cd21118 102 ---IGRQAEDIIRHGVDAVHNSWQGSGGHGAYGSQGGPGVQGHGIPGGTGGPWASGGNYGTNSLG----GSVGQGGNG-G 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 405 AQNQGKKAEGAQNQ-GKKAEGAQNQGKK-----AEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKVEGAQNQ 478
Cdd:cd21118 174 PLNYGTNSQGAVAQpGYGTVRGNNQNSGctnppPSGSHESFSNSGGSSSSGSSGSQGSHGSNGQGSSGSSGGQGNGGNNG 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 479 GKKA----EGAQNQGKKAEGAQNQGKKAEGAQNQGQKGEGAQNQGKKTEGAQGKKAERSPNQGKKGEGAPiQGKKADSVA 554
Cdd:cd21118 254 SSSSnsgnSGGSNGGSSGNSGSGSGGSSSGGSNGWGGSSSSGGSGGSGGGNKPECNNPGNDVRMAGGGGS-QGSKESSGS 332
|
330 340
....*....|....*....|...
gi 1475928828 555 N--QGTKVEGITNQGKKAEGSPS 575
Cdd:cd21118 333 HgsNGGNGQAEAVGGLNTLNSDA 355
|
|
| DUF4175 |
pfam13779 |
Domain of unknown function (DUF4175); |
324-518 |
1.02e-03 |
|
Domain of unknown function (DUF4175);
Pssm-ID: 463981 [Multi-domain] Cd Length: 833 Bit Score: 43.82 E-value: 1.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 324 GAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGkkaegaQNQGKKVEGAQNQGKKAE 403
Cdd:pfam13779 595 QQQQQQGQSEMQQAMDELGDLLREQQQLLDETFRQLQQQGGQQQGQPGQQGQQGQG------QQPGQGGQQPGAQMPPQG 668
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 404 GAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQnQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKVEGAQnqgkkaE 483
Cdd:pfam13779 669 GAEALGDLAERQQALRRRLEELQDELKELGGKE-PGQALGDAGRAMRDAEEALGQGDLAGAVDAQGRALEALR------K 741
|
170 180 190
....*....|....*....|....*....|....*
gi 1475928828 484 GAQNQGKKAEGAQNQGkkaeGAQNQGQKGEGAQNQ 518
Cdd:pfam13779 742 GAQQLAEAMQQQQGQG----QQPGQGGQGGRQAGQ 772
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
924-1353 |
1.09e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.79 E-value: 1.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 924 SSEAEVRSKCEELSGLHGQLQEARAENSQLTERIRSIEALLEAGQ----------------ARDAQDVQASQAEADQQQT 987
Cdd:COG3096 289 ELRRELFGARRQLAEEQYRLVEMARELEELSARESDLEQDYQAASdhlnlvqtalrqqekiERYQEDLEELTERLEEQEE 368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 988 RLKELESQVSGLEKEAIELREAVEQQKVKNNDLREknwkAMEALATAEQACKEKLlsltQAKEESEKQLCLIEaqtmeal 1067
Cdd:COG3096 369 VVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQ----ALDVQQTRAIQYQQAV----QALEKARALCGLPD------- 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1068 lallpelsvLAQQNYTEWLQDLKEKgptllkhppapaepSSDLASKLREAEETQSTLQAECDQY-------RSILAETE- 1139
Cdd:COG3096 434 ---------LTPENAEDYLAAFRAK--------------EQQATEEVLELEQKLSVADAARRQFekayelvCKIAGEVEr 490
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1140 --------GMLRDL--QKSVEEEEQVWRAKVGAAEEELQKSRVTVKHLEEIVEKLKGELESSDQVREHTSHLEAELEKhm 1209
Cdd:COG3096 491 sqawqtarELLRRYrsQQALAQRLQQLRAQLAELEQRLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLEE-- 568
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1210 aaasaecqnyakevaglrqlLLESQSQLDAAKSEAQKQSDELALVRQQLSemkshvedgdiAGAPASSPEAPPAEQDPVQ 1289
Cdd:COG3096 569 --------------------LEEQAAEAVEQRSELRQQLEQLRARIKELA-----------ARAPAWLAAQDALERLREQ 617
