NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1972266940|ref|NP_001379647|]
View 

Cyclin-dependent kinases regulatory subunit [Caenorhabditis elegans]

Protein Classification

cyclin-dependent kinases regulatory subunit( domain architecture ID 10471449)

cyclin-dependent kinases regulatory subunit binds to the catalytic subunit of cyclin dependent kinases and is essential for their biological function

CATH:  3.30.170.10
Gene Ontology:  GO:0016538
PubMed:  25864384
SCOP:  4001729

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
CKS pfam01111
Cyclin-dependent kinase regulatory subunit;
8-75 1.11e-47

Cyclin-dependent kinase regulatory subunit;


:

Pssm-ID: 460068  Cd Length: 68  Bit Score: 145.76  E-value: 1.11e-47
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1972266940  8 FYYSNKYEDDEFEYRHVHVTKDVSKLIPKNRLMSETEWRSLGIQQSPGWMHYMIHGPERHVLLFRRPL 75
Cdd:pfam01111  1 IYYSDKYEDDEYEYRHVILPKELAKKIPKNRLLTEEEWRNLGIQQSPGWEHYMIHKPEPHILLFRRPK 68
 
Name Accession Description Interval E-value
CKS pfam01111
Cyclin-dependent kinase regulatory subunit;
8-75 1.11e-47

Cyclin-dependent kinase regulatory subunit;


Pssm-ID: 460068  Cd Length: 68  Bit Score: 145.76  E-value: 1.11e-47
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1972266940  8 FYYSNKYEDDEFEYRHVHVTKDVSKLIPKNRLMSETEWRSLGIQQSPGWMHYMIHGPERHVLLFRRPL 75
Cdd:pfam01111  1 IYYSDKYEDDEYEYRHVILPKELAKKIPKNRLLTEEEWRNLGIQQSPGWEHYMIHKPEPHILLFRRPK 68
CKS smart01084
Cyclin-dependent kinase regulatory subunit; Cyclin-dependent kinase regulatory subunit.
 7-75 2.40e-40

Cyclin-dependent kinase regulatory subunit; Cyclin-dependent kinase regulatory subunit.


Pssm-ID: 198152  Cd Length: 70  Bit Score: 127.45  E-value: 2.40e-40
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1972266940   7 DFYYSNKYEDDEFEYRHVHVTKDVSKLIPKNRLMSETEWRSLGIQQSPGWMHYMIHGPERHVLLFRRPL 75
Cdd:smart01084  1 PIYYSDKYEDDEYEYRHVILPKEIAKLVPKIRLLSENEWRKLGIQQSKGWEHYMIHKPEPHILLFRRPL 69
PLN00010 PLN00010
cyclin-dependent kinases regulatory subunit; Provisional
 9-80 1.14e-36

cyclin-dependent kinases regulatory subunit; Provisional


Pssm-ID: 215027  Cd Length: 86  Bit Score: 118.89  E-value: 1.14e-36
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1972266940  9 YYSNKYEDDEFEYRHVHVTKDVSKLIPKNRLMSETEWRSLGIQQSPGWMHYMIHGPERHVLLFRRPLAATQK 80
Cdd:PLN00010   5 QYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQ 76
 
Name Accession Description Interval E-value
CKS pfam01111
Cyclin-dependent kinase regulatory subunit;
8-75 1.11e-47

Cyclin-dependent kinase regulatory subunit;


Pssm-ID: 460068  Cd Length: 68  Bit Score: 145.76  E-value: 1.11e-47
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1972266940  8 FYYSNKYEDDEFEYRHVHVTKDVSKLIPKNRLMSETEWRSLGIQQSPGWMHYMIHGPERHVLLFRRPL 75
Cdd:pfam01111  1 IYYSDKYEDDEYEYRHVILPKELAKKIPKNRLLTEEEWRNLGIQQSPGWEHYMIHKPEPHILLFRRPK 68
CKS smart01084
Cyclin-dependent kinase regulatory subunit; Cyclin-dependent kinase regulatory subunit.
 7-75 2.40e-40

Cyclin-dependent kinase regulatory subunit; Cyclin-dependent kinase regulatory subunit.


Pssm-ID: 198152  Cd Length: 70  Bit Score: 127.45  E-value: 2.40e-40
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1972266940   7 DFYYSNKYEDDEFEYRHVHVTKDVSKLIPKNRLMSETEWRSLGIQQSPGWMHYMIHGPERHVLLFRRPL 75
Cdd:smart01084  1 PIYYSDKYEDDEYEYRHVILPKEIAKLVPKIRLLSENEWRKLGIQQSKGWEHYMIHKPEPHILLFRRPL 69
PLN00010 PLN00010
cyclin-dependent kinases regulatory subunit; Provisional
 9-80 1.14e-36

cyclin-dependent kinases regulatory subunit; Provisional


Pssm-ID: 215027  Cd Length: 86  Bit Score: 118.89  E-value: 1.14e-36
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1972266940  9 YYSNKYEDDEFEYRHVHVTKDVSKLIPKNRLMSETEWRSLGIQQSPGWMHYMIHGPERHVLLFRRPLAATQK 80
Cdd:PLN00010   5 QYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQ 76
PTZ00453 PTZ00453
cyclin-dependent kinase; Provisional
 10-74 2.19e-35

cyclin-dependent kinase; Provisional


Pssm-ID: 185632  Cd Length: 96  Bit Score: 115.83  E-value: 2.19e-35
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1972266940 10 YSNKYEDDEFEYRHVHVTKDVSKLIPKNRLMSETEWRSLGIQQSPGWMHYMIHGPERHVLLFRRP 74
Cdd:PTZ00453  30 YSDKYYDDEYEYRHVILPKDFARLVPRSRLMSESEWRQLGVQQSVGWRHYMIHKPEPHVLLFKRP 94
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH