F-box domain-containing protein [Caenorhabditis elegans]
Protein Classification
F-box protein( domain architecture ID 10459153)
F-box protein is the substrate-recognition component of a SCF(Skp1-cullin-F-box) E3 ubiquitin ligase complex that mediates the ubiquitination and subsequent proteasomal degradation of target proteins
List of domain hits
| Name | Accession | Description | Interval | E-value | ||
| FBA_2 | pfam07735 | F-box associated; Most of these proteins contain pfam00646 at the N terminus, suggesting that ... |
196-255 | 1.35e-10 | ||
F-box associated; Most of these proteins contain pfam00646 at the N terminus, suggesting that they are effectors linked with ubiquitination. : Pssm-ID: 429626 Cd Length: 67 Bit Score: 56.42 E-value: 1.35e-10
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| F-box | pfam00646 | F-box domain; This domain is approximately 50 amino acids long, and is usually found in the ... |
7-49 | 9.36e-05 | ||
F-box domain; This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. : Pssm-ID: 425796 Cd Length: 43 Bit Score: 39.45 E-value: 9.36e-05
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| class_II_aaRS-like_core super family | cl00268 | Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA ... |
144-202 | 2.46e-03 | ||
Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ. The actual alignment was detected with superfamily member PRK12293: Pssm-ID: 444800 Cd Length: 281 Bit Score: 39.21 E-value: 2.46e-03
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| Name | Accession | Description | Interval | E-value | ||
| FBA_2 | pfam07735 | F-box associated; Most of these proteins contain pfam00646 at the N terminus, suggesting that ... |
196-255 | 1.35e-10 | ||
F-box associated; Most of these proteins contain pfam00646 at the N terminus, suggesting that they are effectors linked with ubiquitination. Pssm-ID: 429626 Cd Length: 67 Bit Score: 56.42 E-value: 1.35e-10
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| F-box | pfam00646 | F-box domain; This domain is approximately 50 amino acids long, and is usually found in the ... |
7-49 | 9.36e-05 | ||
F-box domain; This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Pssm-ID: 425796 Cd Length: 43 Bit Score: 39.45 E-value: 9.36e-05
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| hisZ | PRK12293 | ATP phosphoribosyltransferase regulatory subunit; Provisional |
144-202 | 2.46e-03 | ||
ATP phosphoribosyltransferase regulatory subunit; Provisional Pssm-ID: 183411 Cd Length: 281 Bit Score: 39.21 E-value: 2.46e-03
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| Name | Accession | Description | Interval | E-value | ||
| FBA_2 | pfam07735 | F-box associated; Most of these proteins contain pfam00646 at the N terminus, suggesting that ... |
196-255 | 1.35e-10 | ||
F-box associated; Most of these proteins contain pfam00646 at the N terminus, suggesting that they are effectors linked with ubiquitination. Pssm-ID: 429626 Cd Length: 67 Bit Score: 56.42 E-value: 1.35e-10
|
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| F-box | pfam00646 | F-box domain; This domain is approximately 50 amino acids long, and is usually found in the ... |
7-49 | 9.36e-05 | ||
F-box domain; This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Pssm-ID: 425796 Cd Length: 43 Bit Score: 39.45 E-value: 9.36e-05
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| hisZ | PRK12293 | ATP phosphoribosyltransferase regulatory subunit; Provisional |
144-202 | 2.46e-03 | ||
ATP phosphoribosyltransferase regulatory subunit; Provisional Pssm-ID: 183411 Cd Length: 281 Bit Score: 39.21 E-value: 2.46e-03
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| Blast search parameters | ||||
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