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1475928828 1290 LKTQLEWTEAILEDEQTQRQK---LTAEFEEAQTSACRLQEELEKLRTAGpleSSETEEASQLKERL 1353
Cdd:COG3096 618 SGEALADSQEVTAAMQQLLERereATVERDELAARKQALESQIERLSQPG---GAEDPRLLALAERL 681
|
|
| Gag_spuma |
pfam03276 |
Spumavirus gag protein; |
238-388 |
1.21e-03 |
|
Spumavirus gag protein;
Pssm-ID: 460872 [Multi-domain] Cd Length: 614 Bit Score: 43.20 E-value: 1.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 238 QGKKAEGTPNQGKKAeGTPNQGKKAEGAQNQgkkvdtTPNQGKKVEGAPTQGRKAEGAQNQAKKVEGAQNQGKKAEGAQN 317
Cdd:pfam03276 479 PQIRASRGPGPGPSA-GEGRGGPANEGRGGP------CNAGGGNDCGANGQNDGGENIQNGGQELRSQGGQNLRSGGGQG 551
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1475928828 318 QGKKGegaqNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAegaqNQGKKAEGAQNQGKKAEGAQNQ 388
Cdd:pfam03276 552 QRWGE----GRGNRENENTENSEQRPREIQAGSGRPGNAGQGVKG----AAGQGGKGAAGRGGRGNGAGDQ 614
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
775-1002 |
1.40e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 42.96 E-value: 1.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 775 QLQGKIRTLQE--QLENGPNTQLARLQQENSILRDALNQATSQVESK---QNAELAKLRQELSKVSKELVEKSEAVRQDE 849
Cdd:pfam07888 35 RLEECLQERAEllQAQEAANRQREKEKERYKRDREQWERQRRELESRvaeLKEELRQSREKHEELEEKYKELSASSEELS 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 850 QQRKALEAKAAAFEKQVLQLQASHRESEEALQKRLDEVSRELCHTQSSHASLRADAEKAQEqqqqmaeLHSKLQSSEAEV 929
Cdd:pfam07888 115 EEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQ-------LQAKLQQTEEEL 187
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1475928828 930 RSKCEELSGLHGQLQEARAENSQLTERIRSIEALLEAGQARDAQDvQASQAEADQQQTRLKELESQVSGLEKE 1002
Cdd:pfam07888 188 RSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAEN-EALLEELRSLQERLNASERKVEGLGEE 259
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
821-1047 |
2.15e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 42.64 E-value: 2.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 821 NAELAKLRQELSKVSKELVEKSEAVRQDEQQRKALEAKAAAFEKQVLQlqaSHRESEEALQKRLDEVSRELCHTQSSHAS 900
Cdd:PRK04863 836 EAELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLSALNRLLPR---LNLLADETLADRVEEIREQLDEAEEAKRF 912
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 901 LRadaekaqeqqqQMAELHSKLQSSEAEVRSKCEELSGLHGQLQEARAENSQLTERIRsieALLEAGQAR------DAQD 974
Cdd:PRK04863 913 VQ-----------QHGNALAQLEPIVSVLQSDPEQFEQLKQDYQQAQQTQRDAKQQAF---ALTEVVQRRahfsyeDAAE 978
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1475928828 975 VQASQAEADQQ-QTRLKELESqvsglekeaiELREAVEQQKVKNNDLREKNwKAMEALATAEQACKEKLLSLTQ 1047
Cdd:PRK04863 979 MLAKNSDLNEKlRQRLEQAEQ----------ERTRAREQLRQAQAQLAQYN-QVLASLKSSYDAKRQMLQELKQ 1041
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
817-1266 |
2.24e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 42.42 E-value: 2.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 817 ESKQNAELAKLRQELSKVSKELVEKSEAVRQDEQQRKALEAKAAAFEKQVLQLQASHRESEEALQKRLDEVSRELCHTQS 896
