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Conserved domains on  [gi|1831517999|ref|NP_001366647|]
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PH domain-containing protein [Caenorhabditis elegans]

Protein Classification

pleckstrin homology domain-containing family G protein( domain architecture ID 10457355)

pleckstrin homology (PH) domain-containing family G protein contains PH and RhoGEF domains and may function as a guanine nucleotide exchange factor; similar to Homo sapiens pleckstrin homology domain-containing family G members 1/2/3 (PLEKHG1/2/3) that are involved in the regulation of Rho protein signal transduction

Gene Ontology:  GO:0005085|GO:0051056
PubMed:  11738596

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PH_PLEKHG1_G2_G3 cd13243
Pleckstrin homology domain-containing family G members 1, 2, and 3 pleckstrin homology (PH) ...
386-537 7.06e-59

Pleckstrin homology domain-containing family G members 1, 2, and 3 pleckstrin homology (PH) domain; PLEKHG1 (also called ARHGEF41), PLEKHG2 (also called ARHGEF42 or CLG/common-site lymphoma/leukemia guanine nucleotide exchange factor2), and PLEKHG3 (also called ARHGEF43) have RhoGEF DH/double-homology domains in tandem with a PH domain which is involved in phospholipid binding. They function as a guanine nucleotide exchange factor (GEF) and are involved in the regulation of Rho protein signal transduction. Mutations in PLEKHG1 have been associated panic disorder (PD), an anxiety disorder characterized by panic attacks and anticipatory anxiety. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


:

Pssm-ID: 270063 [Multi-domain]  Cd Length: 147  Bit Score: 197.96  E-value: 7.06e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831517999 386 LIQVKRAHEVMTSQAARINDEKKKAEHIERVGQLQSTLQKWKADEiqisnLSAYGDLLLEATFRQAGSKTTRLLFLFEEM 465
Cdd:cd13243     1 RSVVEEALDTMTQVAWHINDMKRKHEHAVRVQEIQSLLDGWEGPE-----LTTYGDLVLEGTFRMAGAKNERLLFLFDKM 75
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1831517999 466 LLIVKQR-GANYVCKDYIMCSNLMLNEWIcPEEPLSFQVLSFDNPRAQYVFMASSMEQKRTWMQELKRMMLDH 537
Cdd:cd13243    76 LLITKKReDGILQYKTHIMCSNLMLSESI-PKEPLSFQVLPFDNPKLQYTLQAKNQEQKRLWTQEIKRLILEN 147
RhoGEF pfam00621
RhoGEF domain; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called ...
227-404 1.32e-41

RhoGEF domain; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that pfam00169 domains invariably occur C-terminal to RhoGEF/DH domains.


:

Pssm-ID: 459876 [Multi-domain]  Cd Length: 176  Bit Score: 150.14  E-value: 1.32e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831517999 227 IAIELLDTERTYVEDLNAVIKGYMDFLvedREKLKVTLDAISSLFGCIERIFAFNKQ-LYNQLDAADLDCVKMSRCFVES 305
Cdd:pfam00621   1 VIKELLQTERSYVRDLEILVEVFLPPN---SKPLSESEEEIKTIFSNIEEIYELHRQlLLEELLKEWISIQRIGDIFLKF 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831517999 306 SGKFEDYIEYCTNYHRMMSTLYHLQQQ-PLVARALQERQL-ALNHSLQLSAYLLKPVQRILKYHLFLENILKNMPStTHP 383
Cdd:pfam00621  78 APGFKVYSTYCSNYPKALKLLKKLLKKnPKFRAFLEELEAnPECRGLDLNSFLIKPVQRIPRYPLLLKELLKHTPP-DHP 156
                         170       180
                  ....*....|....*....|.
gi 1831517999 384 EElIQVKRAHEVMTSQAARIN 404
Cdd:pfam00621 157 DY-EDLKKALEAIKEVAKQIN 176
 
Name Accession Description Interval E-value
PH_PLEKHG1_G2_G3 cd13243
Pleckstrin homology domain-containing family G members 1, 2, and 3 pleckstrin homology (PH) ...
386-537 7.06e-59

Pleckstrin homology domain-containing family G members 1, 2, and 3 pleckstrin homology (PH) domain; PLEKHG1 (also called ARHGEF41), PLEKHG2 (also called ARHGEF42 or CLG/common-site lymphoma/leukemia guanine nucleotide exchange factor2), and PLEKHG3 (also called ARHGEF43) have RhoGEF DH/double-homology domains in tandem with a PH domain which is involved in phospholipid binding. They function as a guanine nucleotide exchange factor (GEF) and are involved in the regulation of Rho protein signal transduction. Mutations in PLEKHG1 have been associated panic disorder (PD), an anxiety disorder characterized by panic attacks and anticipatory anxiety. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


