la-related protein 1 isoform 5 [Homo sapiens]
LAM and DM15 domain-containing protein( domain architecture ID 13066634)
LAM and DM15 domain-containing protein
List of domain hits
Name | Accession | Description | Interval | E-value | |||
LAM super family | cl02755 | LA motif RNA-binding domain; This domain is found at the N-terminus of La RNA-binding proteins ... |
166-238 | 1.22e-44 | |||
LA motif RNA-binding domain; This domain is found at the N-terminus of La RNA-binding proteins as well as in other related proteins. Typically, the domain co-occurs with an RNA-recognition motif (RRM), and together these domains function to bind primary transcripts of RNA polymerase III in the La autoantigen (Lupus La protein, LARP3, or Sjoegren syndrome type B antigen, SS-B). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes. The actual alignment was detected with superfamily member cd08037: Pssm-ID: 470666 Cd Length: 73 Bit Score: 154.68 E-value: 1.22e-44
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DM15 | smart00684 | Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144.7. Unknown ... |
688-726 | 1.06e-14 | |||
Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144.7. Unknown function; : Pssm-ID: 128927 Cd Length: 39 Bit Score: 68.55 E-value: 1.06e-14
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DM15 super family | cl02733 | Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144.7. Unknown ... |
647-687 | 1.08e-10 | |||
Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144.7. Unknown function; The actual alignment was detected with superfamily member smart00684: Pssm-ID: 128927 Cd Length: 39 Bit Score: 57.00 E-value: 1.08e-10
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LHP1 super family | cl34938 | La protein, small RNA-binding pol III transcript stabilizing protein and related ... |
169-317 | 5.45e-09 | |||
La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]; The actual alignment was detected with superfamily member COG5193: Pssm-ID: 227520 [Multi-domain] Cd Length: 438 Bit Score: 59.29 E-value: 5.45e-09
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Name | Accession | Description | Interval | E-value | |||
LARP_1 | cd08037 | La RNA-binding domain of La-related protein 1; This domain is found in vertebrate La-related ... |
166-238 | 1.22e-44 | |||
La RNA-binding domain of La-related protein 1; This domain is found in vertebrate La-related protein 1 (LARP1). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes. Pssm-ID: 153406 Cd Length: 73 Bit Score: 154.68 E-value: 1.22e-44
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LA | smart00715 | Domain in the RNA-binding Lupus La protein; unknown function; |
163-239 | 9.01e-34 | |||
Domain in the RNA-binding Lupus La protein; unknown function; Pssm-ID: 128955 [Multi-domain] Cd Length: 80 Bit Score: 124.27 E-value: 9.01e-34
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La | pfam05383 | La domain; This presumed domain is found at the N-terminus of La RNA-binding proteins as well ... |
169-225 | 9.12e-25 | |||
La domain; This presumed domain is found at the N-terminus of La RNA-binding proteins as well as other proteins. The function of this region is uncertain. Pssm-ID: 461635 Cd Length: 59 Bit Score: 97.88 E-value: 9.12e-25
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DM15 | smart00684 | Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144.7. Unknown ... |
688-726 | 1.06e-14 | |||
Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144.7. Unknown function; Pssm-ID: 128927 Cd Length: 39 Bit Score: 68.55 E-value: 1.06e-14
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DM15 | smart00684 | Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144.7. Unknown ... |
647-687 | 1.08e-10 | |||
Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144.7. Unknown function; Pssm-ID: 128927 Cd Length: 39 Bit Score: 57.00 E-value: 1.08e-10
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LHP1 | COG5193 | La protein, small RNA-binding pol III transcript stabilizing protein and related ... |
169-317 | 5.45e-09 | |||
La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]; Pssm-ID: 227520 [Multi-domain] Cd Length: 438 Bit Score: 59.29 E-value: 5.45e-09
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Name | Accession | Description | Interval | E-value | |||
LARP_1 | cd08037 | La RNA-binding domain of La-related protein 1; This domain is found in vertebrate La-related ... |
166-238 | 1.22e-44 | |||
La RNA-binding domain of La-related protein 1; This domain is found in vertebrate La-related protein 1 (LARP1). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes. Pssm-ID: 153406 Cd Length: 73 Bit Score: 154.68 E-value: 1.22e-44
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LARP_1_2 | cd08034 | La RNA-binding domain proteins similar to La-related proteins 1 and 2; This domain is found in ... |
166-238 | 2.05e-43 | |||
La RNA-binding domain proteins similar to La-related proteins 1 and 2; This domain is found in proteins similar to vertebrate La-related proteins 1 and 2 (LARP1, LARP2). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes. Pssm-ID: 153403 Cd Length: 73 Bit Score: 151.43 E-value: 2.05e-43
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LARP_2 | cd08038 | La RNA-binding domain of La-related protein 2; This domain is found in vertebrate La-related ... |
166-238 | 2.42e-35 | |||
La RNA-binding domain of La-related protein 2; This domain is found in vertebrate La-related protein 2 (LARP2). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes. Pssm-ID: 153407 Cd Length: 73 Bit Score: 128.53 E-value: 2.42e-35
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LA | smart00715 | Domain in the RNA-binding Lupus La protein; unknown function; |
163-239 | 9.01e-34 | |||
Domain in the RNA-binding Lupus La protein; unknown function; Pssm-ID: 128955 [Multi-domain] Cd Length: 80 Bit Score: 124.27 E-value: 9.01e-34
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LAM | cd07323 | LA motif RNA-binding domain; This domain is found at the N-terminus of La RNA-binding proteins ... |
166-238 | 8.46e-32 | |||