Cdd:pfam05557 46 ESDRNQELQKRIRLLEKREAEAEEALREQAELNRLKKKYLEALNKKLNEKESQLADAREVISCLKNELSELRRQIQRAEL 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 897 SHASLRADAEKaqeqqqqmaelhskLQSSEAEVRSKCEELSGLHGQLQEARAENSQLTERIRSIEALLEAgQARDAQDVQ 976
Cdd:pfam05557 126 ELQSTNSELEE--------------LQERLDLLKAKASEAEQLRQNLEKQQSSLAEAEQRIKELEFEIQS-QEQDSEIVK 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 977 ASQAEadqqQTRLKELESQVSGLEKEAIELREAVEqqkvkNNDLREKNWKAMEALATAEQACKEKLLSLTQAKEESEKQL 1056
Cdd:pfam05557 191 NSKSE----LARIPELEKELERLREHNKHLNENIE-----NKLLLKEEVEDLKRKLEREEKYREEAATLELEKEKLEQEL 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1057 CLIEAQTMEALLALLPElsvlaqqnytewlQDLKEKGPTLLKHPPAPAEPSSDLASKLREAEETQSTLQAECDQYRS--- 1133
Cdd:pfam05557 262 QSWVKLAQDTGLNLRSP-------------EDLSRRIEQLQQREIVLKEENSSLTSSARQLEKARRELEQELAQYLKkie 328
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1134 ----ILAETEGMLRDLQKSV---EEEEQVWRAKVGAAEEELQKSrvtvKHLEEIVEKLKGELESSDQVREHTSHLEAELE 1206
Cdd:pfam05557 329 dlnkKLKRHKALVRRLQRRVlllTKERDGYRAILESYDKELTMS----NYSPQLLERIEEAEDMTQKMQAHNEEMEAQLS 404
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1475928828 1207 KHMAAASA---ECQNYAKEVAGLR-QLLLESQSQLDAAKSEAQKQSDELALVRQQLSEMKSHVE 1266
Cdd:pfam05557 405 VAEEELGGykqQAQTLERELQALRqQESLADPSYSKEEVDSLRRKLETLELERQRLREQKNELE 468
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
771-1399 |
2.49e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 42.26 E-value: 2.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 771 KEVQQLQGKIRTLQEQLENGPNTQLARLQQENSILRDALNQATSQVESKQNAELAKLRQELSKVSKELvekseavrqdeQ 850
Cdd:TIGR00618 260 QLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLL-----------M 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 851 QRKALEAKAAAFEKQVLQLQASHRESEEALQK------RLDEVSRELCHTQSSHAsLRADAEKAQEQQQQMAELHSKLQS 924
Cdd:TIGR00618 329 KRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAhevatsIREISCQQHTLTQHIHT-LQQQKTTLTQKLQSLCKELDILQR 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 925 SEAEVRSKCEELSGLHGQLQEARAENSQLTERIrsieALLEAGQARDAQDVQASQAEADQQQTRLKELESQVSglEKEAI 1004
Cdd:TIGR00618 408 EQATIDTRTSAFRDLQGQLAHAKKQQELQQRYA----ELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQ--TKEQI 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1005 ELREAVEQQKVKnndlreknwKAMEALATAEQACKEKLLSLTQAKE---ESEKQLCLIEAQTMEALLALLPELSVLAQ-Q 1080
Cdd:TIGR00618 482 HLQETRKKAVVL---------ARLLELQEEPCPLCGSCIHPNPARQdidNPGPLTRRMQRGEQTYAQLETSEEDVYHQlT 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1081 NYTEWLQDLKEKGPTLLKHPPAPA----EPSSDLASKLREAEETQSTLQAECDQYRSILAETEGMLRDLQKSVEEEEQvw 1156
Cdd:TIGR00618 553 SERKQRASLKEQMQEIQQSFSILTqcdnRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDV-- 630
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1157 RAKVGAAEEELQKSRVTVKHLEEIVEKLKgELESSDQVREHTSHLEAELEKHMAAASAECQNYAKEVAGLRQLLLESQSQ 1236
Cdd:TIGR00618 631 RLHLQQCSQELALKLTALHALQLTLTQER-VREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLREL 709
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1237 LDAAKsEAQKQSDELALVR-------QQLSEMKSHVEDGDIAGAPASSPEAPPAEQDPVQLKTQLEWTEAILEDEQTQRQ 1309
Cdd:TIGR00618 710 ETHIE-EYDREFNEIENASsslgsdlAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQ 788
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1310 KLTAEFEEAQTSACRLQEELEKLRTAGPLESSET-----EEASQLKERLEKEKKLTSDLgraaTRLQELLKTTQEQLARE 1384
Cdd:TIGR00618 789 FFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQcetlvQEEEQFLSRLEEKSATLGEI----THQLLKYEECSKQLAQL 864
|
650
....*....|....*
gi 1475928828 1385 KDTVKKLQEQLEKAE 1399
Cdd:TIGR00618 865 TQEQAKIIQLSDKLN 879
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
818-1400 |
3.29e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 41.88 E-value: 3.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 818 SKQNAELAKLRQELSKVSKELVEKSEAVRQDEQQRKALEAKAAAFEKQVLQLQASHRESEEALQKRLDEVSRELCHTQSS 897
Cdd:TIGR00618 162 SKEKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQS 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 898 HASLRADAEKAQEQqqqmaelhSKLQSSEAEVRSKCEELSGL---HGQLQEARAENSQLTERIRSIEALLEAGQARDA-- 972
Cdd:TIGR00618 242 HAYLTQKREAQEEQ--------LKKQQLLKQLRARIEELRAQeavLEETQERINRARKAAPLAAHIKAVTQIEQQAQRih 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 973 -----------------QDVQASQAEADQQQTRLKELESQVSGLEKEAiELREAVEQQKVKNNDLREKNWKAMEALATAE 1035
Cdd:TIGR00618 314 telqskmrsrakllmkrAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAH-EVATSIREISCQQHTLTQHIHTLQQQKTTLT 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1036 QACKEKLLSLTQAKEESEKQLCLIEAQTMEALLALLPELSVLAQQNYTEWLQDLKEKGPTLLKHPPAPAEpssDLASKLR 1115
Cdd:TIGR00618 393 QKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQ---ESAQSLK 469
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1116 EAEETQSTLQAECDQYRSILAETEGMLRDLQKS---VEEEEQVWRAKV------GAAEEELQKSRVTVKHLEEIVEKLKG 1186
Cdd:TIGR00618 470 EREQQLQTKEQIHLQETRKKAVVLARLLELQEEpcpLCGSCIHPNPARqdidnpGPLTRRMQRGEQTYAQLETSEEDVYH 549
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1187 ELESSDQVREHTSHLEAELEKHMAAASAECQNYAKEVAGLRQLLLESQSQLDAaksEAQKQSDELALVRQQLSEMKSHVE 1266
Cdd:TIGR00618 550 QLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEK---LSEAEDMLACEQHALLRKLQPEQD 626
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1267 DGDIagapasSPEAPPAEQDPVQLKTQLEWTE-AILEDEQTQRQKLTAEFEEAQTSACRLQEELEKLRTAGPLESSETEE 1345
Cdd:TIGR00618 627 LQDV------RLHLQQCSQELALKLTALHALQlTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLA 700
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*
gi 1475928828 1346 ASQLKERLEKEKKLTSDlgRAATRLQELLKTTQEQLAREKDTVKKLQEQLEKAED 1400
Cdd:TIGR00618 701 QCQTLLRELETHIEEYD--REFNEIENASSSLGSDLAAREDALNQSLKELMHQAR 753
|
|
| Med15 |
pfam09606 |
ARC105 or Med15 subunit of Mediator complex non-fungal; The approx. 70 residue Med15 domain of ... |
186-486 |
4.27e-03 |
|
ARC105 or Med15 subunit of Mediator complex non-fungal; The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development.
