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Conserved domains on  [gi|2287780773|ref|NP_001397864|]
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small ribosomal subunit protein bS16m isoform 2 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
S16 TIGR00002
ribosomal protein S16; This model describes ribosomal S16 of bacteria and organelles. [Protein ...
 17-92 2.62e-39

ribosomal protein S16; This model describes ribosomal S16 of bacteria and organelles. [Protein synthesis, Ribosomal proteins: synthesis and modification]


:

Pssm-ID: 272848  Cd Length: 78  Bit Score: 125.43  E-value: 2.62e-39
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2287780773 17 LTIRLALGGCTNRPFYRIVAAHNKCPRDGRFVEQLGSYDPLPNshgEKLVALNLDRIRHWIGCGAHLSKPMEKLLG 92
Cdd:TIGR00002  1 VKIRLKRGGRKKRPFYRIVVADSRSRRDGRYIEELGFYNPITK---EDLVKLNVERIKHWLSKGAQPTDTVRKLLK 73
 
Name Accession Description Interval E-value
S16 TIGR00002
ribosomal protein S16; This model describes ribosomal S16 of bacteria and organelles. [Protein ...
 17-92 2.62e-39

ribosomal protein S16; This model describes ribosomal S16 of bacteria and organelles. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272848  Cd Length: 78  Bit Score: 125.43  E-value: 2.62e-39
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2287780773 17 LTIRLALGGCTNRPFYRIVAAHNKCPRDGRFVEQLGSYDPLPNshgEKLVALNLDRIRHWIGCGAHLSKPMEKLLG 92
Cdd:TIGR00002  1 VKIRLKRGGRKKRPFYRIVVADSRSRRDGRYIEELGFYNPITK---EDLVKLNVERIKHWLSKGAQPTDTVRKLLK 73
Ribosomal_S16 pfam00886
Ribosomal protein S16;
24-84 5.84e-32

Ribosomal protein S16;


Pssm-ID: 459981  Cd Length: 61  Bit Score: 106.30  E-value: 5.84e-32
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2287780773 24 GGCTNRPFYRIVAAHNKCPRDGRFVEQLGSYDPLPNShGEKLVALNLDRIRHWIGCGAHLS 84
Cdd:pfam00886  2 MGRKKRPFYRIVVADSRSPRDGRFIEELGTYNPLAEP-GEPRVKLDEERIKYWLGVGAQPT 61
RpsP COG0228
Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 ...
 17-91 3.52e-30

Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439998  Cd Length: 76  Bit Score: 102.05  E-value: 3.52e-30
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2287780773 17 LTIRLALGGCTNRPFYRIVAAHNKCPRDGRFVEQLGSYDPLPNshgEKLVALNLDRIRHWIGCGAHLSKPMEKLL 91
Cdd:COG0228    2 VKIRLARGGAKKRPFYRIVVADSRSPRDGRFIERIGFYNPLTN---PARIKLDEERAQYWLSKGAQPTDTVAKLL 73
rpsP PRK14521
30S ribosomal protein S16; Provisional
 19-81 1.10e-16

30S ribosomal protein S16; Provisional


Pssm-ID: 237744 [Multi-domain]  Cd Length: 186  Bit Score: 70.96  E-value: 1.10e-16
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2287780773  19 IRLALGGCTNRPFYRIVAAHNKCPRDGRFVEQLGSYDPLPNShgeKLVALNLDRIRHWIGCGA 81
Cdd:PRK14521    5 IRLQRHGRKGKAFYWIVAADSRAPRDGKFIEKIGTYNPNTNP---ATVDLNFDRAVYWLMNGA 64
 
Name Accession Description Interval E-value
S16 TIGR00002
ribosomal protein S16; This model describes ribosomal S16 of bacteria and organelles. [Protein ...
 17-92 2.62e-39

ribosomal protein S16; This model describes ribosomal S16 of bacteria and organelles. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272848  Cd Length: 78  Bit Score: 125.43  E-value: 2.62e-39
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2287780773 17 LTIRLALGGCTNRPFYRIVAAHNKCPRDGRFVEQLGSYDPLPNshgEKLVALNLDRIRHWIGCGAHLSKPMEKLLG 92
Cdd:TIGR00002  1 VKIRLKRGGRKKRPFYRIVVADSRSRRDGRYIEELGFYNPITK---EDLVKLNVERIKHWLSKGAQPTDTVRKLLK 73
Ribosomal_S16 pfam00886
Ribosomal protein S16;
24-84 5.84e-32