LA motif RNA-binding domain; This domain is found at the N-terminus of La RNA-binding proteins as well as in other related proteins. Typically, the domain co-occurs with an RNA-recognition motif (RRM), and together these domains function to bind primary transcripts of RNA polymerase III in the La autoantigen (Lupus La protein, LARP3, or Sjoegren syndrome type B antigen, SS-B). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes. Pssm-ID: 153396 Cd Length: 75 Bit Score: 118.40 E-value: 8.46e-32
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La | pfam05383 | La domain; This presumed domain is found at the N-terminus of La RNA-binding proteins as well ... |
169-225 | 9.12e-25 | |||
La domain; This presumed domain is found at the N-terminus of La RNA-binding proteins as well as other proteins. The function of this region is uncertain. Pssm-ID: 461635 Cd Length: 59 Bit Score: 97.88 E-value: 9.12e-25
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LARP_4_5_like | cd08031 | La RNA-binding domain of proteins similar to La-related proteins 4 and 5; This domain is found ... |
166-237 | 4.27e-19 | |||
La RNA-binding domain of proteins similar to La-related proteins 4 and 5; This domain is found in proteins similar to La-related proteins 4 and 5 (LARP4, LARP5). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes. Pssm-ID: 153400 Cd Length: 75 Bit Score: 82.10 E-value: 4.27e-19
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LARP_6 | cd08033 | La RNA-binding domain of La-related protein 6; This domain is found in animal and plant ... |
166-238 | 3.60e-18 | |||
La RNA-binding domain of La-related protein 6; This domain is found in animal and plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes. Pssm-ID: 153402 Cd Length: 77 Bit Score: 79.63 E-value: 3.60e-18
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DM15 | smart00684 | Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144.7. Unknown ... |
688-726 | 1.06e-14 | |||
Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144.7. Unknown function; Pssm-ID: 128927 Cd Length: 39 Bit Score: 68.55 E-value: 1.06e-14
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LARP_7 | cd08032 | La RNA-binding domain of La-related protein 7; LARP7 is a component of the 7SK snRNP, a key ... |
162-239 | 1.47e-14 | |||
La RNA-binding domain of La-related protein 7; LARP7 is a component of the 7SK snRNP, a key factor in the regulation of RNA polymerase II transcription. 7SK functionality is dependent on the presence of LARP7, which is thought to stabilize the 7SK RNA by interacting with its 3' end. The release of 7SK RNA from P-TEFb/HEXIM/7SK complexes activates the cyclin-dependent kinase P-TEFb, which in turn phosphorylates the C-terminal domain of RNA pol II and mediates a transition into productive transcription elongation. Pssm-ID: 153401 Cd Length: 82 Bit Score: 69.58 E-value: 1.47e-14
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LARP_3 | cd08028 | La RNA-binding domain of La-related protein 3; This domain is found at the N-terminus of the ... |
165-238 | 3.08e-14 | |||
La RNA-binding domain of La-related protein 3; This domain is found at the N-terminus of the La autoantigen and similar proteins, and co-occurs with an RNA-recognition motif (RRM). Together these domains function to bind primary transcripts of RNA polymerase III at their 3' terminus and protect them from exonucleolytic degradation. Binding is specific for the 3'-terminal UUU-OH motif. The La autoantigen is also called Lupus La protein, LARP3, or Sjoegren syndrome type B antigen (SS-B). Pssm-ID: 153397 Cd Length: 82 Bit Score: 68.48 E-value: 3.08e-14
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LARP_4 | cd08035 | La RNA-binding domain of La-related protein 4; This domain is found in vertebrate La-related ... |
166-237 | 3.60e-14 | |||
La RNA-binding domain of La-related protein 4; This domain is found in vertebrate La-related protein 4 (LARP4), also known as c-MPL binding protein. La-type domains often co-occur with RNA-recognition motifs (RRMs). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes. Pssm-ID: 153404 Cd Length: 75 Bit Score: 68.15 E-value: 3.60e-14
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LA_like_fungal | cd08029 | La-motif domain of fungal proteins similar to the La autoantigen; This domain is found in ... |
166-238 | 3.27e-11 | |||
La-motif domain of fungal proteins similar to the La autoantigen; This domain is found in fungal proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes. Pssm-ID: 153398 Cd Length: 76 Bit Score: 59.62 E-value: 3.27e-11
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DM15 | smart00684 | Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144.7. Unknown ... |
647-687 | 1.08e-10 | |||
Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144.7. Unknown function; Pssm-ID: 128927 Cd Length: 39 Bit Score: 57.00 E-value: 1.08e-10
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LARP_5 | cd08036 | La RNA-binding domain of La-related protein 5; This domain is found in vertebrate La-related ... |
166-237 | 4.12e-09 | |||
La RNA-binding domain of La-related protein 5; This domain is found in vertebrate La-related protein 5 (LARP5). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes. Pssm-ID: 153405 Cd Length: 75 Bit Score: 53.87 E-value: 4.12e-09
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LHP1 | COG5193 | La protein, small RNA-binding pol III transcript stabilizing protein and related ... |
169-317 | 5.45e-09 | |||
La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]; Pssm-ID: 227520 [Multi-domain] Cd Length: 438 Bit Score: 59.29 E-value: 5.45e-09
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LA_like_plant | cd08030 | La-motif domain of plant proteins similar to the La autoantigen; This domain is found in plant ... |
169-238 | 2.52e-08 | |||
La-motif domain of plant proteins similar to the La autoantigen; This domain is found in plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes. Pssm-ID: 153399 Cd Length: 90 Bit Score: 52.01 E-value: 2.52e-08
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Blast search parameters | ||||
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