Pssm-ID: 312941 [Multi-domain] Cd Length: 732 Bit Score: 41.53 E-value: 4.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 186 GAKGNTPATGTTQGKKAEGTQNQSKKAEGAPNQGRKAEGTPNQGKKTEGTPNQGKKAEGTPNQgKKAEGTPNQGKKAEGA 265
Cdd:pfam09606 111 GQQMGGPGTASNLLASLGRPQMPMGGAGFPSQMSRVGRMQPGGQAGGMMQPSSGQPGSGTPNQ-MGPNGGPGQGQAGGMN 189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 266 QNQGKKVDTT-PNQ-GKKVEGAPTQGRKAEGAQNQAKKVEGAQNQ-GKKAEGAQNQGKKGEGAQnQGKKAEGAQNQGKKA 342
Cdd:pfam09606 190 GGQQGPMGGQmPPQmGVPGMPGPADAGAQMGQQAQANGGMNPQQMgGAPNQVAMQQQQPQQQGQ-QSQLGMGINQMQQMP 268
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 343 EGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKVEGAQNQGKKAEGAQNQGKKAEGAQNQGKKA 422
Cdd:pfam09606 269 QGVGGGAGQGGPGQPMGPPGQQPGAMPNVMSIGDQNNYQQQQTRQQQQQQGGNHPAAHQQQMNQSVGQGGQVVALGGLNH 348
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1475928828 423 EGAQNQGKKA-EGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKVEGAQNQGKKAEGAQ 486
Cdd:pfam09606 349 LETWNPGNFGgLGANPMQRGQPGMMSSPSPVPGQQVRQVTPNQFMRQSPQPSVPSPQGPGSQPPQ 413
|
|
| DUF4175 |
pfam13779 |
Domain of unknown function (DUF4175); |
354-536 |
4.84e-03 |
|
Domain of unknown function (DUF4175);
Pssm-ID: 463981 [Multi-domain] Cd Length: 833 Bit Score: 41.51 E-value: 4.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 354 GAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKVEGAQNQGKKAEGAQNQGkkaegaQNQGKKAEGAQNQGKKAE 433
Cdd:pfam13779 595 QQQQQQGQSEMQQAMDELGDLLREQQQLLDETFRQLQQQGGQQQGQPGQQGQQGQG------QQPGQGGQQPGAQMPPQG 668
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 434 GAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQnQGKKVEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAE----GAQNQG 509
Cdd:pfam13779 669 GAEALGDLAERQQALRRRLEELQDELKELGGKE-PGQALGDAGRAMRDAEEALGQGDLAGAVDAQGRALEalrkGAQQLA 747
|
170 180
....*....|....*....|....*..
gi 1475928828 510 QKGEGAQNQGKktEGAQGKKAERSPNQ 536
Cdd:pfam13779 748 EAMQQQQGQGQ--QPGQGGQGGRQAGQ 772
|
|
| 2A1904 |
TIGR00927 |
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
188-402 |
5.28e-03 |
|
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 41.52 E-value: 5.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 188 KGNTPATGTTQGKKAEgTQNQSKKAEGAPNQGRKAEGTPNQGKKTEGTPNQGKKAEG-TPNQGKKAEGTPNQGKKAEGAQ 266
Cdd:TIGR00927 690 KGEQEGEGEIEAKEAD-HKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGeGEAEGKHEVETEGDRKETEHEG 768
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 267 NQGKKVDTTPNQGK--KVEGAPTQGRKAEGAQNQAKKVEGAQNQGKKAEGAQNQGKKGEGAQNQGKKAEGAQNQGKKAEG 344
Cdd:TIGR00927 769 ETEAEGKEDEDEGEiqAGEDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQD 848
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1475928828 345 AQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKVEGAQNQGKKA 402
Cdd:TIGR00927 849 EKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENEEPLSLEWPETRQKQA 906
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
698-932 |
5.77e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.90 E-value: 5.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 698 LKRQLEEKEKLLATEQEDAAVAKSKLRELNKEMAAEKAkaaageakvkkQLVAREQEITAVQARMqasyREHVKEVQQLQ 777
Cdd:COG4942 32 LQQEIAELEKELAALKKEEKALLKQLAALERRIAALAR-----------RIRALEQELAALEAEL----AELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 778 GKIRTLQEQLENgpntQLARLQQENSILRDALnqatsQVESKQNAELAKLRQELSKVSKELVEKSEAVRQDEQQRKALEA 857
Cdd:COG4942 97 AELEAQKEELAE----LLRALYRLGRQPPLAL-----LLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRA 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1475928828 858 KAAAFEKQVLQLQASHRESEEALQKRLDEVSRELCHTQSSHASLRADAEKAQEQQQQMAELHSKLQSSEAEVRSK 932