Pssm-ID: 270063 [Multi-domain]  Cd Length: 147  Bit Score: 197.96  E-value: 7.06e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831517999 386 LIQVKRAHEVMTSQAARINDEKKKAEHIERVGQLQSTLQKWKADEiqisnLSAYGDLLLEATFRQAGSKTTRLLFLFEEM 465
Cdd:cd13243     1 RSVVEEALDTMTQVAWHINDMKRKHEHAVRVQEIQSLLDGWEGPE-----LTTYGDLVLEGTFRMAGAKNERLLFLFDKM 75
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1831517999 466 LLIVKQR-GANYVCKDYIMCSNLMLNEWIcPEEPLSFQVLSFDNPRAQYVFMASSMEQKRTWMQELKRMMLDH 537
Cdd:cd13243    76 LLITKKReDGILQYKTHIMCSNLMLSESI-PKEPLSFQVLPFDNPKLQYTLQAKNQEQKRLWTQEIKRLILEN 147
RhoGEF pfam00621
RhoGEF domain; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called ...
227-404 1.32e-41

RhoGEF domain; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that pfam00169 domains invariably occur C-terminal to RhoGEF/DH domains.


Pssm-ID: 459876 [Multi-domain]  Cd Length: 176  Bit Score: 150.14  E-value: 1.32e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831517999 227 IAIELLDTERTYVEDLNAVIKGYMDFLvedREKLKVTLDAISSLFGCIERIFAFNKQ-LYNQLDAADLDCVKMSRCFVES 305
Cdd:pfam00621   1 VIKELLQTERSYVRDLEILVEVFLPPN---SKPLSESEEEIKTIFSNIEEIYELHRQlLLEELLKEWISIQRIGDIFLKF 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831517999 306 SGKFEDYIEYCTNYHRMMSTLYHLQQQ-PLVARALQERQL-ALNHSLQLSAYLLKPVQRILKYHLFLENILKNMPStTHP 383
Cdd:pfam00621  78 APGFKVYSTYCSNYPKALKLLKKLLKKnPKFRAFLEELEAnPECRGLDLNSFLIKPVQRIPRYPLLLKELLKHTPP-DHP 156
                         170       180
                  ....*....|....*....|.
gi 1831517999 384 EElIQVKRAHEVMTSQAARIN 404
Cdd:pfam00621 157 DY-EDLKKALEAIKEVAKQIN 176
RhoGEF smart00325
Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Guanine nucleotide exchange ...
227-405 1.71e-41

Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains. Improved coverage.


Pssm-ID: 214619 [Multi-domain]  Cd Length: 180  Bit Score: 150.14  E-value: 1.71e-41
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831517999  227 IAIELLDTERTYVEDLNAVIKGYMDFLVEDREKLkvTLDAISSLFGCIERIFAFNKQLYNQL----DAADLDCVKMSRCF 302
Cdd:smart00325   1 VLKELLQTERNYVRDLKLLVEVFLKPLKKELKLL--SPNELETLFGNIEEIYEFHRDFLDELeeriEEWDDSVERIGDVF 78
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831517999  303 VESSGKFEDYIEYCTNYHRMMSTLYHLQQQPLVARALQERQLALNH-SLQLSAYLLKPVQRILKYHLFLENILKNMPStt 381
Cdd:smart00325  79 LKLEEFFKIYSEYCSNHPDALELLKKLKKNPRFQKFLKEIESSPQCrRLTLESLLLKPVQRLTKYPLLLKELLKHTPE-- 156
                          170       180
                   ....*....|....*....|....
gi 1831517999  382 HPEELIQVKRAHEVMTSQAARIND 405
Cdd:smart00325 157 DHEDREDLKKALKAIKELANQVNE 180
RhoGEF cd00160
Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous ...
224-404 1.33e-40

Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.