Ribosomal protein S16;


Pssm-ID: 459981  Cd Length: 61  Bit Score: 106.30  E-value: 5.84e-32
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2287780773 24 GGCTNRPFYRIVAAHNKCPRDGRFVEQLGSYDPLPNShGEKLVALNLDRIRHWIGCGAHLS 84
Cdd:pfam00886  2 MGRKKRPFYRIVVADSRSPRDGRFIEELGTYNPLAEP-GEPRVKLDEERIKYWLGVGAQPT 61
RpsP COG0228
Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 ...
 17-91 3.52e-30

Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439998  Cd Length: 76  Bit Score: 102.05  E-value: 3.52e-30
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2287780773 17 LTIRLALGGCTNRPFYRIVAAHNKCPRDGRFVEQLGSYDPLPNshgEKLVALNLDRIRHWIGCGAHLSKPMEKLL 91
Cdd:COG0228    2 VKIRLARGGAKKRPFYRIVVADSRSPRDGRFIERIGFYNPLTN---PARIKLDEERAQYWLSKGAQPTDTVAKLL 73
rpsP PRK14521
30S ribosomal protein S16; Provisional
 19-81 1.10e-16

30S ribosomal protein S16; Provisional


Pssm-ID: 237744 [Multi-domain]  Cd Length: 186  Bit Score: 70.96  E-value: 1.10e-16
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2287780773  19 IRLALGGCTNRPFYRIVAAHNKCPRDGRFVEQLGSYDPLPNShgeKLVALNLDRIRHWIGCGA 81
Cdd:PRK14521    5 IRLQRHGRKGKAFYWIVAADSRAPRDGKFIEKIGTYNPNTNP---ATVDLNFDRAVYWLMNGA 64
rpsP PRK14522
30S ribosomal protein S16; Provisional
 17-91 5.85e-13

30S ribosomal protein S16; Provisional


Pssm-ID: 172988 [Multi-domain]  Cd Length: 116  Bit Score: 59.62  E-value: 5.85e-13
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2287780773  17 LTIRLALGGCTNRPFYRIVAAHNKCPRDGRFVEQLGSYDPlpnsHGEKLVALNLDRIRHWIGCGAHLSKPMEKLL 91
Cdd:PRK14522    3 LKIRLRQQGRRNHVVYRLVLADVESPRDGKYIELLGWYDP----HSEQNYQLKSERIFYWLNQGAELTEKAGALV 73
rpsP PRK14520
30S ribosomal protein S16; Provisional
 19-91 1.84e-12

30S ribosomal protein S16; Provisional


Pssm-ID: 184724 [Multi-domain]  Cd Length: 155  Bit Score: 59.32  E-value: 1.84e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2287780773  19 IRLALGGCTNRPFYRIVAAHNKCPRDGRFVEQLGSYDPLPNShgeKLVALNLDRIRHWIGCGAHLSKPMEKLL 91
Cdd:PRK14520    5 IKLKRLGKIRNPQYRIVVADSRTKRDGRAIEEIGRYHPKEEP---SLIEIDSERAQYWLSVGAQPTEPVLALL 74
rps16 CHL00005
ribosomal protein S16
 17-82 3.22e-10

ribosomal protein S16


Pssm-ID: 176950  Cd Length: 82  Bit Score: 51.56  E-value: 3.22e-10
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2287780773 17 LTIRLALGGCTNRPFYRIVAAHNKCPRDGRFVEQLGSYDPLPNShgeklVALNLDRIRHWIGCGAH 82
Cdd:CHL00005   2 VKLRLKRCGRKQQAVYRIVAIDVRSRREGRDLEKVGFYDPIKNQ-----TYLNVPAILYFLEKGAQ 62
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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