Cdd:COG4942 168 ELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
849-1022 |
5.80e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.16 E-value: 5.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 849 EQQRKALEAKAAAFEKQVLQLQASHR-----ESEEALQKRLDEVSRELCHTQSSHASLRADAEKAQEQQQQMAELHSKLQ 923
Cdd:COG3206 181 EEQLPELRKELEEAEAALEEFRQKNGlvdlsEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELL 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 924 SSEAevrskceeLSGLHGQLQEARAENSQLTER-------IRSIEALLEAGQARDAQDVQASQAEAdqqQTRLKELESQV 996
Cdd:COG3206 261 QSPV--------IQQLRAQLAELEAELAELSARytpnhpdVIALRAQIAALRAQLQQEAQRILASL---EAELEALQARE 329
|
170 180
....*....|....*....|....*.
gi 1475928828 997 SGLEKEAIELREAVEQQKVKNNDLRE 1022
Cdd:COG3206 330 ASLQAQLAQLEARLAELPELEAELRR 355
|
|
| tolA |
PRK09510 |
cell envelope integrity inner membrane protein TolA; Provisional |
296-520 |
5.85e-03 |
|
cell envelope integrity inner membrane protein TolA; Provisional
Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 40.56 E-value: 5.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 296 QNQAKKVEGAQNQGKKAEGAQNQGKKGEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGA 375
Cdd:PRK09510 74 AKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEA 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 376 QNQGKKAEGAQNQGKKVEGAQNQGKKAEGAQnqgKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGA 455
Cdd:PRK09510 154 KRAAAAAKKAAAEAKKKAEAEAAKKAAAEAK---KKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKA 230
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1475928828 456 QNQGKKAEGAQNQGKKVEGAQNQGKKAEGAQNQGKKAEGaQNQGKKAEGAQNQGQKGEGAQNQGK 520
Cdd:PRK09510 231 AAEAKAAAEKAAAAKAAEKAAAAKAAAEVDDLFGGLDSG-KNAPKTGGGAKGNGAQGAGAGNGKK 294
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
801-1266 |
6.29e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.10 E-value: 6.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 801 ENSILRDALNQATSQV-ESKQNAELAKLRQELSKVSKELVEKSEAV------RQDEQQRKALEaKAAAFEKQVlqlqASH 873
Cdd:PRK04863 224 ENSGVRKAFQDMEAALrENRMTLEAIRVTQSDRDLFKHLITESTNYvaadymRHANERRVHLE-EALELRREL----YTS 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 874 RESEEALQKRLDEVSRELCHTQSSHASLRADAEKAQEqqqqmaelhsKLQSSEAEVRskceelsgLHGQLQEARAENSQL 953
Cdd:PRK04863 299 RRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASD----------HLNLVQTALR--------QQEKIERYQADLEEL 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 954 TERIRSIEALLEAGQARdaqdVQASQAEADQQQTRLKELESQVSG-------LEKEAIELREAVE-----QQKVKNNDLR 1021
Cdd:PRK04863 361 EERLEEQNEVVEEADEQ----QEENEARAEAAEEEVDELKSQLADyqqaldvQQTRAIQYQQAVQaleraKQLCGLPDLT 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1022 EKNWKAM-EALATAEQACKEKLLSLtqakeesEKQLCLIEAqtmeallallpelsvlAQQNYTEWLQDLKEKGPTLlkhp 1100
Cdd:PRK04863 437 ADNAEDWlEEFQAKEQEATEELLSL-------EQKLSVAQA----------------AHSQFEQAYQLVRKIAGEV---- 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1101 papaepssdlasklrEAEETQSTLQAECDQYRSilaetegmlrdlQKSVEEEEQVWRAKVGAAEEELQKSRVTVKHLEEI 1180
Cdd:PRK04863 490 ---------------SRSEAWDVARELLRRLRE------------QRHLAEQLQQLRMRLSELEQRLRQQQRAERLLAEF 542
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 1181 VEKLKGELESSDQVREHTSHLEAELEKHMAAASAECQNYAKEVAGLRQL-----LLESQS----QLDAAKSEAQKQSDEL 1251
Cdd:PRK04863 543 CKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLqariqRLAARApawlAAQDALARLREQSGEE 622
|
490
....*....|....*.