Pssm-ID: 238091 [Multi-domain]  Cd Length: 181  Bit Score: 147.44  E-value: 1.33e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831517999 224 LDRIAIELLDTERTYVEDLNAVIKGYMDFLVEDREKLkvTLDAISSLFGCIERIFAFNKQLYNQLDAA----DLDCVKMS 299
Cdd:cd00160     1 RQEVIKELLQTERNYVRDLKLLVEVFLKPLDKELLPL--SPEEVELLFGNIEEIYEFHRIFLKSLEERveewDKSGPRIG 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831517999 300 RCFVESSGKFEDYIEYCTNYHRMMSTLYHLQQqplVARALQE---RQLALNHSLQLSAYLLKPVQRILKYHLFLENILKN 376
Cdd:cd00160    79 DVFLKLAPFFKIYSEYCSNHPDALELLKKLKK---FNKFFQEfleKAESECGRLKLESLLLKPVQRLTKYPLLLKELLKH 155
                         170       180
                  ....*....|....*....|....*...
gi 1831517999 377 MPSTthPEELIQVKRAHEVMTSQAARIN 404
Cdd:cd00160   156 TPDG--HEDREDLKKALEAIKEVASQVN 181
PH smart00233
Pleckstrin homology domain; Domain commonly found in eukaryotic signalling proteins. The ...
470-534 2.98e-03

Pleckstrin homology domain; Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.


Pssm-ID: 214574 [Multi-domain]  Cd Length: 102  Bit Score: 37.91  E-value: 2.98e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1831517999  470 KQRGANYVCKDYIMCSNLMLNEWICP---EEPLSFQVLSFDnpRAQYVFMASSMEQKRTWMQELKRMM 534
Cdd:smart00233  36 KKDKKSYKPKGSIDLSGCTVREAPDPdssKKPHCFEIKTSD--RKTLLLQAESEEEREKWVEALRKAI 101
 
Name Accession Description Interval E-value
PH_PLEKHG1_G2_G3 cd13243
Pleckstrin homology domain-containing family G members 1, 2, and 3 pleckstrin homology (PH) ...
386-537 7.06e-59

Pleckstrin homology domain-containing family G members 1, 2, and 3 pleckstrin homology (PH) domain; PLEKHG1 (also called ARHGEF41), PLEKHG2 (also called ARHGEF42 or CLG/common-site lymphoma/leukemia guanine nucleotide exchange factor2), and PLEKHG3 (also called ARHGEF43) have RhoGEF DH/double-homology domains in tandem with a PH domain which is involved in phospholipid binding. They function as a guanine nucleotide exchange factor (GEF) and are involved in the regulation of Rho protein signal transduction. Mutations in PLEKHG1 have been associated panic disorder (PD), an anxiety disorder characterized by panic attacks and anticipatory anxiety. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


Pssm-ID: 270063 [Multi-domain]  Cd Length: 147  Bit Score: 197.96  E-value: 7.06e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831517999 386 LIQVKRAHEVMTSQAARINDEKKKAEHIERVGQLQSTLQKWKADEiqisnLSAYGDLLLEATFRQAGSKTTRLLFLFEEM 465
Cdd:cd13243     1 RSVVEEALDTMTQVAWHINDMKRKHEHAVRVQEIQSLLDGWEGPE-----LTTYGDLVLEGTFRMAGAKNERLLFLFDKM 75
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1831517999 466 LLIVKQR-GANYVCKDYIMCSNLMLNEWIcPEEPLSFQVLSFDNPRAQYVFMASSMEQKRTWMQELKRMMLDH 537
Cdd:cd13243    76 LLITKKReDGILQYKTHIMCSNLMLSESI-PKEPLSFQVLPFDNPKLQYTLQAKNQEQKRLWTQEIKRLILEN 147
RhoGEF pfam00621
RhoGEF domain; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called ...
227-404 1.32e-41

RhoGEF domain; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that pfam00169 domains invariably occur C-terminal to RhoGEF/DH domains.


Pssm-ID: 459876 [Multi-domain]  Cd Length: 176  Bit Score: 150.14  E-value: 1.32e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831517999 227 IAIELLDTERTYVEDLNAVIKGYMDFLvedREKLKVTLDAISSLFGCIERIFAFNKQ-LYNQLDAADLDCVKMSRCFVES 305
Cdd:pfam00621   1 VIKELLQTERSYVRDLEILVEVFLPPN---SKPLSESEEEIKTIFSNIEEIYELHRQlLLEELLKEWISIQRIGDIFLKF 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831517999 306 SGKFEDYIEYCTNYHRMMSTLYHLQQQ-PLVARALQERQL-ALNHSLQLSAYLLKPVQRILKYHLFLENILKNMPStTHP 383
Cdd:pfam00621  78 APGFKVYSTYCSNYPKALKLLKKLLKKnPKFRAFLEELEAnPECRGLDLNSFLIKPVQRIPRYPLLLKELLKHTPP-DHP 156
                         170       180
                  ....*....|....*....|.
gi 1831517999 384 EElIQVKRAHEVMTSQAARIN 404
Cdd:pfam00621 157 DY-EDLKKALEAIKEVAKQIN 176
RhoGEF smart00325
Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Guanine nucleotide exchange ...
227-405 1.71e-41

Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains. Improved coverage.


Pssm-ID: 214619 [Multi-domain]  Cd Length: 180  Bit Score: 150.14  E-value: 1.71e-41
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831517999  227 IAIELLDTERTYVEDLNAVIKGYMDFLVEDREKLkvTLDAISSLFGCIERIFAFNKQLYNQL----DAADLDCVKMSRCF 302
Cdd:smart00325   1 VLKELLQTERNYVRDLKLLVEVFLKPLKKELKLL--SPNELETLFGNIEEIYEFHRDFLDELeeriEEWDDSVERIGDVF 78
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831517999  303 VESSGKFEDYIEYCTNYHRMMSTLYHLQQQPLVARALQERQLALNH-SLQLSAYLLKPVQRILKYHLFLENILKNMPStt 381
Cdd:smart00325  79 LKLEEFFKIYSEYCSNHPDALELLKKLKKNPRFQKFLKEIESSPQCrRLTLESLLLKPVQRLTKYPLLLKELLKHTPE-- 156
                          170       180
                   ....*....|....*....|....
gi 1831517999  382 HPEELIQVKRAHEVMTSQAARIND 405
Cdd:smart00325 157 DHEDREDLKKALKAIKELANQVNE 180
RhoGEF cd00160
Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous ...
224-404 1.33e-40

Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.


Pssm-ID: 238091 [Multi-domain]  Cd Length: 181  Bit Score: 147.44  E-value: 1.33e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831517999 224 LDRIAIELLDTERTYVEDLNAVIKGYMDFLVEDREKLkvTLDAISSLFGCIERIFAFNKQLYNQLDAA----DLDCVKMS 299
Cdd:cd00160     1 RQEVIKELLQTERNYVRDLKLLVEVFLKPLDKELLPL--SPEEVELLFGNIEEIYEFHRIFLKSLEERveewDKSGPRIG 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831517999 300 RCFVESSGKFEDYIEYCTNYHRMMSTLYHLQQqplVARALQE---RQLALNHSLQLSAYLLKPVQRILKYHLFLENILKN 376
Cdd:cd00160    79 DVFLKLAPFFKIYSEYCSNHPDALELLKKLKK---FNKFFQEfleKAESECGRLKLESLLLKPVQRLTKYPLLLKELLKH 155
                         170       180
                  ....*....|....*....|....*...
gi 1831517999 377 MPSTthPEELIQVKRAHEVMTSQAARIN 404
Cdd:cd00160   156 TPDG--HEDREDLKKALEAIKEVASQVN 181
PH2_Kalirin_Trio_p63RhoGEF cd13241
p63RhoGEF pleckstrin homology (PH) domain, repeat 2; The guanine nucleotide exchange factor ...
475-534 2.06e-03

p63RhoGEF pleckstrin homology (PH) domain, repeat 2; The guanine nucleotide exchange factor p63RhoGEF is an effector of the heterotrimeric G protein, Galphaq and linking Galphaq-coupled receptors (GPCRs) to the activation of RhoA. The Dbl(DH) and PH domains of p63RhoGEF interact with the effector-binding site and the C-terminal region of Galphaq and appear to relieve autoinhibition of the catalytic DH domain by the PH domain. Trio, Duet, and p63RhoGEF are shown to constitute a family of Galphaq effectors that appear to activate RhoA both in vitro and in intact cells. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. Trio plays an essential role in regulating the actin cytoskeleton during axonal guidance and branching. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


Pssm-ID: 270061  Cd Length: 140  Bit Score: 39.55  E-value: 2.06e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1831517999 475 NYVCKDYIMCSNLMLNEwICPEEPLSFQVLSFD--NPRAQYVFMASSMEQKRTWMQELKRMM 534
Cdd:cd13241    64 GYIYKNHIKVNKMSLEE-NVDGDPLRFALKSRDpnNPSETFILQAASPEVRQEWVDTINQIL 124
PH smart00233
Pleckstrin homology domain; Domain commonly found in eukaryotic signalling proteins. The ...
470-534 2.98e-03

Pleckstrin homology domain; Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.


Pssm-ID: 214574 [Multi-domain]  Cd Length: 102  Bit Score: 37.91  E-value: 2.98e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1831517999  470 KQRGANYVCKDYIMCSNLMLNEWICP---EEPLSFQVLSFDnpRAQYVFMASSMEQKRTWMQELKRMM 534
Cdd:smart00233  36 KKDKKSYKPKGSIDLSGCTVREAPDPdssKKPHCFEIKTSD--RKTLLLQAESEEEREKWVEALRKAI 101
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
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