gi 1475928828 1252 ALVRQQLSE-MKSHVE 1266
Cdd:PRK04863 623 FEDSQDVTEyMQQLLE 638
|
|
| MARTX_Nterm |
NF012221 |
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ... |
268-447 |
9.76e-03 |
|
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.
Pssm-ID: 467957 [Multi-domain] Cd Length: 1848 Bit Score: 40.59 E-value: 9.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 268 QGKKVDTTPNQGKKVEGAPTQgrkAEGAQNQAKKVEgAQNQGKKAEGAQNQG---KKGEGAQNQGKKAEG-AQNQGKKAE 343
Cdd:NF012221 1659 QEQLDDAKKISGKQLADAKQR---HVDNQQKVKDAV-AKSEAGVAQGEQNQAnaeQDIDDAKADAEKRKDdALAKQNEAQ 1734
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 344 GAQNQGKK-AEGAQNQGKKAegAQNQGKKAEGAQNQGKKAEgaQNQGKKVEgaqNQGKKAEGAQNQGKKAEGAQNQG--- 419
Cdd:NF012221 1735 QAESDANAaANDAQSRGEQD--ASAAENKANQAQADAKGAK--QDESDKPN---RQGAAGSGLSGKAYSVEGVAEPGshi 1807
|
170 180
....*....|....*....|....*....
gi 1475928828 420 KKAEGAQNQGKKAEGAQNQGKKA-EGAQN 447
Cdd:NF012221 1808 NPDSPAAADGRFSEGLTEQEQEAlEGATN 1836
|
|
| PRK05035 |
PRK05035 |
electron transport complex protein RnfC; Provisional |
350-580 |
9.95e-03 |
|
electron transport complex protein RnfC; Provisional
Pssm-ID: 235334 [Multi-domain] Cd Length: 695 Bit Score: 40.32 E-value: 9.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 350 KKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQN-QGKKVEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQ 428
Cdd:PRK05035 465 EKAAREARHKKAAEARAAKDKDAVAAALARVKAKKAAAtQPIVIKAGARPDNSAVIAAREARKAQARARQAEKQAAAAAD 544
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475928828 429 GKKAEGAqnqgkkAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKVEGAQN--QGKKAEGAQNQGKKAEG-AQNQGKKAEGA 505
Cdd:PRK05035 545 PKKAAVA------AAIARAKAKKAAQQAANAEAEEEVDPKKAAVAAAIAraKAKKAAQQAASAEPEEQvAEVDPKKAAVA 618
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1475928828 506 QnqgqkgEGAQNQGKKTEGAQGKKAERSPNQGKKGEGAPIQGKKADSVANQGTKVEgitnqgkkaEGSPSEGKKA 580
Cdd:PRK05035 619 A------AIARAKAKKAEQQANAEPEEPVDPRKAAVAAAIARAKARKAAQQQANAE---------PEEAEDPKKA 678
|
|
| |
